Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations

Paquin, Charlotte, Adams, Julian·1983·Nature

Cited by (239)

Items 101–200 of 239

  1. Microevolution in an Electronic Microcosm
    Gabriel Yedid, Graham Bell · 2001 · The American Naturalist
  2. Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment
    Sébastien Boyer, Lucas Hérissant, Gavin J. Sherlock · 2021 · PLoS Genetics
  3. Enological fermentation kinetics of an isogenic ploidy series derived from an industrial Saccharomyces cerevisiae strain
    Jean‐Michel Salmon · 1997 · Journal of Fermentation and Bioengineering
  4. Heterozygote Advantage Is a Common Outcome of Adaptation in Saccharomyces cerevisiae
    Diamantis Sellis, Daniel J. Kvitek, Barbara L. Dunn, Gavin Sherlock, Dmitri A. Petrov · 2016 · Genetics
  5. The adaptive response of a natural microbial population to carbon‐ and nitrogen‐limitation
    Matthew R. Goddard, Mark A. Bradford · 2003 · Ecology Letters
  6. Metabolome Analysis of Differential Responses of Diploid and Haploid Yeast to Ethanol Stress
    Ming‐Zhu Ding, Bing‐Zhi Li, Jing‐Sheng Cheng, Ying‐Jin Yuan · 2010 · OMICS A Journal of Integrative Biology
  7. The Number of Mutations Selected During Adaptation in a Laboratory Population of Saccharomyces cerevisiae
    Clifford Zeyl · 2005 · Genetics
  8. Microbial evolution in laboratory environments
    Julian Adams · 2004 · Research in Microbiology
  9. Experimental evolution in fungi: An untapped resource
    Kaitlin J. Fisher, Gregory I. Lang · 2016 · Fungal Genetics and Biology
  10. Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation
    María López‐Malo, Estéfani García‐Ríos, Bruno Melgar, Mónica Sánchez, Maitreya J. Dunham, José Manuel Guillamón · 2015 · BMC Genomics
  11. The population genetics of ploidy change in unicellular fungi
    Aleeza C. Gerstein, Nathaniel P. Sharp · 2021 · FEMS Microbiology Reviews
  12. Microevolution of intermediary metabolism: evolutionary genetics meets metabolic biochemistry
    Anthony J. Zera · 2010 · Journal of Experimental Biology
  13. THE LENGTH OF ADAPTIVE WALKS IS INSENSITIVE TO STARTING FITNESS IN ASPERGILLUS NIDULANS
    Danna R. Gifford, Sijmen E. Schoustra, Rees Kassen · 2011 · Evolution
  14. Haploid Mouse Embryonic Stem Cells: Rapid Genetic Screening and Germline Transmission
    Anton Wutz · 2014 · Annual Review of Cell and Developmental Biology
  15. Statistical questions in experimental evolution
    Michael M. Desai · 2013 · Journal of Statistical Mechanics Theory and Experiment
  16. Structure of evolving populations of Saccharomyces cerevisiae: adaptive changes are frequently associated with sequence alterations involving mobile elements belonging to the Ty family.
    J Adams, Paul W. Oeller · 1986 · Proceedings of the National Academy of Sciences
  17. Adaptive evolution of baker's yeast in a dough‐like environment enhances freeze and salinity tolerance
    Jaime Aguilera, Pasqual Andreu, Francisca Rández‐Gil, Jose Antonio Prieto · 2009 · Microbial Biotechnology
  18. Comparative evolution: latent potentials for anagenetic advance.
    G. Ledyard Stebbins, Daniel L. Hartl · 1988 · Proceedings of the National Academy of Sciences
  19. Transient responses and adaptation to steady state in a eukaryotic gene regulation system
    Erez Braun, Naama Brenner · 2004 · Physical Biology
  20. Inherited adaptation of genome‐rewired cells in response to a challenging environment
    Lior David, Elad Stolovicki, Efrat Haziz, Erez Braun · 2010 · HFSP journal
  21. Capturing the adaptive mutation in yeast
    Clifford Zeyl · 2004 · Research in Microbiology
  22. Differential paralog divergence modulates genome evolution across yeast species
    Monica R. Sanchez, Aaron W. Miller, Ivan Liachko, Anna B. Sunshine, Bryony Lynch, Mei Huang, Erica Alcantara, Christopher G. DeSevo, Dave A. Pai, Cheryl M. Tucker et al. · 2017 · PLoS Genetics
  23. Experimental studies of ploidy evolution in yeast
    Clifford Zeyl · 2004 · FEMS Microbiology Letters
  24. Appearance of morphological (colonial) mutants in glucose-limited, continuous flow cultures of Fusarium graminearum A3/5
    Marilyn G. Wiebe, Anthony P. J. Trinci, Bryan Cunliffe, Geoffrey D. Robson, Steven G. Oliver · 1991 · Mycological Research
  25. Optimal seasonal schedules and the relative dominance of heteromorphic and isomorphic life cycles in macroalgae
    Kazuhiro Bessho, Yoh Iwasa · 2010 · Journal of Theoretical Biology
  26. Ploidy Distribution of the Harmful Bloom Forming Macroalgae Ulva spp. in Narragansett Bay, Rhode Island, USA, Using Flow Cytometry Methods
    Elaine E. Potter, Carol Thornber, John-David Swanson, Malcolm McFarland · 2016 · PLoS ONE
  27. Polyploidy in urban environments
    Wendy E. Van Drunen, Marc T. J. Johnson · 2022 · Trends in Ecology & Evolution
  28. Classical Strain Improvement
    Nathan Crook, Hal S. Alper · 2012 · Wiley eBooks
  29. Development of morphological heterogeneity in glucose-limited chemostat cultures of Aspergillus oryzae
    Julie M. Withers, Marilyn G. Wiebe, Geoffrey D. Robson, Anthony P. J. Trinci · 1994 · Mycological Research
  30. Experimental Evolution and the Nature of Biodiversity
    Rees Kassen · 2024
  31. Multiple Genomic Changes Associated with Reorganization of Gene Regulation and Adaptation in Yeast
    Lior David, Yossef Ben-Harosh, Elad Stolovicki, Lindsay S. Moore, Michelle Nguyen, Raquel Kuehn, Jed Dean, Eugenio Mancera, Lars Michael Steinmetz, Erez Braun · 2013 · Molecular Biology and Evolution
  32. Ploidy Variation in Fungi: Polyploidy, Aneuploidy, and Genome Evolution
    Robert T. Todd, Anja Forche, Anna M. Selmecki · 2017 · ASM Press eBooks
  33. Two is better than one: A diploid genotype for neural networks
    Raffaele Calabretta, Riccardo Galbiati, Stefano Nolfi, Domenico Parisi · 1996 · Neural Processing Letters
  34. Periodic selection in longterm continuous-flow cultures of the filamentous fungus Fusarium graminearum
    Marilyn G. Wiebe, Geoffrey D. Robson, Bryan Cunliffe, Stephen G. Oliver, Anthony P. J. Trinci · 1993 · Journal of General Microbiology
  35. Current advances in haploid stem cells
    Tongtong Cui, Zhikun Li, Qi Zhou, Wei Li · 2019 · Protein & Cell
  36. Non-Genetic Engineering Approaches for Isolating and Generating Novel Yeasts for Industrial Applications
    Paul J. Chambers, J. R. Bellon, Simon A. Schmidt, Cristián Varela, Isak S. Pretorius · 2009 · Springer eBooks
  37. Microgeographic genetic variation in the haploid and diploid stages of the moss Polytrichum juniperinum Hedw.
    David J. Innes · 1990 · Heredity
  38. Steady-state and transient-state analyses of aerobic fermentation inSaccharomyces kluyveri
    Kasper Mà ̧ller, Christoffer Bro, Jure PiÅ¡kur, Jens Nielsen, Lisbeth Olsson A · 2002 · FEMS Yeast Research
  39. The Role of Deleterious and Beneficial Mutations in the Evolution of Ploidy Levels
    Sarah Perin Otto · 1994
  40. Identifying Targets of Selection in Laboratory Evolution Experiments
    Artemiza A. Martínez, Gregory I. Lang · 2023 · Journal of Molecular Evolution
  41. Evolution of haploid and diploid populations reveals common, strong, and variable pleiotropic effects in non-home environments
    Vivian K. Chen, Milo S. Johnson, Lucas Hérissant, Parris T. Humphrey, David C. Yuan, Yuping Li, Atish Agarwala, Samuel B Hoelscher, Dmitri A. Petrov, Michael M. Desai et al. · 2023 · eLife
  42. SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA
    Michael Feldgarden, Daniel M. Stoebel, Dustin Brisson, Daniel E. Dykhuizen · 2003 · Ecology
  43. The Use of Continuous Culture in Systems Biology Investigations
    Catherine L. Winder, Karin Lanthaler · 2011 · Methods in enzymology on CD-ROM/Methods in enzymology
  44. The Role of Cellular Plasticity in the Evolution of Regulatory Novelty
    Erez Braun, Lior David · 2011 · The MIT Press eBooks
  45. Differential sexual survival of Drosophila melanogaster on copper sulfate
    Michael A. Balinski, R.C. Woodruff · 2017 · Genetica
  46. Population Dynamics of Metastable Growth-Rate Phenotypes
    Lindsay S. Moore, Elad Stolovicki, Erez Braun · 2013 · PLoS ONE
  47. Evolution of Fusarium graminearum A3/5 grown in a series of glucose-limited chemostat cultures at a high dilution rate
    Marilyn G. Wiebe, Geoffrey D. Robson, Stephen G. Oliver, Anthony P. J. Trinci · 1995 · Mycological Research
  48. Structural stability of coexistence in evolutionary dynamics of cyclic competition
    Junpyo Park, Bongsoo Jang · 2020 · Applied Mathematics and Computation
  49. Multiplexing mutation rate assessment: determining pathogenicity of Msh2 variants in Saccharomyces cerevisiae
    Anja R. Ollodart, Chiann-Ling C Yeh, Aaron W Miller, Brian H. Shirts, Adam S Gordon, Maitreya J. Dunham · 2021 · Genetics
  50. Experimental Evolution in Yeast
    Maitreya J. Dunham · 2010 · Methods in enzymology on CD-ROM/Methods in enzymology
  51. Evolution of Fusarium graminearum A3/5 grown in a glucose-limited chemostat culture at a slow dilution rate
    Marilyn G. Wiebe, Geoffrey D. Robson, Stephen G. Oliver, Anthony P. J. Trinci · 1994 · Microbiology
  52. Life cycle strategies in free‐living unicellular eukaryotes: Diversity, evolution, and current molecular tools to unravel the private life of microorganisms
    Iris Rizos, Miguel José Frada, Lucie Bittner, Fabrice Not · 2024 · Journal of Eukaryotic Microbiology
  53. Ploidy and recombination proficiency shape the evolutionary adaptation to constitutive DNA replication stress
    Marco Fumasoni, Andrew W. Murray · 2021 · PLoS Genetics
  54. Directed evolution as an approach to increase fructose utilization in synthetic grape juice by wine yeast AWRI 796
    Michelle Elisabeth Walker, Tommaso Liccioli, Christopher R. L. Large, Yan Berkovich, Tom A Lang, Maitreya J. Dunham, Sean Formby, Vladimir Jiranek · 2022 · FEMS Yeast Research
  55. Chapter Four: Life Cycles in Major Lineages of Photosynthetic Eukaryotes, with a Special Reference to the Origin of Land Plants
    Hilary A. McManus, Yin‐Long Qiu · 2008 · Fieldiana Botany
  56. Evolution of Escherichia coli in different carbon environments for 2,000 generations
    Debika Choudhury, Supreet Saini · 2019 · Journal of Evolutionary Biology
  57. Heteromorphic and isomorphic alternations of generations in macroalgae as adaptations to a seasonal environment
    Kazuhiro Bessho, Yoh Iwasa · 2009 · Evolutionary ecology research
  58. A MODEL FOR THE EVOLUTION OF ASYMMETRICAL MALE HYBRID STERILITY AND ITS IMPLICATIONS FOR SPECIATION
    E. Zouros · 1986 · Evolution
  59. Systematic approach of polyploidy as an evolutionary genetic and genomic phenomenon in horticultural crops
    Abdul Basıt, Ki‐Byung Lim · 2024 · Plant Science
  60. Evolutionary engineering to improve Wickerhamomyces subpelliculosus and Kazachstania gamospora for baking
    Thandiwe Semumu, Amparo Gamero, Teun Boekhout, Nerve Zhou · 2022 · World Journal of Microbiology and Biotechnology
  61. Evolution: The genomics of adaptation in yeast
    Paul Sniegowski · 1999 · Current Biology
  62. Yeast Strain Optimization for Enological Applications
    David Ferreira, Jessica Noble · 2019 · IntechOpen eBooks
  63. The milestone of genetic screening: Mammalian haploid cells
    Shengyi Sun, Yiding Zhao, Ling Shuai · 2020 · Computational and Structural Biotechnology Journal
  64. Ploidy and Number of Chromosomes in the Alveolate Alga Chromera velia
    Jan Vazač, Zoltán Füssy, Irena Hladová, Sireesha Killi, Miroslav Obornı́k · 2017 · Protist
  65. Ploidy Identification by Flow Cytometry and Application of the Method to Characterize Seasonal Ploidy Variation of Wild Populations of the Red Alga Gracilariopsis lemaneiformis
    Xiaoqing Feng, Haihong Chen, Baoheng Xiao, Qiong Wu, Jingyu Zhang, Ni Zhang, Pingping Li, Lu Wang, Jingru Yin, Zhenghong Sui · 2022 · Marine Biotechnology
  66. The evolutionary advantage of haploid versus diploid microbes in nutrient-poor environments
    Kazuhiro Bessho, Yoh Iwasa, Troy Day · 2015 · Journal of Theoretical Biology
  67. Experimental Microbial Evolution of Extremophiles
    Paul Blum, Deepak Rudrappa, Raghuveer Singh, Samuel McCarthy, Benjamin J. Pavlik · 2016 · Grand challenges in biology and biotechnology
  68. Driven Apart: The Evolution of Ploidy Differences between the Sexes under Antagonistic Selection
    Simone Immler, Sarah Perin Otto · 2013 · The American Naturalist
  69. Phased chromosome-scale genome assembly of an asexual, allopolyploid root-knot nematode reveals complex subgenomic structure
    Michael R. Winter, Adam P. Taranto, Henok Zemene Yimer, Alison Coomer Blundell, Shahid Siddique, Valerie Moroz Williamson, David H. Lunt · 2024 · PLoS ONE
  70. Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas
    Quinten Bafort, Lucas Prost‐Boxoen, Eylem Aydoğdu, Antoine Van de Vloet, Griet Casteleyn, Yves Van de Peer, Olivier De Clerck · 2023 · Methods in molecular biology
  71. Evidence for control of nitrogen metabolism by a START-dependent mechanism in Saccharomyces cerevisiae
    B. Bryan, E. McGrew, Y. Lu, Michael Polymenis · 2004 · Zeitschrift für Induktive Abstammungs- und Vererbungslehre
  72. Evolution of Aspergillus niger and A. nidulans in glucose-limited chemostat cultures, as indicated by oscillations in the frequency of cycloheximide resistant and morphological mutants
    Richard J. Swift, Sally H. Craig, Marilyn G. Wiebe, Geoffrey D. Robson, Anthony P. J. Trinci · 2000 · Mycological Research
  73. Complex Genetic Changes in Strains of Saccharomyces cerevisiae Derived by Selection in the Laboratory
    Joshua T. Witten, Christina T.L. Chen, Barak A. Cohen · 2007 · Genetics
  74. Drivers of diversification in fungal pathogen populations
    Daniel Murante, Deborah A. Hogan · 2024 · PLoS Pathogens
  75. Meiosis as a mechanism for epigenetic reprogramming and cellular rejuvenation
    Frédéric Berger · 2024 · Development
  76. Leukemic Blasts with the Paroxysmal Nocturnal Hemoglobinuria Phenotype in Children with Acute Lymphoblastic Leukemia
    David J. Araten, Katie J. Sanders, Daniel Anscher, Leah B. Zamechek, Stephen P. Hunger, Sherif Ibrahim · 2012 · American Journal Of Pathology
  77. Evolutionary Genetics: A Piggyback Ride to Adaptation and Diversity
    Clifford Zeyl · 2007 · Current Biology
  78. A Short-Term Advantage for Syngamy in the Origin of Eukaryotic Sex: Effects of Cell Fusion on Cell Cycle Duration and Other Effects Related to the Duration of the Cell Cycle—Relationship between Cell Growth Curve and the Optimal Size of the Species, and Circadian Cell Cycle in Photosynthetic Unicellular Organisms
    Jose Maria Mancebo Quintana, Santiago Mancebo Quintana · 2012 · International Journal of Evolutionary Biology
  79. Development of microsatellites in sycamore maple (Acer pseudoplatanus L.) and their application in population genetics
    Madhav Pandey · 2005
  80. The Population Genetics of Ploidy Change in Fungi
    Aleeza C. Gerstein, Nathaniel P. Sharp · 2020 · Preprints.org
  81. Polyploidy and mutation in Arabidopsis
    Jonathan P. Spoelhof, Pamela S. Soltis, Pamela S. Soltis · 2021 · Evolution
  82. Gene flow contributes to genetic diversity of tetraploid populations of the North American plant genus Houstonia (Rubiaceae)
    Kelsey L. Glennon, Sheri A. Church · 2015 · Rhodora
  83. Temporal succession of community structure and biphase ratio in a natural population of Ulva spp. (Chlorophyta) attached to Pyropia rafts in the Yellow Sea, China
    Yu Du, Yuan Ao, Yuan He, Yi Yin, Yafeng Ma, Anxiang Yuan, Songdong Shen · 2019 · Botanica Marina
  84. Experimental Evolution and Resequencing Analysis of Yeast
    Célia Payen, Maitreya J. Dunham · 2015 · Methods in molecular biology
  85. The Study of Microbial Adaptation by Long-Term Experimental Evolution
    Vaughn S. Cooper · 2014 · ASM Press eBooks
  86. Population genetics: Adaptive evolution in the laboratory
    Brian Charlesworth · 1983 · Nature
  87. The population biology and evolutionary significance of Ty elements in Saccharomyces cerevisiae
    Cailin Moira Wilke, E. Maimer, J. Adams · 1993 · Contemporary issues in genetics and evolution
  88. Diploid Robots Adapting to Fast Changing Environments
    Raffaele Calabretta, Stefano Nolfi, Domenico Parisi, Riccardo Galbiati · 1998 · Perspectives in neural computing
  89. Chromosomal and mutagenic study of the marine macroalga, Gracilaria tenuistipitata
    Daleng Shen, Madeline C. S. Wu · 1995 · Journal of Applied Phycology
  90. Yeast Stability in the Brewing and Industrial Fermentation Ethanol Industries
    Chandra J. Panchal, Carl A. Bilinski, Inge Russell, Graham G. Stewart · 1986 · Critical Reviews in Biotechnology
  91. Divergent Selection
    Rees Kassen · 2024 · Oxford University Press eBooks
  92. Systems Biology as a Platform for Wine Yeast Strain Development
    Anthony R. Borneman, Paul J. Chambers, Isak S. Pretorius · 2008 · Springer eBooks
  93. Phenotypic Divergence Associated With Genomic Changes Suggests Physiological Adaptation in Obligate Asexuals
    Athina Karapli‐Petritsopoulou, Jasmin Josephine Heckelmann, Nicholas John Anderson, Sören Franzenburg, Dagmar Frisch · 2025 · Freshwater Biology
  94. The Evolution of Protein Material Costs
    Jason G. Bragg, Andreas Wagner · 2010
  95. Evolution of Yeast Respiro-Fermentative Lifestyle and the Underlying Mechanisms Behind Aerobic Fermentation
    Arne Hagman · 2013 · Lund University Publications (Lund University)
  96. Adaptive resistance of Saccharomyces cerevisiae to chronic treatment with mutagens being due to a dominant mutation
    Rudolf Fahrig, Inez Kaspers · 1990 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
  97. The effect of newly induced mutations on the fitness of genotypes and populations of yeast (Saccharomyces cerevisiae)
    Edeltraud Orthen, Peter Lange, K. Wöhrmann · 1984 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
  98. Haploid all the way: a new style of asexuality revealed in animals
    Véronique Perrot · 2002 · BioEssays
  99. Ploidy and the Sexual Yeast Genome in Theory, Nature, and Experiment
    Clifford Zeyl · 2014 · ASM Press eBooks
  100. Evolution and ecological aspects of parthenogenetic and sexual bagworm moths (Lepidoptera: Psychidae: Naryciinae)
    Veronica Chevasco · 2012 · Jyväskylä University Digital Archive (University of Jyväskylä)