Cited by 140

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

C-terminal binding domain of Rho GDP-dissociation inhibitor directs N-terminal inhibitory peptide to GTPases

Gosser, Yuying Q., Nomanbhoy, Tyzoon K., Aghazadeh, Behzad, Manor, Danny, Combs, Carolyn, Cerione, Richard A., Rosen, Michael K.·1997·Nature

Abstract

The Rho GDP-dissociation inhibitors (GDIs) negatively regulate Rho-family GTPases. The inhibitory activity of GDI derives both from an ability to bind the carboxy-terminal isoprene of Rho family members and extract them from membranes, and from inhibition of GTPase cycling between the GTP- and GDP-bound states. Here we demonstrate that these binding and inhibitory functions of rhoGDI can be attributed to two structurally distinct regions of the protein. A carboxy-terminal folded domain of relative molecular mass 16,000 (M[r] 16K) binds strongly to the Rho-family member Cdc42, yet has little effect on the rate of nucleotide dissociation from the GTPase. The solution structure of this domain shows a beta-sandwich motif with a narrow hydrophobic cleft that binds isoprenes, and an exposed surface that interacts with the protein portion of Cdc42. The amino-terminal region of rhoGDI is unstructured in the absence of target and contributes little to binding, but is necessary to inhibit nucleotide dissociation from Cdc42. These results lead to a model of rhoGDI function in which the carboxy-terminal binding domain targets the amino-terminal inhibitory region to GTPases, resulting in membrane extraction and inhibition of nucleotide cycling.

Overview

Integrity signals

Registry

Crossref · 10.1038/42961

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Show all 1 references

Research works printed but not linked: 29

  1. Ueda, T., Kikuchi, A., Ohga, N., Yamamoto, J. & Takai, Y. Purification and characterization from bovine brain cytosol of a novel regulatory protein inhibiting the dissociation of GDP from and the subsequent binding of GTP to rhoB p20, a ras p21-like GTP-binding protein. J. Biol. Chem. 265, 9373–9380 (1990). · DOI · Paper page
  2. Fukumoto, Y. et al. Molecular cloning and characterization of a novel type of regulatory protein (GDI) for the rho proteins, ras p21-like small GTP-binding proteins. Oncogene 5, 1321–1328 (1990).
  3. Isomura, M., Kikuchi, A., Ohga, N. & Takai, Y. Regulation of binding of RhoB p20 to membranes by its specific regulatory protein, GDP dissociation inhibitor. Oncogene 6, 119–124 (1991).
  4. Bokoch, G. M. & Der, C. J. Emerging concepts in the Ras superfamily of GTP-binding proteins. FASEB J. 7, 750–759 (1993). · DOI
  5. Hancock, J. F. & Hall, A. Anovel role for RhoGDI as an inhibitor of GAP proteins. EMBO J. 12, 1915–1921 (1993). · DOI
  6. Platko, J. V. et al. Asingle residue can modify target-binding affinity and activity of the functional domain of the Rho-subfamily GDP dissociation inhibitors. Proc. Natl Acad. Sci. USA 92, 2974–2978 (1995). · DOI
  7. Kay, L. E. Field gradient techniques in NMR spectroscopy. Curr. Opin. Struct. Biol. 5, 674–681 (1995). · DOI
  8. Schalk, I. et al. Structure and mutational analysis of Rab GDP-dissociation inhibitor. Nature 381, 42–48 (1996). · DOI
  9. Zalcman, G. et al. RhoGDI-3 is a new GDP dissociation inhibitor (GDI). J. Biol. Chem. 271, 30366–30374 (1996). · DOI
  10. Storch, J. Diversity of fatty acid-binding protein structure and function: studies with fluorescent ligands. Mol. Cell. Biochem. 123, 45–53 (1993). · DOI
  11. Hoffmann, R. W. Allylic 1,3-strain as a controlling factor in stereoselective transformations. Chem. Rev. 89, 1841–1860 (1989). · DOI
  12. Wiberg, K. B. & Murko, M. A. Rotational barriers. 2. Energies of alkane rotamers. An examination of gauche interactions. J. Am. Chem. Soc. 110, 8029–8038 (1988). · DOI
  13. Silvius, J. R. & l'Heureux, F. Fluorimetric evaluation of the affinities of isoprenylated peptides for lipid bilayers. Biochemistry 33, 3014–3022 (1994). · DOI
  14. Philips, M. R. et al. Carboxyl methylation of Ras-related proteins during signal transduction in neutrophils. Science 259, 977–980 (1993). · DOI
  15. Ghomashchi, R., Zhang, X., Liu, L. & Gelb, M. H. Binding of prenylated and polybasic peptides to membranes: affinities and intervesicle exchange. Biochemistry 34, 11910–11918 (1995). · DOI
  16. Na, S. et al. D4-GDI, a substate of CPP32, is proteolyzed during Fas-induced apoptosis. J. Biol. Chem. 271, 11209–11213 (1996). · DOI
  17. Danley, D. E., Chuang, T.-H. & Bokach, G. M. Defective Rho GTPase regulation by IL-1β-converting enzyme-mediated cleavage of D4 GDP dissociation inhibitor. J. Immunol. 157, 500–503 (1996). · DOI
  18. Nomanbhoy, T. K. & Cerione, R. A. Characterization of the interaction between RhoGDI and Cdc42Hs using fluorescence spectroscopy. J. Biol. Chem. 271, 10004–10009 (1996). · DOI
  19. Wu, J. W., Leonard, D. A., Cerione, R. A. & Manor, D. Interaction between Cdc42Hs and Rho-GDI is mediated through the Rho-insert region. J. Biol. Chem.(in the press).
  20. Clore, G. M. & Gronenborn, A. M. Multidimensional heteronuclear nuclear magnetic resonance of proteins. Methods Enzymol. 239, 349–363 (1994). · DOI
  21. Edison, A. S., Abildgaard, F., Westler, W. M., Mooberry, E. S. & Markley, J. L. Practical introduction to theory and implementation of multinuclear, multidimensional nuclear magnetic resonance experiments. Methods Enzymol. 239, 3–79 (1994). · DOI
  22. Neri, D., Szyperski, T., Otting, G., Senn, H. & Wuthrich, K. Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling. Biochemistry 28, 7510–7516 (1989). · DOI
  23. Brünger, A. T. X-PLOR manual(Yale Univ. Press, New Haven, CT, (1993)).
  24. Kuboniwa, H., Grzesiek, S., Delaglio, F. & Bax, A. Measurement of HN-Hα J couplings in calcium-free calmodulin using new 2D and 3D water-flip-back methods. J. Biomol. NMR 4, 871–878 (1994). · DOI
  25. Spera, S. & Bax, A. Empirical correlation between protein backbone conformation and Cα and Cβ 13C nuclear magnetic resonance chemical shifts. J. Am. Chem. Soc. 117, 5491–5495 (1991).
  26. Nilges, M., Clore, G. M. & Gronenborn, A. M. 1H-NMR stereospecific assignments by conformational data-base searches. Biopolymers 29, 813–822 (1990). · DOI
  27. Leonard, D. A., Evans, T., Hart, M., Cerione, R. A. & Manor, D. Investigation of the GTP-binding/GTPase cycle of Cdc42Hs using fluorescence spectroscopy. Biochemistry 33, 12323–12328 (1994). · DOI
  28. Carson, M. J. Ribbons 2.0. J. Appl. Crystallogr. 24, 958–961 (1991). · DOI
  29. Nichols, A., Sharp, K. A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struct. Funct. Genet. 11, 281–296 ((1990)). · DOI

Cited by

Metadata

Authors
Gosser, Y. Q., Nomanbhoy, T. K., Aghazadeh, B., Manor, D., Combs, C., Cerione, R. A., & Rosen, M. K.
Venue
Nature
Published
1997-06-19
Volume
387
Issue
6635
Pages
814-819
ISSN
  • 0028-0836
  • 1476-4687
Cited by
140
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review