The DOI matches its Crossref record.
Force Field Validation for Molecular Dynamics Simulations of IRMOF-1 and Other Isoreticular Zinc Carboxylate Coordination Polymers
Abstract
Molecular dynamics simulations were conducted to validate a hybrid force field for metal−organic framework-5 (IRMOF-1). In this force field, only nonbonded parameters are used to describe Zn−O interactions. The CVFF force field was used with slight modifications to describe the benzene dicarboxylate linker. The force field correctly predicts a wide range of structural properties of this MOF, including a negative thermal expansion of approximately 1% at 30 and 293 K, in agreement with both theory and experiment. Compressibility results and the associated elastic moduli are in also good agreement with published density functional theory calculations and nanoindentation experiments. The force field predicts a decrease in elastic moduli as temperature increases, which would greatly affect the mechanical properties of MOFs. Calculated vibrational frequencies for Zn−O modes agree with experiment, and a low-frequency mode representing a 180° rotation of the phenyl groups is seen. This rotation becomes more prevalent as the temperature is increased from 300 to 400 K, in agreement with NMR data. Simulations were also carried out with adsorbed guests, including ethanol, cyclohexane, and several chloromethanes. It is shown that the IRMOF-1 lattice parameter depends on the nature of the guest−framework interaction; strongly hydrophilic guests, such as ethanol, cause a decrease (−0.9%) in unit cell volume, while hydrophobic guests cause an increase (0.7−1.5%) in unit cell volume. The calculated free volumes in IRMOF-1 range from 53.5% to 56.0%, in good agreement with experiment. Finally, the activation energy for benzene self-diffusion calculated at low loadings is in good agreement with previous simulations and NMR results, but the magnitude of the diffusion constant is underestimated, most likely because of deficiencies in the CVFF portion of the force field. The results demonstrate, however, that employing a rigid force field results in much poorer agreement with experimental data. Additionally, a flexible force field approach is required when simulating framework stability because of physical changes or the presence of adsorbates. The use of a general-purpose force field for the organic components allows our approach to be extended to other Zn-based frameworks.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cited by
CO2 Capture and Separations Using MOFs: Computational and Experimental Studies
Yu, J., Xie, L.-H., Li, J.-R., Ma, Y., Seminario, J. M., & Balbuena, P. B. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00626 · Cited by 1,047
Tan, J. C., & Cheetham, A. K. (2011) · Chemical Society Reviews · doi:10.1039/c0cs00163e · Cited by 762
Han, S. S., Mendoza-Cortés, J. L., & Goddard III, W. A. (2009) · Chemical Society Reviews · doi:10.1039/b802430h · Cited by 594
Mapping of Functional Groups in Metal-Organic Frameworks
Kong, X., Deng, H., Yan, F., Kim, J., Swisher, J. A., Smit, B., Yaghi, O. M., & Reimer, J. A. (2013) · Science · doi:10.1126/science.1238339 · Cited by 498
Keskin, S., Liu, J., Rankin, R. B., Johnson, J. K., & Sholl, D. S. (2009) · Industrial & Engineering Chemistry Research · doi:10.1021/ie800666s · Cited by 310
Quantum-Chemical Characterization of the Properties and Reactivities of Metal–Organic Frameworks
Odoh, S. O., Cramer, C. J., Truhlar, D. G., & Gagliardi, L. (2015) · Chemical Reviews · doi:10.1021/cr500551h · Cited by 306
Force-Field Prediction of Materials Properties in Metal-Organic Frameworks
Boyd, P. G., Moosavi, S. M., Witman, M., & Smit, B. (2017) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.6b02532 · Cited by 304
Metadata
- Authors
- Greathouse, J. A., & Allendorf, M. D.
- Venue
- The Journal of Physical Chemistry C
- Publisher
- American Chemical Society (ACS)
- Published
- 2008-03-22
- Volume
- 112
- Issue
- 15
- Pages
- 5795-5802
- ISSN
- 1932-7447 (ISSN-L)
- 1932-7455
- OpenAlex
- W2062195075
- Cited by
- 164
- References
- 0
- FWCI
- 10.41
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.