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Free Energy of Ionic Hydration
Abstract
The hydration free energies of ions exhibit an approximately quadratic dependence on the ionic charge, as predicted by the Born model. We analyze this behavior using second-order perturbation theory. The average and the fluctuation of the electrostatic potential at charge sites appear as the first coefficients in a Taylor expansion of the free energy of charging. Combining the data from different charge states ( e . g ., charged and uncharged) allows calculation of free-energy profiles as a function of the ionic charge. The first two Taylor coefficients of the free-energy profiles can be computed accurately from equilibrium simulations, but they are affected by a strong system-size dependence. We apply corrections for these finite-size effects by using Ewald lattice summation and adding the self-interactions consistently. An analogous procedure is used for the reaction-field electrostatics. Results are presented for a model ion with methane-like Lennard-Jones parameters in simple point charge water. We find two very closely quadratic regimes with different parameters for positive and negative ions. We also studied the hydration free energy of potassium, calcium, fluoride, chloride, and bromide ions. We find negative ions to be solvated more strongly (as measured by hydration free energies) compared to positive ions of equal size, in agreement with experimental data. We ascribe this preference of negative ions to their strong interactions with water hydrogens, which can penetrate the ionic van der Waals shell without direct energetic penalty in the models used. In addition, we consistently find a positive electrostatic potential at the center of uncharged Lennard-Jones particles in water, which also favors negative ions. Regarding the effects of a finite system size, we show that even using only 16 water molecules it is possible to calculate accurately the hydration free energy of sodium, if self-interactions are considered.
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Cites
Equation of State Calculations by Fast Computing Machines
Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., & Teller, E. (1953) · The Journal of Chemical Physics · doi:10.1063/1.1699114 · Cited by 37,192
Computer Simulation of Liquids
Allen, M. P., & Tildesley, D. J. (2017) · doi:10.1093/oso/9780198803195.001.0001 · Cited by 20,945
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The Amber biomolecular simulation programs
Case, D. A., Cheatham, T. E., Darden, T., Gohlke, H., Luo, R., Merz, K. M., Onufriev, A., Simmerling, C., Wang, B., & Woods, R. J. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20290 · Cited by 9,535
Solvent Structure, Dynamics, and Ion Mobility in Aqueous Solutions at 25 °C
Koneshan, S., Rasaiah, J. C., Lynden-Bell, R. M., & Lee, S. H. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp980642x · Cited by 965
How Ions Affect the Structure of Water
Hribar, B., Southall, N. T., Vlachy, V., & Dill, K. A. (2002) · Journal of the American Chemical Society · doi:10.1021/ja026014h · Cited by 860
Biomolecular Modeling: Goals, Problems, Perspectives
van Gunsteren, W. F., Bakowies, D., Baron, R., Chandrasekhar, I., Christen, M., Daura, X., Gee, P., Geerke, D. P., Glättli, A., Hünenberger, P. H., et al. (2006) · Angewandte Chemie International Edition · doi:10.1002/anie.200502655 · Cited by 561
How Water’s Properties Are Encoded in Its Molecular Structure and Energies
Brini, E., Fennell, C. J., Fernandez-Serra, M., Hribar-Lee, B., Lukšič, M., & Dill, K. A. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00259 · Cited by 518
Halide, Ammonium, and Alkali Metal Ion Parameters for Modeling Aqueous Solutions
Jensen, K. P., & Jorgensen, W. L. (2006) · Journal of Chemical Theory and Computation · doi:10.1021/ct600252r · Cited by 451
Water in Cavity−Ligand Recognition
Baron, R., Setny, P., & McCammon, J. A. (2010) · Journal of the American Chemical Society · doi:10.1021/ja1050082 · Cited by 274
Rocklin, G. J., Mobley, D. L., Dill, K. A., & Hünenberger, P. H. (2013) · The Journal of Chemical Physics · doi:10.1063/1.4826261 · Cited by 234
On the structure and thermodynamics of solvated monoatomic ions using a hybrid solvation model
Topol, I. A., Tawa, G. J., Burt, S. K., & Rashin, A. A. (1999) · The Journal of Chemical Physics · doi:10.1063/1.480486 · Cited by 128
Binding of divalent cations to acetate: molecular simulations guided by Raman spectroscopy
Mendes de Oliveira, D., Zukowski, S. R., Palivec, V., Hénin, J., Martinez-Seara, H., Ben-Amotz, D., Jungwirth, P., & Duboué-Dijon, E. (2020) · Physical Chemistry Chemical Physics · doi:10.1039/d0cp02987d · Cited by 73
Thermodynamically dominant hydration structures of aqueous ions
Merchant, S., & Asthagiri, D. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3132709 · Cited by 51
Fluoride-dependent interruption of the transport cycle of a CLC Cl−/H+ antiporter
Lim, H.-H., Stockbridge, R. B., & Miller, C. (2013) · Nature Chemical Biology · doi:10.1038/nchembio.1336 · Cited by 43
Ketamine Metabolite (2 R,6 R)-Hydroxynorketamine Interacts with μ and κ Opioid Receptors
Joseph, T. T., Bu, W., Lin, W., Zoubak, L., Yeliseev, A., Liu, R., Eckenhoff, R. G., & Brannigan, G. (2021) · ACS Chemical Neuroscience · doi:10.1021/acschemneuro.0c00741 · Cited by 28
Metadata
- Authors
- Hummer, G., Pratt, L. R., & García, A. E.
- Venue
- The Journal of Physical Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 1996-01-01
- Volume
- 100
- Issue
- 4
- Pages
- 1206-1215
- ISSN
- 0022-3654 (ISSN-L)
- 1541-5740
- OpenAlex
- W1966867657
- Cited by
- 692
- References
- 2
- FWCI
- 16.80
- Type
- journal article
- Language
- en
- Open access
- closed
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