The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Pharmer: Efficient and Exact Pharmacophore Search
Open accessAbstract
Pharmacophore search is a key component of many drug discovery efforts. Pharmer is a new computational approach to pharmacophore search that scales with the breadth and complexity of the query, not the size of the compound library being screened. Two novel methods for organizing pharmacophore data, the Pharmer KDB-tree and Bloom fingerprints, enable Pharmer to perform an exact pharmacophore search of almost two million structures in less than a minute. In general, Pharmer is more than an order of magnitude faster than existing technologies. The complete source code is available under an open-source license at http://pharmer.sourceforge.net .
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Cites
Why do we need so many chemical similarity search methods?
Sheridan, R. (2002) · Drug Discovery Today · doi:10.1016/s1359-6446(02)02411-x · Cited by 412
Cited by
Chen, Y.-C. (2015) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2014.12.001 · Cited by 611
Pharmit: interactive exploration of chemical space
Sunseri, J., & Koes, D. R. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw287 · Cited by 420
Self-citationNext generation 3D pharmacophore modeling
Schaller, D., Šribar, D., Noonan, T., Deng, L., Nguyen, T. N., Pach, S., Machalz, D., Bermudez, M., & Wolber, G. (2020) · WIREs Computational Molecular Science · doi:10.1002/wcms.1468 · Cited by 269
Structural and thermodynamic framework for PIEZO1 modulation by small molecules
Jiang, W., Wijerathne, T. D., Zhang, H., Lin, Y.-C., Jo, S., Im, W., Lacroix, J. J., & Luo, Y. L. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2310933120 · Cited by 44
Metadata
- Authors
- Koes, D. R., & Camacho, C. J.
- Venue
- Journal of Chemical Information and Modeling
- Publisher
- American Chemical Society (ACS)
- Published
- 2011-06-02
- Volume
- 51
- Issue
- 6
- Pages
- 1307-1314
- ISSN
- 1549-9596 (ISSN-L)
- 1549-960X
- OpenAlex
- W2016155858
- Cited by
- 172
- References
- 1
- FWCI
- 5.68
- Type
- journal article
- Language
- en
- Open access
- green
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- Koes, D. R., & Camacho, C. J. (2011). Pharmer: Efficient and Exact Pharmacophore Search. Journal of Chemical Information and Modeling. https://doi.org/10.1021/ci200097m
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
