The DOI matches its Crossref record; 51 of the 51 references it cites were found in a registry or an index.
Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils
Open accessAbstract
Microbes are transported in hydrological networks through many environments, but the nature and dynamics of underlying microbial metacommunities and the impact of downslope inoculation on patterns of microbial diversity across landscapes are unknown. Pyrosequencing of small subunit ribosomal RNA gene hypervariable regions to characterize microbial communities along a hydrological continuum in arctic tundra showed a pattern of decreasing diversity downslope, with highest species richness in soil waters and headwater streams, and lowest richness in lake water. In a downstream lake, 58% and 43% of the bacterial and archaeal taxa, respectively, were also detected in diverse upslope communities, including most of the numerically dominant lake taxa. In contrast, only 18% of microbial eukaryotic taxa in the lake were detected upslope. We suggest that patterns of diversity in surface waters are structured by initial inoculation from microbial reservoirs in soils followed by a species-sorting process during downslope dispersal of both common and rare microbial taxa. Our results suggest that, unlike for metazoans, a substantial portion of bacterial and archaeal diversity in surface freshwaters may originate in complex soil environments.
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Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549
Non‐parametric multivariate analyses of changes in community structure
CLARKE, K. R. (1993) · Australian Journal of Ecology · doi:10.1111/j.1442-9993.1993.tb00438.x · Cited by 14,128
Ecological Diversity and Its Measurement
Magurran, A. E. (1988) · Springer eBooks · doi:10.1007/978-94-015-7358-0 · Cited by 10,879
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., & Glockner, F. O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm864 · Cited by 6,668
The metacommunity concept: a framework for multi‐scale community ecology
Leibold, M. A., Holyoak, M., Mouquet, N., Amarasekare, P., Chase, J. M., Hoopes, M. F., Holt, R. D., Shurin, J. B., Law, R., Tilman, D., et al. (2004) · Ecology Letters · doi:10.1111/j.1461-0248.2004.00608.x · Cited by 5,391
Microbial diversity in the deep sea and the underexplored “rare biosphere”
Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. M., Huse, S. M., Neal, P. R., Arrieta, J. M., & Herndl, G. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605127103 · Cited by 3,701
Microbial biogeography: putting microorganisms on the map
Martiny, J. B. H., Bohannan, B. J. M., Brown, J. H., Colwell, R. K., Fuhrman, J. A., Green, J. L., Horner-Devine, M. C., Kane, M., Krumins, J. A., Kuske, C. R., et al. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1341 · Cited by 3,022
Quantifying the roles of immigration and chance in shaping prokaryote community structure
Sloan, W. T., Lunn, M., Woodcock, S., Head, I. M., Nee, S., & Curtis, T. P. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00956.x · Cited by 1,887
Pyrosequencing enumerates and contrasts soil microbial diversity
Roesch, L. F. W., Fulthorpe, R. R., Riva, A., Casella, G., Hadwin, A. K. M., Kent, A. D., Daroub, S. H., Camargo, F. A. O., Farmerie, W. G., & Triplett, E. W. (2007) · The ISME Journal · doi:10.1038/ismej.2007.53 · Cited by 1,852
Global patterns in bacterial diversity
Lozupone, C. A., & Knight, R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611525104 · Cited by 1,825
Cited by
The ecology and biogeochemistry of stream biofilms
Battin, T. J., Besemer, K., Bengtsson, M. M., Romani, A. M., & Packmann, A. I. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.15 · Cited by 1,163
Niño-García, J. P., Ruiz-González, C., & del Giorgio, P. A. (2016) · The ISME Journal · doi:10.1038/ismej.2015.226 · Cited by 257
Metadata
- Authors
- Crump, B. C., Amaral-Zettler, L. A., & Kling, G. W.
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-03-01
- Volume
- 6
- Issue
- 9
- Pages
- 1629-1639
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- OpenAlex
- W2016904876
- Cited by
- 342
- References
- 51
- FWCI
- 14.75
- Type
- journal article
- Language
- en
- Open access
- hybrid
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
