Cited by 11Genomics and Rare DiseasesGenomics and Phylogenetic StudiesPrenatal Screening and Diagnostics

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Standard enrichment methods for targeted next-generation sequencing in high-repeat genomic regions

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Mueller, Patricia W., Lyons, Justine, Kerr, Gregory, Haase, Chad P., Isett, R. Benjamin·2013·Genetics in Medicine

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Crossref · 10.1038/gim.2013.119

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  • The findings support the concept that standard NGS-based methodologies are not yet suitable for the genetic testing of RCCX module genes within the homologous window, not only for CYP21A2 but also for TNXB exons 32-44.

    “Finally, our findings support the concept that standard NGS-based methodologies are not yet suitable for the genetic testing of RCCX module genes within the homologous window, not only for CYP21A2 but also for TNXB exons 32–44 [14,31,41].”

    From Pseudogene TNXA Variants May Interfere with the Genetic Testing of CAH-X (2023) · cites this paper as [41]

    The Abstract says standard NGS enrichment may fail to distinguish CYP21A2 from its highly homologous pseudogene, supporting the concern about CYP21A2 testing. It does not evaluate TNXB exons 32–44 or establish that standard NGS methods are unsuitable for those exons. (LLM, conf=0.87)

    Experimental — accuracy not yet measured

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References 3 · Cited by 11

Research works printed but not linked: 1

  1. Nimkarn S, New MI. 21-Hydroxylase-deficient congenital adrenal hyperplasia. Gene Reviews NCBI Bookshelf ID: NBK1171, PMID: 20301350 (Last revision: 2010).

Metadata

Authors
Mueller, P. W., Lyons, J., Kerr, G., Haase, C. P., & Isett, R. B.
Affiliations
  • Centers for Disease Control and Prevention (US)
  • Emory University (US)
Corresponding author
Mueller, Patricia W.
Venue
Genetics in Medicine
Publisher
Elsevier BV
Published
2013-11
Volume
15
Issue
11
Pages
910-911
ISSN
1098-3600 (ISSN-L)
OpenAlex
W2030513557
Cited by
11
References
3
Citations by year
2024: 2 · 2023: 1 · 2022: 1 · 2021: 1 · 2019: 1 · 2018: 1 · 2015: 1 · 2014: 3
FWCI
0.88
Type
journal article
Language
en
Open access
Locations
  • Genetics in Medicine (publishedVersion)
  • PubMed (publishedVersion)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Health Sciences › Medicine › Pediatrics, Perinatology and Child Health › Prenatal Screening and Diagnostics
Keywords
targeted next-generation sequencing, sample enrichment, newborn screening, recessive genetic diseases, screening test validation
MeSH terms
Child, Genes, Recessive, Humans, Infant, Newborn, Mutation, Genome, Human, Sequence Analysis, DNA, Genomics, DNA Repeat Expansion, High-Throughput Nucleotide Sequencing

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