Cited by 399Autophagy in Disease and TherapyParkinson's Disease Mechanisms and TreatmentsUbiquitin and proteasome pathways

AMBRA1 is able to induce mitophagy via LC3 binding, regardless of PARKIN and p62/SQSTM1

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Strappazzon, F, Nazio, F, Corrado, M, Cianfanelli, V, Romagnoli, A, Fimia, G M, Campello, S, Nardacci, R +3 more·2015·Cell Death & Differentiation

Abstract

Damaged mitochondria are eliminated by mitophagy, a selective form of autophagy whose dysfunction associates with neurodegenerative diseases. PINK1, PARKIN and p62/SQTMS1 have been shown to regulate mitophagy, leaving hitherto ill-defined the contribution by key players in 'general' autophagy. In basal conditions, a pool of AMBRA1 - an upstream autophagy regulator and a PARKIN interactor - is present at the mitochondria, where its pro-autophagic activity is inhibited by Bcl-2. Here we show that, upon mitophagy induction, AMBRA1 binds the autophagosome adapter LC3 through a LIR (LC3 interacting region) motif, this interaction being crucial for regulating both canonical PARKIN-dependent and -independent mitochondrial clearance. Moreover, forcing AMBRA1 localization to the outer mitochondrial membrane unleashes a massive PARKIN- and p62-independent but LC3-dependent mitophagy. These results highlight a novel role for AMBRA1 as a powerful mitophagy regulator, through both canonical or noncanonical pathways.

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  • AMBRA1 and ATG12 positively regulate mitophagy.

    “Although the role of ATG4A in mitophagy is unclear, AMBRA1 and ATG12 positively regulate mitophagy [56–58].”

    From miR-27a and miR-27b regulate autophagic clearance of damaged mitochondria by targeting PTEN-induced putative kinase 1 (PINK1) (2016) · cites this paper as [57]

    The Abstract (page unavailable) identifies AMBRA1 as a mitophagy regulator and reports that directing it to the outer mitochondrial membrane triggers mitophagy. Our copy does not establish that ATG12 positively regulates mitophagy; a search for ATG12 found no passage supporting that part of the claim. (LLM, conf=0.87)

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References 41 · Cited by 399

Research works printed but not linked: 28

  1. Cecconi F Levine B The role of autophagy in mammalian development: cell makeover rather than cell death Dev Cell 2008 3 344 357 18804433 PMC2688784
  2. Fimia GM Stoykova A Romagnoli A Giunta L Nardacci R Corazzari M Ambra1 regulates autophagy and development of the nervous system Nature 2007 447 1121 1125 17589504
  3. Strappazzon F Vietri-Rudan M Campello S Nazio F Florenzano F Fimia GM Mitochondrial BCL-2 inhibits AMBRA1-induced autophagy EMBO J 2011 30 1195 1208 21358617 PMC3094111
  4. Lippincott-Schwartz J Mitochondria supply membranes for autophagosome biogenesis during starvation Cell 2010 4 656 667 20478256 PMC3059894
  5. Sandoval H Thiagarajan P Dasgupta SK Schumacher A Prchal JT Chen M Essential role for Nix in autophagic maturation of erythroid cells Nature 2008 454 232 235 18454133 PMC2570948
  6. Vives-Bauza C Zhou C Huang Y Cui M de Vries RL Kim J PINK1-dependent recruitment of Parkin to mitochondria in mitophagy Proc Natl Acad Sci USA 2010 107 378 383 19966284 PMC2806779
  7. Lee JY Nagano Y Taylor JP Lim KL Yao TP Disease-causing mutations in parkin impair mitochondrial ubiquitination, aggregation, and HDAC6-dependent mitophagy J Cell Biol 2010 189 671 679 20457763 PMC2872903
  8. Andreux PA Houtkooper RH Auwerx J Pharmacological approaches to restore mitochondrial function Nat Rev Drug Discov 2013 6 465 483 23666487 PMC3896945
  9. Kundu M Lindsten T Yang CY Wu J Zhao F Zhang J Ulk1 plays a critical role in the autophagic clearance of mitochondria and ribosomes during reticulocyte maturation Blood 2008 112 1493 1502 18539900 PMC2515143
  10. Schweers RL Zhang J Randall MS Loyd MR Li W Dorsey FC NIX is required for programmed mitochondrial clearance during reticulocyte maturation Proc Natl Acad Sci USA 2007 104 19500 19505 18048346 PMC2148318
  11. Orvedahi A Sumpter R Xiao G Ng A Zou Z Tang Y Image-based genome-wide siRNA screen identifies selective autophagy factors Nature 2011 480 113 117 22020285 PMC3229641
  12. Johansen T Lamark T Selective autophagy mediated by autophagic adapter proteins Autophagy 2011 7 279 296 21189453 PMC3060413
  13. Cozzolino M Ferraro E Ferri A Rigamonti D Quondamatteo F Ding H Apoptosome inactivation rescues proneural and neural cells from neurodegeneration Cell Death Differ 2004 11 1179 1191 15257302
  14. Pistor S Chakraborty T Niebuhr K Domann E Wehland J The ActA protein of Listeria monocytogenes acts as a nucleator inducing reorganization of the actin cytoskeleton EMBO J 1994 13 758 763 8112291 PMC394872
  15. Blommaart EF Krause U Schellens JP Vreeling-Sindelarova H Meijer AJ The phosphatidylinositol 3-kinase inhibitors wortmannin and LY294002 inhibit autophagy in isolated rat hepatocytes Eur J Biochem 1997 243 240 246 9030745
  16. Seglen PO Gordon PB 3-Methyladenine: specific inhibitor of autophagic/lysosomal protein degradation in isolated rat hepatocytes Proc Natl Acad Sci USA 1982 79 1889 1892 6952238 PMC346086
  17. Twig G Hyde B Shirihai OS Mitochondrial fusion, fission and autophagy as a quality control axis: the bioenergetic view Biochim Biophys Acta 2008 9 1092 1097 18519024 PMC3809017
  18. Campanella M Parker N Tan CH Hall AM Duchen MR IF(1):setting the pace of the F(1)F(o)-ATP synthase Trends Biochem Sci 2009 7 343 350 19559621
  19. Itoh T Kanno E Uemura T Waguri S Fukuda M OATL1, a novel autophagosome-resident Rab33B-GAP, regulates autophagosomal maturation J Cell Biol 2011 192 839 853 21383079 PMC3051816
  20. Popovic D Akutsu M Novak I Harper JW Behrends C Dikic I Rab GTPase activating proteins in autophagy: regulation of endocytic and autophagy pathways by direct binding to human ATG8 modifiers Mol Cell Biol 2012 32 1733 1744 22354992 PMC3347240
  21. Nazio F Strappazzon F Antonioli M Bielli P Cianfanelli V Bordi M mTOR inhibits autophagy by controlling ULK1 ubiquitination, self-association and function via AMBRA1 and TRAF6 Nat Cell Biol 2013 4 406 416 23524951
  22. Jin J Arias EE Chen J Harper JW Walter JC A family of diverse Cul4-Ddb1 interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1 Mol Cell 2006 5 709 721 16949367
  23. Behrends C Sowa ME Gygi SP Wade Harper J Network organization of the human autophagy system Nature 2010 466 68 76 20562859 PMC2901998
  24. Okamoto K Kondo-Okamoto N Ohsumi Y Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy Dev Cell 2009 17 87 97 19619494
  25. Kanki T Wang K Cao Y Baba M Klionsky DJ Atg32 is a mitochondrial protein that confers selectivity during mitophagy Dev Cell 2009 17 98 109 19619495 PMC2746076
  26. Choubey V Cagalinec M Liiv J Safiulina D Hockey M Kuum M BECN1 is involved in the initiation of mitophagy. It facilitates PARK2 translocation to mitochondria Autophagy 2014 10 1092 1106 PMC4091171 24879156
  27. Grumati P Coletto L Sabatelli P Cescon M Angelin A Berteggia E Autophagy is defective in collagen VI muscular dystrophies, and its reactivation rescues myofiber degeneration Nat Med 2010 11 1313 1320 21037586
  28. Follenzi A Ailles LE Bakovic S Geuna M Naldini L Gene transfer by lentiviral vectors is limited by nuclear translocation and rescued by HIV-1 pol sequences Nat Genet 2000 25 217 222 10835641

Authors
Strappazzon, F., Nazio, F., Corrado, M., Cianfanelli, V, Romagnoli, A., Fimia, G. M., Campello, S., Nardacci, R., Piacentini, M., Campanella, M., & Cecconi, F.
Affiliations
  • University of Rome Tor Vergata (IT)
  • Fondazione Santa Lucia (IT)
  • Veneto Institute of Molecular Medicine (IT)
  • Istituto Nazionale per le Malattie Infettive Lazzaro Spallanzani (IT)
  • University of Salento (IT)
  • University of London (GB)
Corresponding author
Cecconi, F
Venue
Cell Death & Differentiation
Published
2014-09-12
Volume
22
Issue
3
Pages
419-432
ISSN
  • 1350-9047 (ISSN-L)
  • 1476-5403
OpenAlex
W1992947862
Cited by
399
References
41
Citations by year
2026: 21 · 2025: 23 · 2024: 42 · 2023: 34 · 2022: 40 · 2021: 53 · 2020: 41 · 2019: 31 · 2018: 23 · 2017: 33 · 2016: 26 · 2015: 27 · 2014: 4
FWCI
22.73
Type
journal article
Language
en
Update notices
erratum (2015-02-09)
Open access
Locations
  • Cell Death and Differentiation (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
  • RVC Research Online (Royal Veterinary College) (submittedVersion, cc-by)
  • Cineca Institutional Research Information System (Tor Vergata University) (submittedVersion, other-oa)
  • Cineca Institutional Research Information System (Tor Vergata University) (submittedVersion)
  • IRIS Research product catalog (Sapienza University of Rome) (submittedVersion, cc-by-nc-nd)
  • Iris (Roma Tre University) (submittedVersion)
  • AIRUS (submittedVersion)
  • Padua Research Archive (University of Padova) (submittedVersion, cc-by-nc-nd)
Funders
  • Fondazione Telethon (GGP10225, GTB12001)
  • Ministero della Salute
  • Lundbeckfonden (R165-2013-15982)
  • Associazione Italiana per la Ricerca sul Cancro (PRIN 2009, IG-2010)
  • Università degli Studi di Roma Tor Vergata
  • Royal Veterinary College
  • Biotechnology and Biological Sciences Research Council (BB/I013695/1)
Topics
  • Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
  • Health Sciences › Medicine › Neurology › Parkinson's Disease Mechanisms and Treatments
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
Keywords
AMBRA1, mitophagy, LC3-interacting region, Parkin, p62, autophagy regulation, Bcl-2, mitochondrial outer membrane, neurodegenerative diseases
MeSH terms
Sequestosome-1 Protein, Animals, Autophagy, Heat-Shock Proteins, HeLa Cells, Humans, Mice, Transgenic, Microtubule-Associated Proteins, Mitochondria, Transfection, Neurodegenerative Diseases, Ubiquitin-Protein Ligases, Adaptor Proteins, Signal Transducing, Mice, HEK293 Cells

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