Single Cell Optical Imaging and Spectroscopy

Fluorescence resonance energy transfer in living cells reveals dynamic membrane changes in the initiation of B cell signaling

Sohn, H. W., Tolar, P., Jin, T., & Pierce, S. K. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509858103 · Cited by 114

Chemistry and Biology in Femtoliter and Picoliter Volume Droplets

Chiu, D. T., & Lorenz, R. M. (2009) · Accounts of Chemical Research · doi:10.1021/ar8002464 · Cited by 113

Time-Resolved Three-Dimensional Molecular Tracking in Live Cells

Wells, N. P., Lessard, G. A., Goodwin, P. M., Phipps, M. E., Cutler, P. J., Lidke, D. S., Wilson, B. S., & Werner, J. H. (2010) · Nano Letters · doi:10.1021/nl103247v · Cited by 113

Coherent anti‐stokes Raman scattering imaging of myelin degradation reveals a calcium‐dependent pathway in lyso‐PtdCho‐induced demyelination

Fu, Y., Wang, H., Huff, T. B., Shi, R., & Cheng, J. (2007) · Journal of Neuroscience Research · doi:10.1002/jnr.21403 · Cited by 113

Pure optical photoacoustic microscopy

Xie, Z., Chen, S., Ling, T., Guo, L. J., Carson, P. L., & Wang, X. (2011) · Optics Express · doi:10.1364/oe.19.009027 · Cited by 112

Identification of cholesterol crystals in plaques of atherosclerotic mice using hyperspectral CARS imaging

Lim, R. S., Suhalim, J. L., Miyazaki‐Anzai, S., Miyazaki, M., Levi, M., Potma, E. O., & Tromberg, B. J. (2011) · Journal of Lipid Research · doi:10.1194/jlr.m018077 · Cited by 111

Quantum-dot-assisted characterization of microtubule rotations during cargo transport

Nitzsche, B., Ruhnow, F., & Diez, S. (2008) · Nature Nanotechnology · doi:10.1038/nnano.2008.216 · Cited by 110

Imaging Intracellular Protein Dynamics by Spinning Disk Confocal Microscopy

Stehbens, S. J., Pemble, H., Murrow, L. M., & Wittmann, T. (2012) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/b978-0-12-391857-4.00015-x · Cited by 109

Thin-sheet laser imaging microscopy for optical sectioning of thick tissues

Santi, P. A., Johnson, S. B., Hillenbrand, M., Grandpre, P. Z., Glass, T. J., & Leger, J. R. (2009) · BioTechniques · doi:10.2144/000113087 · Cited by 109

Hybridization kinetics is different inside cells

Schoen, I., Krammer, H., & Braun, D. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0901313106 · Cited by 109

Multifocal multiphoton microscopy based on multianode photomultiplier tubes

Kim, K. H., Buehler, C., Bahlmann, K., Ragan, T. M., Lee, W.-C. A., Nedivi, E., Heffer, E. L., Fantini, S., & So, P. T. C. (2007) · Optics Express · doi:10.1364/oe.15.011658 · Cited by 109

Multiplexed FRET to Image Multiple Signaling Events in Live Cells

Grant, D. M., Zhang, W., McGhee, E. J., et al. (2008) · Biophysical Journal · doi:10.1529/biophysj.108.139204 · Cited by 108

A torque component present in mitotic kinesin Eg5 revealed by three-dimensional tracking

Yajima, J., Mizutani, K., & Nishizaka, T. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1491 · Cited by 108

GFP-based FRET analysis in live cells

Takanishi, C. L., Bykova, E. A., Cheng, W., & Zheng, J. (2006) · Brain Research · doi:10.1016/j.brainres.2006.01.119 · Cited by 108

Vibrational imaging of tablets by epi-detected stimulated Raman scattering microscopy

Slipchenko, M. N., Chen, H., Ely, D. R., Jung, Y., Carvajal, M. T., & Cheng, J. (2010) · The Analyst · doi:10.1039/c0an00252f · Cited by 108

Molecular Imaging with SERS‐Active Nanoparticles

Zhang, Y., Hong, H., Myklejord, D. V., & Cai, W. (2011) · Small · doi:10.1002/smll.201100597 · Cited by 107

Practical and reliable FRET/FLIM pair of fluorescent proteins

Shcherbo, D. S., Souslova, E. A., Goedhart, J., Chepurnykh, T. V., Gaintzeva, A., Shemiakina, I. I., Gadella, T. W. J., Lukyanov, S., & Chudakov, D. M. (2009) · BMC Biotechnology · doi:10.1186/1472-6750-9-24 · Cited by 106

Methods for visualizing RNA processing and transport pathways in living cells

Dirks, R. W., Molenaar, C., & Tanke, H. J. (2000) · Histochemistry and Cell Biology · doi:10.1007/s004180000214 · Cited by 105

Real-Time Molecular Imaging throughout the Entire Cell Cycle by Targeted Plasmonic-Enhanced Rayleigh/Raman Spectroscopy

Kang, B., Austin, L. A., & El‐Sayed, M. A. (2012) · Nano Letters · doi:10.1021/nl3027586 · Cited by 105

Resolving Sub-Diffraction Limit Encounters in Nanoparticle Tracking Using Live Cell Plasmon Coupling Microscopy

Rong, G., Wang, H., Skewis, L. R., & Reinhard, B. M. (2008) · Nano Letters · doi:10.1021/nl802058q · Cited by 105

Protein–Membrane Interaction Probed by Single Plasmonic Nanoparticles

Baciu, C. L., Becker, J., Janshoff, A., & Sönnichsen, C. (2008) · Nano Letters · doi:10.1021/nl080805l · Cited by 104

Basic Electromagnetic Theory of SERS

Etchegoin, P., & Ru, E. C. L. (2010) · doi:10.1002/9783527632756.ch1 · Cited by 103

STED-SPIM: Stimulated Emission Depletion Improves Sheet Illumination Microscopy Resolution

Friedrich, M., Gan, Q., Ermolayev, V., & Harms, G. S. (2011) · Biophysical Journal · doi:10.1016/j.bpj.2010.12.3748 · Cited by 102

Flower-shaped gold nanoparticles: synthesis, characterization and their application as SERS-active tags inside living cells

Boca, S., Rugină, D. O., Pintea, A., Barbu–Tudoran, L., & Aştilean, S. (2010) · Nanotechnology · doi:10.1088/0957-4484/22/5/055702 · Cited by 102

New insights into an enigmatic tumour suppressor

Ratcliffe, P. J. (2003) · Nature Cell Biology · doi:10.1038/ncb0103-7 · Cited by 101

Dynamic polymorphism of single actin molecules in the actin filament

Kozuka, J., Yokota, H., Arai, Y., Ishii, Y., & Yanagida, T. (2006) · Nature Chemical Biology · doi:10.1038/nchembio763 · Cited by 101

Ligand-Bound Quantum Dot Probes for Studying the Molecular Scale Dynamics of Receptor Endocytic Trafficking in Live Cells

Rajan, S. S., Liu, H. Y., & Vu, T. Q. (2008) · ACS Nano · doi:10.1021/nn700399e · Cited by 101

Electrophysiological Characterization of Membrane Disruption by Nanoparticles

de Planque, M. R. R., Aghdaei, S., Roose, T., & Morgan, H. (2011) · ACS Nano · doi:10.1021/nn103320j · Cited by 101

Migrating fibroblasts reorient directionality by a metastable, PI3K-dependent mechanism

Welf, E. S., Ahmed, S., Johnson, H. E., Melvin, A. T., & Haugh, J. M. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201108152 · Cited by 100

Optical Lock-In Detection of FRET Using Synthetic and Genetically Encoded Optical Switches

Mao, S., Benninger, R. K. P., Yan, Y., et al. (2008) · Biophysical Journal · doi:10.1529/biophysj.107.124859 · Cited by 100

Quantitative FRET Analysis by Fast Acquisition Time Domain FLIM at High Spatial Resolution in Living Cells

Padilla‐Parra, S., Audugé, N., Coppey‐Moisan, M., & Tramier, M. (2008) · Biophysical Journal · doi:10.1529/biophysj.108.131276 · Cited by 99

Glutamate Excitotoxicity Inflicts Paranodal Myelin Splitting and Retraction

Fu, Y., Sun, W., Shi, Y., Shi, R., & Cheng, J. (2009) · PLoS ONE · doi:10.1371/journal.pone.0006705 · Cited by 99

Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor

Fosbrink, M. D., Aye-Han, N.-N., Cheong, R., Levchenko, A., & Zhang, J. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909671107 · Cited by 98

Quantitative Comparison of Different Fluorescent Protein Couples for Fast FRET-FLIM Acquisition

Padilla‐Parra, S., Audugé, N., Lalucque, H., Mevel, J., Coppey‐Moisan, M., & Tramier, M. (2009) · Biophysical Journal · doi:10.1016/j.bpj.2009.07.044 · Cited by 97

Nanoshells for Surface-Enhanced Raman Spectroscopy in Eukaryotic Cells: Cellular Response and Sensor Development

Ochsenkühn, M. A., Jess, P. R. T., Stoquert, H. C., Dholakia, K., & Campbell, C. J. (2009) · ACS Nano · doi:10.1021/nn900681c · Cited by 97

Comparison of three‐dimensional imaging properties between two‐photon and single‐photon fluorescence microscopy

Gu, M., & Sheppard, C. J. R. (1995) · Journal of Microscopy · doi:10.1111/j.1365-2818.1995.tb03543.x · Cited by 97

Nanometer-scale mapping and single-molecule detection with color-coded nanoparticle probes

Agrawal, A., Deo, R. P., Wang, G. D., Wang, M. D., & Nie, S. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712351105 · Cited by 96

Physical enviroment of 2-D animal cell aggregates formed in a short pathlength ultrasound standing wave trap

Bazou, D., Kuznetsova, L. A., & Coakley, W. T. (2005) · Ultrasound in Medicine & Biology · doi:10.1016/j.ultrasmedbio.2004.12.007 · Cited by 95

Fluorescence microscopy for simultaneous observation of 3D orientation and movement and its application to quantum rod-tagged myosin V

Ohmachi, M., Komori, Y., Iwane, A. H., Fujii, F., Jin, T., & Yanagida, T. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1118472109 · Cited by 95

Dopamine and Amphetamine Rapidly Increase Dopamine Transporter Trafficking to the Surface: Live-Cell Imaging Using Total Internal Reflection Fluorescence Microscopy

Furman, C. A., Chen, R., Guptaroy, B., Zhang, M., Holz, R. W., & Gnegy, M. E. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.5386-08.2009 · Cited by 95

Nonlinear Optical Imaging and Raman Microspectrometry of the Cell Nucleus throughout the Cell Cycle

Pliss, A., Kuzmin, A. N., Kachynski, A. V., & Prasad, P. N. (2010) · Biophysical Journal · doi:10.1016/j.bpj.2010.06.069 · Cited by 94

Raman spectroscopy and CARS microscopy of stem cells and their derivatives

Downes, A., Mouras, R., Bagnaninchi, P., & Elfick, A. P. D. (2011) · Journal of Raman Spectroscopy · doi:10.1002/jrs.2975 · Cited by 94

A quantitative protocol for dynamic measurements of protein interactions by Förster resonance energy transfer-sensitized fluorescence emission

Elder, A. D., Domin, A., Schierle, G. S. K., et al. (2008) · Journal of The Royal Society Interface · doi:10.1098/rsif.2008.0381.focus · Cited by 94

Reactive Semiconductor Nanocrystals for Chemoselective Biolabeling and Multiplexed Analysis

Jennings, T. L., Becker-Catania, S. G., Triulzi, R. C., Tao, G., Scott, B., Sapsford, K. E., Spindel, S., Oh, E., Jain, V., Delehanty, J. B., et al. (2011) · ACS Nano · doi:10.1021/nn201050g · Cited by 93

Single-Molecule Imaging of Cell Surfaces Using Near-Field Nanoscopy

Hinterdorfer, P., Parajo, M. F. G., & Dufrêne, Y. F. (2011) · Accounts of Chemical Research · doi:10.1021/ar2001167 · Cited by 92

Gold Nanoparticle Growth Monitored in situ Using a Novel Fast Optical Single-Particle Spectroscopy Method

Becker, J., Schubert, O., & Sönnichsen, C. (2007) · Nano Letters · doi:10.1021/nl070627g · Cited by 92

Photoactivatable Fluorescent Protein mEos2 Displays Repeated Photoactivation after a Long-Lived Dark State in the Red Photoconverted Form

Annibale, P., Scarselli, M., Kodiyan, A., & Rađenović, A. (2010) · The Journal of Physical Chemistry Letters · doi:10.1021/jz1003523 · Cited by 92

Molecular Photoacoustic Tomography with Colloidal Nanobeacons

Pan, D., Pramanik, M., Senpan, A., Yang, X., Song, K. H., Scott, M. J., Zhang, H., Gaffney, P. J., Wickline, S. A., Wang, L. V., et al. (2009) · Angewandte Chemie International Edition · doi:10.1002/anie.200805947 · Cited by 92

Defocused Wide‐field Imaging Unravels Structural and Temporal Heterogeneity in Complex Systems

Dedecker, P., Muls, B., Deres, A., Uji‐i, H., Hotta, J., Sliwa, M., Soumillion, J., Müllen, K., Enderlein, J., & Hofkens, J. (2009) · Advanced Materials · doi:10.1002/adma.200801873 · Cited by 90

Direct observation of stepped proteolipid ring rotation in E. coli FoF1‐ATP synthase

Ishmukhametov, R. R., Hornung, T., Spetzler, D. B., & Frasch, W. D. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.259 · Cited by 88

Single cell analysis using surface enhanced Raman scattering (SERS) tags

Nolan, J. P., Duggan, E., Liu, E., Condello, D., Dave, I., & Stoner, S. A. (2012) · Methods · doi:10.1016/j.ymeth.2012.03.024 · Cited by 87

Single-Molecule-Based Super-Resolution Images in the Presence of Multiple Fluorophores

Simonson, P. D., Rothenberg, E., & Selvin, P. R. (2011) · Nano Letters · doi:10.1021/nl203560r · Cited by 87

Three-Dimensional Tracking of Single Fluorescent Particles with Submillisecond Temporal Resolution

Juette, M. F., & Bewersdorf, J. (2010) · Nano Letters · doi:10.1021/nl1028792 · Cited by 85

Characterization of an improved donor fluorescent protein for Forster resonance energy transfer microscopy

Day, R. N., Booker, C. F., & Periasamy, A. (2008) · Journal of Biomedical Optics · doi:10.1117/1.2939094 · Cited by 85

Optical imaging of non-fluorescent nanoparticleprobes in live cells

Wang, G., Stender, A. S., Sun, W. Y., & Fang, N. (2009) · The Analyst · doi:10.1039/b916395f · Cited by 85

Direct Investigation of Intracellular Presence of Gold Nanoparticles via Photothermal Heterodyne Imaging

Leduc, C., Jung, J., Carney, R. P., Stellacci, F., & Lounis, B. (2011) · ACS Nano · doi:10.1021/nn1023285 · Cited by 84

Exploring uptake mechanisms of oral nanomedicines using multimodal nonlinear optical microscopy

Garrett, N., Lalatsa, A., Uchegbu, I. F., Schätzlein, A. G., & Moger, J. (2012) · Journal of Biophotonics · doi:10.1002/jbio.201200006 · Cited by 84

Application of second harmonic imaging microscopy to assess structural changes in optic nerve head structure ex vivo

Brown, D. J., Morishige, N., Neekhra, A., Minckler, D. S., & Jester, J. V. (2007) · Journal of Biomedical Optics · doi:10.1117/1.2717540 · Cited by 84

Global analysis of Förster resonance energy transfer in live cells measured by fluorescence lifetime imaging microscopy exploiting the rise time of acceptor fluorescence

Laptenok, S. P., Borst, J. W., Mullen, K. M., et al. (2010) · Physical Chemistry Chemical Physics · doi:10.1039/b919700a · Cited by 84

Breaking the diffraction resolution barrier in far-field microscopy by molecular optical bistability

Bossi, M. L., Fölling, J., Dyba, M., Westphal, V., & Hell, S. W. (2006) · New Journal of Physics · doi:10.1088/1367-2630/8/11/275 · Cited by 83

Endocytosis of a single mesoporous silica nanoparticle into a human lung cancer cell observed by differential interference contrast microscopy

Sun, W. Y., Fang, N., Trewyn, B. G., Tsunoda, M., Slowing, I. I., Lin, V. S. ‐., & Yeung, E. S. (2008) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-008-2162-1 · Cited by 82

Distinguishing breast cancer cells using surface-enhanced Raman scattering

Yang, J. H., Wang, Z., Zong, S., Song, C., Zhang, R., & Cui, Y. (2011) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-011-5577-z · Cited by 82

A Microfluidic Device for Electrofusion of Biological Vesicles

Tresset, G., & Takeuchi, S. (2004) · Biomedical Microdevices · doi:10.1023/b:bmmd.0000042050.95246.af · Cited by 82

Bioanalytical application of surface‐ and tip‐enhanced R aman spectroscopy

Pahlow, S., März, A., Seise, B., Hartmann, K., Freitag, I., Kämmer, E., Böhme, R., Deckert, V., Weber, K., Cialla‐May, D., et al. (2012) · Engineering in Life Sciences · doi:10.1002/elsc.201100056 · Cited by 80

Engineering FRET Constructs Using CFP and YFP

Shimozono, S., & Miyawaki, A. (2008) · Methods in cell biology · doi:10.1016/s0091-679x(08)85016-9 · Cited by 79

Quasi‐Epitaxial Growth of Ni Nanoshells on Au Nanorods

Grzelczak, M., Rodríguez‐González, B., Pérez‐Juste, J., et al. (2007) · Advanced Materials · doi:10.1002/adma.200700467 · Cited by 79

Differential association of adipophilin and TIP47 proteins with cytoplasmic lipid droplets in mouse enterocytes during dietary fat absorption

Lee, B., Zhu, J., Wolins, N. E., Cheng, J., & Buhman, K. K. (2009) · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids · doi:10.1016/j.bbalip.2009.08.002 · Cited by 77

Selective imaging of saturated and unsaturated lipids by wide-field CARS-microscopy

Heinrich, C., Hofer, A., Ritsch, A., Ciardi, C., Bernet, S., & Ritsch‐Marte, M. (2008) · Optics Express · doi:10.1364/oe.16.002699 · Cited by 76

Imaging of Dynamic Secretory Vesicles in Living Pollen Tubes of Picea meyeri Using Evanescent Wave Microscopy

Wang, X., Teng, Y., Wang, Q., Li, X., Sheng, X., Zheng, M., Šamaj, J., Baluška, F., & Lin, J. (2006) · PLANT PHYSIOLOGY · doi:10.1104/pp.106.080168 · Cited by 76

Nanoprobes for intracellular and single cell surface‐enhanced Raman spectroscopy (SERS)

Vitol, E. A., Orynbayeva, Z., Friedman, G., & Gogotsi, Y. G. (2012) · Journal of Raman Spectroscopy · doi:10.1002/jrs.3100 · Cited by 74

Rotational dynamics of cargos at pauses during axonal transport

Gu, Y. H., Sun, W., Wang, G., Jeftinija, K., Jeftinija, S., & Fang, N. (2012) · Nature Communications · doi:10.1038/ncomms2037 · Cited by 74

Energy migration alters the fluorescence lifetime of Cerulean: implications for fluorescence lifetime imaging Forster resonance energy transfer measurements

Koushik, S. V., & Vogel, S. S. (2008) · Journal of Biomedical Optics · doi:10.1117/1.2940367 · Cited by 73

Same-Single-Cell Analysis for the Study of Drug Efflux Modulation of Multidrug Resistant Cells Using a Microfluidic Chip

Li, X., Ling, V. W. T., & Li, P. C. H. (2008) · Analytical Chemistry · doi:10.1021/ac800231k · Cited by 73

Coherent Raman Scattering Microscopy

Volkmer, A. (2009) · Biological and medical physics series · doi:10.1007/978-3-642-02649-2_6 · Cited by 72

Total internal reflection Raman spectroscopy

Woods, D. A., & Bain, C. D. (2011) · The Analyst · doi:10.1039/c1an15722a · Cited by 72

Multiplex Charge-Transfer Interactions between Quantum Dots and Peptide-Bridged Ruthenium Complexes

Medintz, I. L., Farrell, D. F., Susumu, K., Trammell, S. A., Deschamps, J. R., Brunel, F. M., Dawson, P. E., & Mattoussi, H. M. (2009) · Analytical Chemistry · doi:10.1021/ac900412j · Cited by 71

Imaging the intact guinea pig tympanic bulla by orthogonal-plane fluorescence optical sectioning microscopy

Voie, A. H. (2002) · Hearing Research · doi:10.1016/s0378-5955(02)00493-8 · Cited by 71

Single Amino Acid Replacement Makes Aequorea victoria Fluorescent Proteins Reversibly Photoswitchable

Bizzarri, R., Serresi, M., Cardarelli, F., Abbruzzetti, S., Campanini, B., Viappiani, C., & Beltram, F. (2009) · Journal of the American Chemical Society · doi:10.1021/ja9014953 · Cited by 70

A simple scanless two-photon fluorescence microscope using selective plane illumination

Palero, J. A., Santos, S. I. C. O., Artigas, D., & Loza‐Álvarez, P. (2010) · Optics Express · doi:10.1364/oe.18.008491 · Cited by 68

In Situ Analysis of Living Embryonic Stem Cells by Coherent Anti-Stokes Raman Microscopy

Konorov, S. O., Glover, C. H., Piret, J. M., et al. (2007) · Analytical Chemistry · doi:10.1021/ac070544k · Cited by 68

Specific Pathogen Detection Using Bioorthogonal Chemistry and Diagnostic Magnetic Resonance

Liong, M., Fernández-Suárez, M., Issadore, D., Min, C., Tassa, C., Reiner, T., Fortune, S. M., Toner, M., Lee, H., & Weissleder, R. (2011) · Bioconjugate Chemistry · doi:10.1021/bc200490r · Cited by 67

Activity-based Protein Profiling Identifies a Host Enzyme, Carboxylesterase 1, Which Is Differentially Active during Hepatitis C Virus Replication

Blais, D. R., Lyn, R. K., Joyce, M., Rouleau, Y., Steenbergen, R. D. M., Barsby, N. L., Zhu, L.-F., Pegoraro, A. F., Stolow, A., Tyrrell, D., et al. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.135483 · Cited by 66

Label-Free Imaging of Lipid-Droplet Intracellular Motion in Early Drosophila Embryos Using Femtosecond-Stimulated Raman Loss Microscopy

Dou, W., Zhang, D., Jung, Y., et al. (2012) · Biophysical Journal · doi:10.1016/j.bpj.2012.01.057 · Cited by 66

Quantitative ratiometric discrimination between noncancerous and cancerous prostate cells based on neuropilin-1 overexpression

Pallaoro, A., Braun, G. B., & Moskovits, M. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109490108 · Cited by 65

Intracellular Imaging of HCV RNA and Cellular Lipids by Using Simultaneous Two‐Photon Fluorescence and Coherent Anti‐Stokes Raman Scattering Microscopies

Nan, X., Tonary, A. M., Stolow, A., Xie, X. S., & Pezacki, J. P. (2006) · ChemBioChem · doi:10.1002/cbic.200600330 · Cited by 64

Combining Immunolabeling and Surface-Enhanced Raman Spectroscopy on Cell Membranes

Hodges, M., Kelly, J. G., Bentley, A. J., et al. (2011) · ACS Nano · doi:10.1021/nn202652h · Cited by 63

Surveillance of siRNA integrity by FRET imaging

Järve, A., Müller, J., Kim, I.-H., Rohr, K., MacLean, C., Fricker, G., Massing, U., Eberle, F., Dalpke, A. H., Fischer, R., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm694 · Cited by 62

Supported Membranes Embedded with Fixed Arrays of Gold Nanoparticles

Lohmüller, T., Triffo, S. B., O’Donoghue, G. P., Xu, Q., Coyle, M. P., & Groves, J. T. (2011) · Nano Letters · doi:10.1021/nl202847t · Cited by 62

Dynamics of lipid droplets induced by the hepatitis C virus core protein

Lyn, R. K., Kennedy, D. C., Stolow, A., Ridsdale, A., & Pezacki, J. P. (2010) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2010.07.101 · Cited by 62

Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thaliana

Wan, Y., Ash, W. M., Fan, L., Hao, H.-Q., Kim, M. K., & Lin, J. (2011) · Plant Methods · doi:10.1186/1746-4811-7-27 · Cited by 61

Engineering Redox-Sensitive Linkers for Genetically Encoded FRET-Based Biosensors

Kolossov, V. L., Spring, B. Q., Sokolowski, A., Conour, J. E., Clegg, R. M., Kenis, P. J. A., & Gaskins, H. R. (2008) · Experimental Biology and Medicine · doi:10.3181/0707-rm-192 · Cited by 60

PALMER: a method capable of parallel localization of multiple emitters for high-density localization microscopy

Wang, Y., Quan, T., Zeng, S., & Huang, Z. (2012) · Optics Express · doi:10.1364/oe.20.016039 · Cited by 59

Second-harmonic generation of biological interfaces: probing the membrane protein bacteriorhodopsin and imaging membrane potential around GFP molecules at specific sites in neuronal cells of C. elegans

Lewis, A., Khatchatouriants, A., Treinin, M., Chen, Z., Peleg, G., Friedman, N., Bouevitch, O., Rothman, Z., Loew, L. M., & Sheres, M. (1999) · Chemical Physics · doi:10.1016/s0301-0104(99)00128-7 · Cited by 58

Performance limits on three-dimensional particle localization in photon-limited microscopy

Grover, G., Pavani, S. R. P., & Piestun, R. (2010) · Optics Letters · doi:10.1364/ol.35.003306 · Cited by 58

Real-Time CARS Imaging Reveals a Calpain-Dependent Pathway for Paranodal Myelin Retraction during High-Frequency Stimulation

Huff, T. B., Shi, Y., Sun, W., Wu, W., Shi, R., & Cheng, J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017176 · Cited by 58

Imaging exocytosis of ATP-containing vesicles with TIRF microscopy in lung epithelial A549 cells

Akopova, I., Tatur, S., Grygorczyk, M., Luchowski, R., Gryczyński, I., Gryczynski, Z. K., Borejdo, J., & Grygorczyk, R. (2011) · Purinergic Signalling · doi:10.1007/s11302-011-9259-2 · Cited by 58

Pharmaceutical applications of non-linear imaging

Strachan, C. J., Windbergs, M., & Offerhaus, H. L. (2010) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2010.12.017 · Cited by 58

Rapid Development of Genetically Encoded FRET Reporters

Piljić, A., de Diego, I., Wilmanns, M., & Schultz, C. (2011) · ACS Chemical Biology · doi:10.1021/cb100402n · Cited by 57

Direct imaging of the disruption of hepatitis C virus replication complexes by inhibitors of lipid metabolism

Lyn, R. K., Kennedy, D. C., Sagan, S. M., Blais, D. R., Rouleau, Y., Pegoraro, A. F., Xie, X. S., Stolow, A., & Pezacki, J. P. (2009) · Virology · doi:10.1016/j.virol.2009.08.022 · Cited by 57

Three-Dimensional Super-Localization and Tracking of Single Gold Nanoparticles in Cells

Gu, Y. H., Di, X., Sun, W. Y., Wang, G., & Fang, N. (2012) · Analytical Chemistry · doi:10.1021/ac300249d · Cited by 57

Infrared nonlinear optical measurements of membrane potential in photoreceptor cells

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Introduction to Confocal Microscopy

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Single-Cell Profiling Reveals the Origin of Phenotypic Variability in Adipogenesis

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Dynamic reorganization of Eg5 in the mammalian spindle throughout mitosis requires dynein and TPX2

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Carbon-bonded silver nanoparticles: alkyne-functionalized ligands for SERS imaging of mammalian cells

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Spectral and 3-Dimensional Tracking of Single Gold Nanoparticles in Living Cells Studied by Rayleigh Light Scattering Microscopy

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Disk-Scanning Confocal Microscopy

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Quantum Dots with Multivalent and Compact Polymer Coatings for Efficient Fluorescence Resonance Energy Transfer and Self-Assembled Biotagging

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satFRET: estimation of Förster resonance energy transfer by acceptor saturation

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Label-Free Analysis of Breast Tissue Polarity by Raman Imaging of Lipid Phase

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One- and Two-Photon Live Cell Imaging Using a Mutant SNAP-Tag Protein and Its FRET Substrate Pairs

Zhang, C., Li, L., Chen, G. Y. J., Xu, Q., & Yao, S. Q. (2011) · Organic Letters · doi:10.1021/ol201430x · Cited by 50

Estimating protein-protein interaction affinity in living cells using quantitative Förster resonance energy transfer measurements

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Multiphoton microscopy: a new paradigm in dermatological imaging.

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Lens Aberrations in Confocal Fluorescence Microscopy

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Raman Chemical Imaging of Chromate Reduction Sites in a Single Bacterium Using Intracellularly Grown Gold Nanoislands

Ravindranath, S. P., Henne, K. L., Thompson, D. K., & Irudayaraj, J. (2011) · ACS Nano · doi:10.1021/nn201105r · Cited by 46

Insights from a Nanoparticle Minuet: Two-Dimensional Membrane Profiling through Silver Plasmon Ruler Tracking

Rong, G., Wang, H., & Reinhard, B. M. (2009) · Nano Letters · doi:10.1021/nl903350f · Cited by 46

A Computational Tool for Designing FRET Protein Biosensors by Rigid-Body Sampling of Their Conformational Space

Pham, E., Chiang, J. J.-H., Li, I. T. S., Shum, W., & Truong, K. (2007) · Structure · doi:10.1016/j.str.2007.03.009 · Cited by 46

Characterization of nanoprobe uptake in single cells: spatial and temporal tracking via SERS labeling and modulation of surface charge

Gregas, M. K., Yan, F., Scaffidi, J. P., Wang, H., & Vo‐Dinh, T. (2010) · Nanomedicine Nanotechnology Biology and Medicine · doi:10.1016/j.nano.2010.07.009 · Cited by 45

Application of surface‐enhanced Raman scattering in cell analysis

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Influence of Gold Nanorod Geometry on Optical Response

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Surface-Enhanced Raman Scattering Detection and Tracking of Nanoprobes: Enhanced Uptake and Nuclear Targeting in Single Cells

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Circular permutation of ligand‐binding module improves dynamic range of genetically encoded FRET‐based nanosensor

Okada, S., Ota, K., & Ito, T. (2009) · Protein Science · doi:10.1002/pro.266 · Cited by 43

Some Secrets of Fluorescent Proteins: Distinct Bleaching in Various Mounting Fluids and Photoactivation of Cyan Fluorescent Proteins at YFP-Excitation

Malkani, N., & Schmid, J. A. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018586 · Cited by 42

Imaging of chemical and physical state of individual cellular lipid droplets using multiplex CARS microscopy

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Imaging and Absolute Extinction Cross-Section Measurements of Nanorods and Nanowires through Polarization Modulation Microscopy

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Two-Photon 3D FIONA of Individual Quantum Dots in an Aqueous Environment

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A novel form of Total Internal Reflection Fluorescence Microscopy (LG-TIRFM) reveals different and independent lipid raft domains in living cells

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Imaging Receptor-Mediated Endocytosis with a Polymeric Nanoparticle-Based Coherent Anti-Stokes Raman Scattering Probe

Tong, L., Lu, Y., Lee, R. J., & Cheng, J. (2007) · The Journal of Physical Chemistry B · doi:10.1021/jp073478z · Cited by 40

Second-Harmonic Generation Imaging of Membrane Potential with Retinal Analogues

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Single-molecule detection of DNA via sequence-specific links between F1-ATPase motors and gold nanorod sensors

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Theoretical analysis of a rotating-disk partially confocal scanning microscope

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Real-time optical detection of single human and bacterial viruses based on dark-field interferometry

Mitra, A., Ignatovich, F. V., & Novotný, L. (2011) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2011.11.025 · Cited by 37

In vivo dynamics of enterovirus protease revealed by fluorescence resonance emission transfer (FRET) based on a novel FRET pair

Hsu, Y.-Y., Liu, Y.-N., Wang, W., Kao, F., & Kung, S. (2006) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2006.12.145 · Cited by 36

Applications of fluorescence and bioluminescence resonance energy transfer to drug discovery at G protein coupled receptors

Alvarez‐Curto, E., Pediani, J. D., & Milligan, G. (2010) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-010-3823-4 · Cited by 36

Alternating-Color Quantum Dot Nanocomposites for Particle Tracking

Ruan, G., & Winter, J. O. (2011) · Nano Letters · doi:10.1021/nl103233b · Cited by 34

Mitochondria in tumor cells studied by laser scanning confocal microscopy

VILLA, A. M., & Doglia, S. M. (2004) · Journal of Biomedical Optics · doi:10.1117/1.1646414 · Cited by 32

3-D Reconstruction of Microtubules From Multi-Angle Total Internal Reflection Fluorescence Microscopy Using Bayesian Framework

Yang, Q., Karpikov, A., Toomre, D. K., & Duncan, J. S. (2011) · IEEE Transactions on Image Processing · doi:10.1109/tip.2011.2114359 · Cited by 32

The Structural and Functional Implications of Linked SNARE Motifs in SNAP25

Wang, L., Bittner, M. A., Axelrod, D., & Holz, R. W. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-04-0344 · Cited by 32

CARS microscopy of lipid stores in yeast: the impact of nutritional state and genetic background

Brackmann, C., Norbeck, J., Åkeson, M., Bosch, D., Larsson, C., Gustafsson, L., & Enejder, A. M. K. (2009) · Journal of Raman Spectroscopy · doi:10.1002/jrs.2356 · Cited by 31

Raman detection of localized transferrin-coated gold nanoparticles inside a single cell

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Fabrication of Large-Area, High-Enhancement SERS Substrates with Tunable Interparticle Spacing and Application in Identifying Microorganisms at the Single Cell Level

Chen, J., Shen, B., Qin, G. W., Hu, X., Qian, L., Wang, Z., Li, S., Ren, Y., & Zuo, L. (2012) · The Journal of Physical Chemistry C · doi:10.1021/jp210147c · Cited by 31

Monitoring of local pH in photodynamic therapy‐treated live cancer cells using surface‐enhanced Raman scattering probes

Bálint, Š., Rao, S. K., Marro, M., Miškovský, P., & Petrov, D. V. (2011) · Journal of Raman Spectroscopy · doi:10.1002/jrs.2856 · Cited by 30

Single‐cell monitoring using fiberoptic nanosensors

Vo‐Dinh, T., & Zhang, Y. (2010) · Wiley Interdisciplinary Reviews Nanomedicine and Nanobiotechnology · doi:10.1002/wnan.112 · Cited by 30

SERS labels for quantitative assays: application to the quantification of gold nanoparticles uptaken by macrophage cells

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Prolonged irradiation of enhanced cyan fluorescent protein or Cerulean can invalidate Förster resonance energy transfer measurements

Hoffmann, B., Zimmer, T., Klöcker, N., Kelbauskas, L., König, K., Benndorf, K., & Biskup, C. U. (2008) · Journal of Biomedical Optics · doi:10.1117/1.2937829 · Cited by 28

Extending the fundamental imaging-depth limit of multi-photon microscopy by imaging with photo-activatable fluorophores

Chen, Z., Wei, L., Zhu, X., & Min, W. (2012) · Optics Express · doi:10.1364/oe.20.018525 · Cited by 28

Total Internal Reflection Fluorescence Flow Cytometry

Wang, J., Bao, N., Paris, L. L., Geahlen, R. L., & Lu, C. (2008) · Analytical Chemistry · doi:10.1021/ac801940w · Cited by 28

A Homogeneous Fluorescence Resonance Energy Transfer System for Monitoring the Activation of a Protein Switch in Real Time

Bill, A., Blockus, H., Stumpfe, D., Bajorath, J., Schmitz, A., & Famulok, M. (2011) · Journal of the American Chemical Society · doi:10.1021/ja202513s · Cited by 27

Standing wave total internal reflection fluorescence microscopy to measure the size of nanostructures in living cells

Gliko, O., Reddy, G. D., Anvari, B., Brownell, W. E., & Saggau, P. (2006) · Journal of Biomedical Optics · doi:10.1117/1.2372457 · Cited by 26

pH-Insensitive FRET Voltage Dyes

Maher, M. P., Wu, N., & Ao, H. (2007) · SLAS DISCOVERY · doi:10.1177/1087057107302113 · Cited by 26

Investigation of the stability of labelled nanoparticles for SE(R)RS measurements in cells

Sirimuthu, N. M. S., Syme, C. D., & Cooper, J. M. (2011) · Chemical Communications · doi:10.1039/c0cc05723a · Cited by 25

Gauging the Flexibility of Fluorescent Markers for the Interpretation of Fluorescence Resonance Energy Transfer

Rindermann, J. J., Akhtman, Y., Richardson, J., Brown, T., & Lagoudakis, P. G. (2010) · Journal of the American Chemical Society · doi:10.1021/ja105720j · Cited by 25

Real‐time three‐dimensional imaging of cell division by differential interference contrast microscopy

Tsunoda, M., Isailović, D., & Yeung, E. S. (2008) · Journal of Microscopy · doi:10.1111/j.1365-2818.2008.02091.x · Cited by 24

Ratiometric fluorescence imaging of dual bio-molecular events in single living cells using a new FRET pair mVenus/mKOκ-based biosensor and a single fluorescent protein biosensor

Su, T., Zhang, Z., & Luo, Q. (2011) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2011.10.034 · Cited by 24

Complex patterns of mitochondrial dynamics in human pancreatic cells revealed by fluorescent confocal imaging

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Second-Harmonic Generation Imaging of Membrane Potential with Photon Counting

Jiang, J., & Yuste, R. (2008) · Microscopy and Microanalysis · doi:10.1017/s1431927608080811 · Cited by 23

Molecular vibrational imaging of a human cell by multiplex coherent anti‐Stokes Raman scattering microspectroscopy using a supercontinuum light source

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ATP Changes the Fluorescence Lifetime of Cyan Fluorescent Protein via an Interaction with His148

Borst, J. W., Willemse, M. P., Slijkhuis, R. J. H., van der Krogt, G. N. M., Laptenok, S. P., Jalink, K., Wieringa, B., & Fransen, J. A. M. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013862 · Cited by 23

Dual-Modality Single Particle Orientation and Rotational Tracking of Intracellular Transport of Nanocargos

Sun, W., Gu, Y. H., Wang, G., & Fang, N. (2011) · Analytical Chemistry · doi:10.1021/ac202824v · Cited by 22

Fluorescence lifetime dynamics of enhanced green fluorescent protein in protein aggregates with expanded polyglutamine

Ghukasyan, V., Hsu, C.-C., Liu, C.-R., Kao, F.-J., & Cheng, T.-H. (2010) · Journal of Biomedical Optics · doi:10.1117/1.3290821 · Cited by 21

Electrical pulse - mediated enhanced delivery of silver nanoparticles into living suspension cells for surface enhanced Raman spectroscopy

Lin, J., Yu, Y., Li, B., Huang, H., Lin, S., Li, C., Su, Y., Feng, S., Chen, G., Li, Y., et al. (2012) · Laser Physics Letters · doi:10.1002/lapl.201110125 · Cited by 20

Fast XYT Imaging of Elementary Calcium Release Events in Muscle With Multifocal Multiphoton Microscopy and Wavelet Denoising and Detection

von Wegner, F., Both, M., Fink, R., & Friedrich, O. (2007) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.895471 · Cited by 20

Synthesis and multidisciplinary characterization of polyelectrolyte multilayer-coated nanogold with improved stability toward aggregation

Mandal, S., Bonifacio, A., Zanuttin, F., Sergo, V., & Krol, S. (2010) · Colloid & Polymer Science · doi:10.1007/s00396-010-2343-2 · Cited by 18

Inhibition Assay of Yeast Cell Walls by Plasmon Resonance Rayleigh Scattering and Surface-Enhanced Raman Scattering Imaging

Syamala, K. M., Abe, H., Fujita, Y., Tomimoto, K., Biju, V., Ishikawa, M., Ozaki, Y., & Itoh, T. (2012) · Langmuir · doi:10.1021/la3004245 · Cited by 18

Development of a novel set of Gateway‐compatible vectors for live imaging in insect cells

Maroniche, G. A., Mongelli, V. C., Alfonso, V., Llauger, G., Taboga, O. A., & del Vas, M. (2011) · Insect Molecular Biology · doi:10.1111/j.1365-2583.2011.01100.x · Cited by 17

Noninvasive Measurements of Integrin Microclustering under Altered Membrane Cholesterol Levels

Dibya, D., Arora, N., & Smith, E. A. (2010) · Biophysical Journal · doi:10.1016/j.bpj.2010.05.027 · Cited by 15

Imaging growth of neurites in conditioned hydrogel by coherent anti-Stokes Raman scattering microscopy

Conovaloff, A. W., Wang, H.-W., Cheng, J., & Panitch, A. (2009) · Organogenesis · doi:10.4161/org.5.4.10404 · Cited by 15

Superlocalization of Single Molecules and Nanoparticles in High-Fidelity Optical Imaging Microfluidic Devices

Luo, Y., Sun, W., Liu, C., Wang, G., & Fang, N. (2011) · Analytical Chemistry · doi:10.1021/ac201056z · Cited by 14

Temporary Increase of PPAR‐γ and Transient Expression of UCP‐1 in Stromal Vascular Fraction Isolated Human Adipocyte Derived Stem Cells During Adipogenesis

Jo, S. J., Choi, W. W., Lee, E. S., Lee, J. Y., Park, H., Moon, D. W., Eun, H. C., & Chung, J. H. (2011) · Lipids · doi:10.1007/s11745-011-3525-5 · Cited by 14

Identifying cytoplasmic proteins that affect receptor clustering using fluorescence resonance energy transfer and RNA interference

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VEGFR-2 targeted cellular delivery of doxorubicin by gold nanoparticles for potential antiangiogenic therapy

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Multi‐dimensional fluorescence microscopy of living cells

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General in Vivo Assay for the Study of Integrin Cell Membrane Receptor Microclustering

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Bidirectional Fluorescence Resonance Energy Transfer (FRET) in Mutated and Chemically Modified Yellow Fluorescent Protein (YFP)

Abraham, B. G., Tkachenko, N. V., Santala, V. P., Lemmetyinen, H. J., & Karp, M. T. (2011) · Bioconjugate Chemistry · doi:10.1021/bc100372u · Cited by 12

Creation of arrays of cell aggregates in defined patterns for developmental biology studies using dielectrophoresis

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Changes to lipid droplet configuration in mCMV-infected fibroblasts: live cell imaging with simultaneous CARS and two-photon fluorescence microscopy

Wong, C. S. Y., Robinson, I., Ochsenkühn, M. A., et al. (2011) · Biomedical Optics Express · doi:10.1364/boe.2.002504 · Cited by 11

SERS spectra of a single nasopharyngeal carcinoma cell based on intracellularly grown and passive uptake Au nanoparticles

Huang, H., Chen, W., Pan, J., et al. (2011) · doi:10.3233/spe-2011-0540 · Cited by 9

FRep: A Fluorescent Protein-Based Bioprobe for in Vivo Detection of Protein–DNA Interactions

Shahravan, S. H., Li, I. T. S., Truong, K., & Shin, J. A. (2011) · Analytical Chemistry · doi:10.1021/ac2024602 · Cited by 9

Second‐harmonic generation voltage imaging at subcellular resolution in rat hippocampal slices

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Nano-sensitizers for multi-modality optical diagnostic imaging and therapy of cancer

Olivo, M., Lucky, S. S., Ramaswamy, B., & Dendukuri, N. (2011) · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · doi:10.1117/12.890850 · Cited by 4

Searching the fluorescent protein color palette for new FRET pairs

Hazelwood, K. L., Ramko, E. B., Ozarowska, A. P., Olenych, S. G., Worthy, P. N., Guan, A., Murphy, C. S., & Davidson, M. W. (2008) · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · doi:10.1117/12.764560 · Cited by 3

Construction of fluorescence resonance energy transfer vectors and their application in study of structure and function of signal transducers and activators of transcription 1

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Highly emissive platinum(II) metallacages

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Single-nanowire spectrometers

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Facile Cucurbit[8]uril-Based Supramolecular Approach To Fabricate Tunable Luminescent Materials in Aqueous Solution

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Production of Monodisperse Gold Nanobipyramids with Number Percentages Approaching 100% and Evaluation of Their Plasmonic Properties

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Phosphine Oxides Manipulate Aggregation‐Induced Delayed Fluorescence for Time‐Resolved Bioimaging

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