BIN1 Membrane Curvature Sensing and Generation Show Autoinhibition Regulated by Downstream Ligands and PI(4,5)P2
Open accessAbstract
In striated muscles, invaginations from the plasma membrane, termed transverse tubules (T-tubule), function in the excitation-contraction coupling machinery. BIN1 (isoform8) plays a critical role in the biogenesis of T-tubules. BIN1 contains an N-terminal BAR domain to sense and induce membrane curvature, an isoform8-specific polybasic motif (exon10) as the phosphoinositide binding module and a C-terminal Src homology 3 (SH3) domain for the recruitment of downstream proteins such as dynamin 2. Previous studies of N-BAR domains focused on elucidating mechanisms of membrane curvature sensing and generation (MC-S&G). Less is known about how MC-S&G is regulated. We found that the SH3 domain binds to the exon10 motif more strongly compared to the proline-rich domain (PRD) of dynamin 2. Furthermore, we found that the MC-S&G ability of full-length BIN1 is inhibited on membranes lacking PI(4,5)P2. Addition of PI(4,5)P2 in the membrane activates BIN1 to sense and induce membrane curvature. Co-presence of the SH3 domain and exon10 motif leads to the strongest phosphoinositide-mediated control of BIN1 function. Addition of SH3 domain ligand (such as PRD peptides), as well as addition of the water-soluble PI(4,5)P2 analogue, can both enhance the MC-S&G ability of BIN1 on membranes without PI(4,5)P2, indicating that the key to activate BIN1 is to disrupt the exon10-SH3 interaction. The nonsense mutation K436X, found in centronuclear myopathy (CNM) patients, abolishes SH3 domain binding with either exon10 or the PRD motif, resulting in increased membrane deformation capacity. Our results suggest an autoinhibition model for BIN1 that involves a synergistic regulation by membrane composition and protein-protein interactions.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The SH3 domain regulates the conformation of the BAR domain and its interaction with other molecules.
“In addition, the SH3 domain regulates the conformation of the BAR domain and its interaction with other molecules (34,35).”
From BIN1 regulates BACE1 intracellular trafficking and amyloid-β production (2016) · cites this paper as [34]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Butler, M. H., David, C., Ochoa, G.-C., Freyberg, Z., Daniell, L., Grabs, D., Cremona, O., & Camilli, P. D. (1997) · The Journal of Cell Biology · doi:10.1083/jcb.137.6.1355 · Cited by 256 · see citing works
Meinecke, M., Boucrot, E., Camdere, G., Hon, W.-C., Mittal, R., & McMahon, H. T. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.444869 · Cited by 155 · see citing works
Flagged first, then by citations
Research works printed but not linked: 63
- Qualmann B.; Koch D.; Kessels M. M. (2011) Let’s go bananas: revisiting the endocytic BAR code. EMBO J. 30, 3501– 3515. 21878992 PMC3181480
- Mim C.; Unger V. M. (2012) Membrane curvature and its generation by BAR proteins. Trends Biochem. Sci. 37, 526– 533. 23058040 PMC3508348
- Al-Qusairi L.; Laporte J. (2011) T-tubule biogenesis and triad formation in skeletal muscle and implication in human diseases. Skeletal Muscle 1, 26– 26. 21797990 PMC3156648
- Prokic I.; Cowling B. S.; Laporte J. (2014) Amphiphysin 2 (BIN1) in physiology and diseases. J. Mol. Med. (Berlin) 92, 453– 463. 24590001
- Nance J. R.; Dowling J. J.; Gibbs E. M.; Boennemann C. G. (2012) Congenital Myopathies: An Update. Curr. Neurol. Neurosci. Rep. 12, 165– 174. 22392505 PMC4491488
- Casal E.; Federici L.; Zhang W.; Fernandez-Recio J.; Priego E.-M.; Miguel R. N.; DuHadaway J. B.; Prendergast G. C.; Luisi B. F.; Laue E. D. (2006) The crystal structure of the BAR domain from human Bin1/Amphiphysin II and its implications for molecular recognition. Biochemistry 45, 12917– 12928. 17059209 PMC2572078
- Ellis J. D.; Barrios-Rodiles M.; Colak R.; Irimia M.; Kim T.; Calarco J. A.; Wang X.; Pan Q.; O’Hanlon D.; Kim P. M.; Wrana J. L.; Blencowe B. J. (2012) Tissue-specific alternative splicing remodels protein-protein interaction networks. Mol. Cell 46, 884– 892. 22749401
- Fugier C.; Klein A. F.; Hammer C.; Vassilopoulos S.; Ivarsson Y.; Toussaint A.; Tosch V.; Vignaud A.; Ferry A.; Messaddeq N.; Kokunai Y.; Tsuburaya R.; de la Grange P.; Dembele D.; Francois V.; Precigout G.; Boulade-Ladame C.; Hummel M.-C.; Lopez de Munain A.; Sergeant N.; Laquerriere A.; Thibault C.; Deryckere F.; Auboeuf D.; Garcia L.; Zimmermann P.; Udd B.; Schoser B.; Takahashi M. P.; Nishino I.; Bassez G.; Laporte J.; Furling D.; Charlet-Berguerand N. (2011) Misregulated alternative splicing of BIN1 is associated with T tubule alterations and muscle weakness in myotonic dystrophy. Nat. Med. 17, 720– 725. 21623381
- Lee E. Y.; Marcucci M.; Daniell L.; Pypaert M.; Weisz O. A.; Ochoa G. C.; Farsad K.; Wenk M. R.; De Camilli P. (2002) Amphiphysin 2 (Bin1) and T-tubule biogenesis in muscle. Science 297, 1193– 1196. 12183633
- Kojima C.; Hashimoto A.; Yabuta I.; Hirose M.; Hashimoto S.; Kanaho Y.; Sumimoto H.; Ikegami T.; Sabe H. (2004) Regulation of Bin1 SH3 domain binding by phosphoinositides. EMBO J. 23, 4413– 4422. 15483625 PMC526460
- Romero N. B.; Bitoun M. (2011) Centronuclear Myopathies. Semin. Pediatr. Neurol. 18, 250– 256. 22172420
- Tjondrokoesoemo A.; Park K. H.; Ferrante C.; Komazaki S.; Lesniak S.; Brotto M.; Ko J.-K.; Zhou J.; Weisleder N.; Ma J. (2011) Disrupted Membrane Structure and Intracellular Ca(2+) Signaling in Adult Skeletal Muscle with Acute Knockdown of Bin1. PLoS One 6, e25740. 21984944 PMC3184157
- Owen D. J.; Wigge P.; Vallis Y.; Moore J. D. A.; Evans P. R.; McMahon H. T. (1998) Crystal structure of the amphiphysin-2 SH3 domain and its role in the prevention of dynamin ring formation. EMBO J. 17, 5273– 5285. 9736607 PMC1170855
- Sundborger A.; Soderblom C.; Vorontsova O.; Evergren E.; Hinshaw J. E.; Shupliakov O. (2011) An endophilin-dynamin complex promotes budding of clathrin-coated vesicles during synaptic vesicle recycling. J. Cell Sci. 124, 133– 143. 21172823 PMC3001412
- Feng S. B.; Chen J. K.; Yu H. T.; Simon J. A.; Schreiber S. L. (1994) Two Binding Orientations for Peptides to the Src SH3 Domain - Development of a General-Model for SH3-Ligand Interactions. Science 266, 1241– 1247. 7526465
- Fu C. J.; Wu G.; Lv F. L.; Tian F. F. (2012) Structure-based characterization of the binding of peptide to the human endophilin-1 Src homology 3 domain using position-dependent noncovalent potential analysis. J. Mol. Model. 18, 2153– 2161. 21947444
- Anggono V.; Robinson P. J. (2007) Syndapin I and endophilin I bind overlapping proline-rich regions of dynamin I: role in synaptic vesicle endocytosis. J. Neurochem. 102, 931– 943. 17437541
- Rao Y.; Ma Q.; Vahedi-Faridi A.; Sundborger A.; Pechstein A.; Puchkov D.; Luo L.; Shupliakov O.; Saenger W.; Haucke V. (2010) Molecular basis for SH3 domain regulation of F-BAR-mediated membrane deformation. Proc. Natl. Acad. Sci. U.S.A. 107, 8213– 8218. 20404169 PMC2889545
- Chen Z.; Chang K.; Capraro B. R.; Zhu C.; Hsu C.-J.; Baumgart T. (2014) Intradimer/Intermolecular interactions suggest autoinhibition mechanism in endophilin A1. J. Am. Chem. Soc. 136, 4557– 4564. 24568626 PMC3985530
- Vazquez F. X.; Unger V. M.; Voth G. A. (2013) Autoinhibition of Endophilin in Solution via Interdomain Interactions. Biophys. J. 104, 396– 403. 23442861 PMC3552259
- Walde P.; Cosentino K.; Engel H.; Stano P. (2010) Giant Vesicles: Preparations and Applications. ChemBioChem 11, 848– 865. 20336703
- Kast D. J.; Yang C.; Disanza A.; Boczkowska M.; Madasu Y.; Scita G.; Svitkina T.; Dominguez R. (2014) Mechanism of IRSp53 inhibition and combinatorial activation by Cdc42 and downstream effectors. Nat. Struct. Mol. Biol. 21, 413– 422. 24584464 PMC4091835
- Hertzog M.; Milanesi F.; Hazelwood L.; Disanza A.; Liu H.; Perlade E.; Malabarba M. G.; Pasqualato S.; Maiolica A.; Confalonieri S.; Le Clainche C.; Offenhauser N.; Block J.; Rottner K.; Di Fiore P. P.; Carlier M.-F.; Volkmann N.; Hanein D.; Scita G. (2010) Molecular Basis for the Dual Function of Eps8 on Actin Dynamics: Bundling and Capping. PLoS Biol. 8, e1000387. 20532239 PMC2879411
- Grabs D.; Slepnev V. I.; Zhou S. Y.; David C.; Lynch M.; Cantley L. C.; DeCamilli P. (1997) The SH3 domain of amphiphysin binds the proline-rich domain of dynamin at a single site that defines a new SH3 binding consensus sequence. J. Biol. Chem. 272, 13419– 13425. 9148966
- Ladokhin A. S.; Fernandez-Vidal M.; White S. H. (2010) CD Spectroscopy of Peptides and Proteins Bound to Large Unilamellar Vesicles. J. Membr. Biol. 236, 247– 253. 20706833 PMC2938439
- Jung A. G.; Labarerra C.; Jansen A. M.; Qvortrup K.; Wild K.; Kjaerulff O. (2010) A Mutational Analysis of the Endophilin-A N-BAR Domain Performed in Living Flies. PLoS One 5, e9492. 20209138 PMC2831065
- Farsad K.; Ringstad N.; Takei K.; Floyd S. R.; Rose K.; De Camilli P. (2001) Generation of high curvature membranes mediated by direct endophilin bilayer interactions. J. Cell Biol. 155, 193– 200. 11604418 PMC2198845
- Boucrot E.; Pick A.; Camdere G.; Liska N.; Evergren E.; McMahon H. T.; Kozlov M. M. (2012) Membrane Fission Is Promoted by Insertion of Amphipathic Helices and Is Restricted by Crescent BAR Domains. Cell 149, 124– 136. 22464325 PMC3465558
- Bhatia V. K.; Hatzakis N. S.; Stamou D. (2010) A unifying mechanism accounts for sensing of membrane curvature by BAR domains, amphipathic helices and membrane-anchored proteins. Semin. Cell Dev. Biol. 21, 381– 390. 20006726
- Fernandes F.; Loura L. M. S.; Chichon F. J.; Carrascosa J. L.; Fedorov A.; Prieto M. (2008) Role of helix 0 of the N-BAR domain in membrane curvature generation. Biophys. J. 94, 3065– 3073. 18199667 PMC2275701
- Morton L. A.; Yang H.; Saludes J. P.; Fiorini Z.; Beninson L.; Chapman E. R.; Fleshner M.; Xue D.; Yin H. (2013) MARCKS-ED Peptide as a Curvature and Lipid Sensor. ACS Chem. Biol. 8, 218– 225. 23075500 PMC3548944
- Porumb T.; Crivici A.; Blackshear P. J.; Ikura M. (1997) Calcium binding and conformational properties of calmodulin complexed with peptides derived from myristoylated alanine-rich C kinase substrate (MARCKS) and MARCKS-related protein (MRP). Eur. Biophys. J. 25, 239– 247. 9112755
- Zhu C.; Das S. L.; Baumgart T. (2012) Nonlinear Sorting, Curvature Generation, and Crowding of Endophilin N-BAR on Tubular Membranes. Biophys. J. 102, 1837– 1845. 22768939 PMC3328703
- Sorre B.; Callan-Jones A.; Manzi J.; Goud B.; Prost J.; Bassereau P.; Roux A. (2012) Nature of curvature coupling of amphiphysin with membranes depends on its bound density. Proc. Natl. Acad. Sci. U.S.A. 109, 173– 178. 22184226 PMC3252917
- Wu T.; Shi Z.; Baumgart T. (2014) Mutations in BIN1 Associated with Centronuclear Myopathy Disrupt Membrane Remodeling by Affecting Protein Density and Oligomerization. PLoS One 9, e93060. 24755653 PMC3995651
- Ellenbroek W. G.; Wang Y.-H.; Christian D. A.; Discher D. E.; Janmey P. A.; Liu A. J. (2011) Divalent Cation-Dependent Formation of Electrostatic PIP2 Clusters in Lipid Monolayers. Biophys. J. 101, 2178– 2184. 22067156 PMC3207175
- McLaughlin S.; Wang J.; Gambhir A.; Murray D. (2002) PIP2 and Proteins: Interactions, Organization and Information Flow. Annu. Rev. Biophys. Biomol. Struct. 31, 151– 175. 11988466
- Toner M.; Vaio G.; McLaughlin A.; McLaughlin S. (1988) Adsorption of Cations to Phosphatidylinositol 4,5-Bisphosphate. Biochemistry 27, 7435– 7443. 2849993
- Wang J. Y.; Arbuzova A.; Hangyas-Mihalyne G.; McLaughlin S. (2001) The effector domain of myristoylated alanine-rich C kinase substrate binds strongly to phosphatidylinositol 4,5-bisphosphate. J. Biol. Chem. 276, 5012– 5019. 11053422
- Sorre B.; Callan-Jones A.; Manneville J.-B.; Nassoy P.; Joanny J.-F.; Prost J.; Goud B.; Bassereau P. (2009) Curvature-driven lipid sorting needs proximity to a demixing point and is aided by proteins. Proc. Natl. Acad. Sci. U.S.A. 106, 5622– 5626. 19304798 PMC2667082
- Capraro B. R.; Yoon Y.; Cho W.; Baumgart T. (2010) Curvature Sensing by the Epsin N-Terminal Homology Domain Measured on Cylindrical Lipid Membrane Tethers. J. Am. Chem. Soc. 132, 1200– 1201. 20050657 PMC4205049
- Baumgart T.; Capraro B. R.; Zhu C.; Das S. L. (2011) Thermodynamics and Mechanics of Membrane Curvature Generation and Sensing by Proteins and Lipids. Annu. Rev. Phys. Chem. 62, 483– 506. 21219150 PMC4205088
- Yoon Y.; Zhang X.; Cho W. (2012) Phosphatidylinositol 4,5-Bisphosphate (PtdIns(4,5)P-2) Specifically Induces Membrane Penetration and Deformation by Bin/Amphiphysin/Rvs (BAR) Domains. J. Biol. Chem. 287, 34078– 34090. 22888025 PMC3464517
- Goh S. L.; Wang Q.; Byrnes L. J.; Sondermann H. (2012) Versatile Membrane Deformation Potential of Activated Pacsin. PLoS One 7, e51628. 23236520 PMC3517540
- Spector A. A.; Yorek M. A. (1985) Membrane lipid composition and cellular function. J. Lipid Res. 26, 1015– 1035. 3906008
- Kishore A. I.; Prestegard J. H. (2003) Molecular orientation and conformation of phosphatidylinositides in membrane mimetics using variable angle sample spinning (VASS) NMR. Biophys. J. 85, 3848– 3857. 14645074 PMC1303686
- Ambroso M. R.; Hegde B. G.; Langen R. (2014) Endophilin A1 induces different membrane shapes using a conformational switch that is regulated by phosphorylation. Proc. Natl. Acad. Sci. U.S.A. 111, 6982– 6987. 24778241 PMC4024918
- Harder D. R. (1983) Heterogeneity of Membrane-Properties in Vascular Muscle-Cells from Various Vascular Beds. Fed. Proc. 42, 253– 256. 6337065
- Jungbluth H.; Wallgren-Pettersson C.; Laporte J. (2008) Centronuclear (myotubular) myopathy. Orphanet J. Rare Dis. 3, 26. 18817572 PMC2572588
- Romero N. B. (2010) Centronuclear myopathies: A widening concept. Neuromuscul. Disord. 20, 223– 228. 20181480
- Toussaint A.; Cowling B. S.; Hnia K.; Mohr M.; Oldfors A.; Schwab Y.; Yis U.; Maisonobe T.; Stojkovic T.; Wallgren-Pettersson C.; Laugel V.; Echaniz-Laguna A.; Mandel J.-L.; Nishino I.; Laporte J. (2011) Defects in amphiphysin 2 (BIN1) and triads in several forms of centronuclear myopathies. Acta Neuropathol. 121, 253– 266. 20927630
- Boehm J.; Yis U.; Ortac R.; Cakmakci H.; Kurul S. H.; Dirik E.; Laporte J. (2010) Case report of intrafamilial variability in autosomal recessive centronuclear myopathy associated to a novel BIN1 stop mutation. Orphanet J. Rare Dis. 5, 35. 21129173 PMC3014877
- Claeys K. G.; Maisonobe T.; Boehm J.; Laporte J.; Hezode M.; Romero N. B.; Brochier G.; Bitoun M.; Carlier R. Y.; Stojkovic T. (2010) Phenotype of a Patient with Recessive Centronuclear Myopathy and a Novel Bin1 mutation. Neurology 74, 519– 521. 20142620
- Nicot A.-S.; Toussaint A.; Tosch V.; Kretz C.; Wallgren-Pettersson C.; Iwarsson E.; Kingston H.; Garnier J.-M.; Biancalana V.; Oldfors A.; Mandel J.-L.; Laporte J. (2007) Mutations in amphiphysin 2 (BIN1) disrupt interaction with dynamin 2 and cause autosomal recessive centronuclear myopathy. Nat. Genet. 39, 1134– 1139. 17676042
- Durieux A.-C.; Prudhon B.; Guicheney P.; Bitoun M. (2010) Dynamin 2 and human diseases. J. Mol. Med. 88, 339– 350. 20127478
- Demonbreun A. R.; McNally E. M. (2014) Dynamin 2 the rescue for centronuclear myopathy. J. Clin. Invest. 124, 976– 978. 24569368 PMC3938257
- Frost A.; Perera R.; Roux A.; Spasov K.; Destaing O.; Egelman E. H.; De Camilli P.; Unger V. M. (2008) Structural basis of membrane invagination by F-BAR domains. Cell 132, 807– 817. 18329367 PMC2384079
- Roux A.; Koster G.; Lenz M.; Sorre B.; Manneville J.-B.; Nassoy P.; Bassereau P. (2010) Membrane curvature controls dynamin polymerization. Proc. Natl. Acad. Sci. U.S.A. 107, 4141– 4146. 20160074 PMC2840091
- Zhao H.; Michelot A.; Koskela E. V.; Tkach V.; Stamou D.; Drubin D. G.; Lappalainen P. (2013) Membrane-Sculpting BAR Domains Generate Stable Lipid Microdomains. Cell Rep. 4, 1213– 1223. 24055060 PMC4105227
- Kim A. S.; Kakalis L. T.; Abdul-Manan M.; Liu G. A.; Rosen M. K. (2000) Autoinhibition and activation mechanisms of the Wiskott-Aldrich syndrome protein. Nature 404, 151– 158. 10724160
- Abdul-Manan N.; Aghazadeh B.; Liu G. A.; Majumdar A.; Ouerfelli O.; Siminovitch K. A.; Rosen M. K. (1999) Structure of Cdc42 in complex with the GTPase-binding domain of the ‘Wiskott-Aldrich syndrome’ protein. Nature 399, 379– 383. 10360578
- Farsad K.; Slepnev V.; Ochoa G. C.; Daniell L.; Haucke V.; De Camilli P. (2004) A putative role for intramolecular regulatory mechanisms in the adaptor function of amphiphysin in endocytosis. Neuropharmacology 46, 297– 297. 14529717
- Royer B.; Hnia K.; Gavriilidis C.; Tronchere H.; Tosch V.; Laporte J. (2013) The myotubularin-amphiphysin 2 complex in membrane tubulation and centronuclear myopathies. EMBO Rep. 14, 907– 915. 23917616 PMC3807231
Cited by
Sorted by citations
BIN1 regulates BACE1 intracellular trafficking and amyloid-β production
Miyagawa, T., Ebinuma, I., Morohashi, Y., Hori, Y., Young Chang, M., Hattori, H., Maehara, T., Yokoshima, S., Fukuyama, T., Tsuji, S., et al. (2016) · Human Molecular Genetics · doi:10.1093/hmg/ddw146 · Cited by 95 · see citing works
- Authors
- Wu, T., & Baumgart, T.
- Affiliations
- University of Pennsylvania (US)
- Corresponding author
- Baumgart, Tobias
- ORCID
- Baumgart, Tobias
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2014-10-28
- Volume
- 53
- Issue
- 46
- Pages
- 7297-7309
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- PMC
- PMC4245986
- OpenAlex
- W2332728879
- Cited by
- 47
- References
- 2
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 10 · 2023: 2 · 2022: 6 · 2021: 3 · 2020: 5 · 2019: 2 · 2018: 5 · 2017: 3 · 2016: 4 · 2015: 1
- FWCI
- 1.33
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Biochemistry (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of General Medical Sciences (R01 GM097552)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- BIN1, T-tubules, excitation-contraction coupling, BAR domain, SH3 domain, dynamin 2, phosphatidylinositol 4,5-bisphosphate, autoinhibition, centronuclear myopathy, striated muscle, membrane deformation
- MeSH terms
- Amino Acid Sequence, Cell Line, Cell Membrane, Humans, Liposomes, Molecular Sequence Data, Nuclear Proteins, Phosphatidylinositols, src Homology Domains, Tumor Suppressor Proteins, Dynamin II, Adaptor Proteins, Signal Transducing, Protein Interaction Maps
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review