Ninety-nine de novo assembled genomes from the moose ( Alces alces ) rumen microbiome provide new insights into microbial plant biomass degradation

Svartström, Olov, Alneberg, Johannes, Terrapon, Nicolas, Lombard, Vincent, de Bruijn, Ino, Malmsten, Jonas, Dalin, Ann-Marie, EL Muller, Emilie, Shah, Pranjul, Wilmes, Paul, Henrissat, Bernard, Aspeborg, Henrik, Andersson, Anders F·2017·The ISME Journal
DOI 10.1038/ismej.2017.108

Cited by (188)

Items 101–188 of 188

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  9. Rumen Metaproteomics Highlight the Unique Contributions of Microbe-Derived Extracellular and Intracellular Proteins for In Vitro Ruminal Fermentation
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  11. “Get the best out of what comes in” – adaptation of the microbiota of chamois (Rupicapra rupicapra) to seasonal forage availability in the Bavarian Alps
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  12. Characterization of a novel multifunctional glycoside hydrolase family in the metagenome-assembled genomes of horse gut
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  13. Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2021 · Research Square
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    A. Sahoo · 2023 · Journal of Camel Practice and Research
  15. Inhibition of acetogenesis and methanogenesis by inoculating successively ammonia nitrogen-inhibited anaerobic fermentation residues for rapid-efficient propionate accumulation
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  16. Thermophilic Microbial Inoculant Promotes Lignocellulose Degradation During Green Waste Composting
    Dan Hao, Xiaohang Yu, Xiangyang Sun, Dongdong Cheng, Hao Ding, Yige Wang, Yalin Li, Zhewen Geng, Guijun Xu · 2026 · Microorganisms
  17. Reliable and Scalable Identification and Prioritization of Putative Cellulolytic Anaerobes With Large Genome Data
    Yubo Wang, Liguan Li, Yu Xia, Tong Zhang · 2022 · Frontiers in Bioinformatics
  18. Influence of the artificial sodium saccharin sweetener Sucram ® on the microbial community composition in the rumen content and attached to the rumen epithelium in dairy cattle: A pilot study
    Lucas R. Koester, Chiron J Anderson, Bienvenido W. Tibbs‐Cortes, Mark Lyte, Stephan Schmitz‐Esser · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  19. Enhancing Photosynthetic Carbon Transport in Rice Plant Optimizes Rhizosphere Bacterial Community in Saline Soil
    Weiwei Zhang, Shunying Yang, Tianqi Wei, Yanhua Su · 2024 · International Journal of Molecular Sciences
  20. Correlation of hindgut microbiome and fermentation properties with a history of gas and/or impaction colic in Japanese draft horses
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  21. In Vitro Evaluation of the Antimicrobial Effect of Betulin on the Rumen Microbiome
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  22. Rumen microbiome biogeography and ventral epithelial architecture in three ruminant species
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  23. A comprehensive ruminant microbial catalog (CRMC) reveals convergent selection for key vitamin-synthesizing pathways and genes across ruminants and human
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  24. The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi
    Xialian Bu, Weishan Zhao, Zhongyang Li, Hongwei Ma, Yu-shun Chen, Wenxiang Li, Hong Zou, Ming Li, Guitang Wang · 2023 · BMC Genomics
  25. Gut diazotrophs in lagomorphs are associated with season but not altitude and host phylogeny
    Sijie Wang, Ming Su, Xueqian Hu, Xiaochen Wang, Qian Han, Qiaoling Yu, Petr Hědenec, Huan Li · 2023 · FEMS Microbiology Letters
  26. Bioinformatic Methods in Metagenomics
    Johannes Alneberg · 2018 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
  27. Copresent microbiome and short-chain fatty acids profiles of plant biomass utilization in rumen simulation technique system
    Tao Shi, Tingting Zhang, Xihong Wang, Xiangnan Wang, Weijun Shen, Xi Guo, Yuqin Liu, Zongjun Li, Yu Jiang · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  28. Characterization of the dairy cattle rumen microbial communities in response to long term supplementation of a sodium-saccharin based sweetener during normal physiological and heat stress conditions
    Lucas R. Koester · 2022
  29. Impact of probiotics on commensal and pathogenic swine intestinal microbes
    Weilan Wang · 2019 · ERA: Education and Research Archive (University of Alberta)
  30. Fibre degradation by pig microbiota
    Cheng Long · 2020 · Research Publications (Maastricht University)
  31. From Microbes to Management
    Olivia K. Rodríguez · 2021
  32. Peer Review #3 of "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites (v0.2)"
    2020 · PeerJ
  33. Peer Review #3 of "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites (v0.1)"
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  34. Peer Review #2 of "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites (v0.1)"
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  35. Peer Review #1 of "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites (v0.1)"
    2020 · PeerJ
  36. Transient Colonising Microbes Promote Gut Dysbiosis and Disease Pathology
    Sunjae Lee, Victoria Meslier, Gholamreza Bidkhori, Lucie Etienne‐Mesmin, Junseok Park, Florian Plaza Oñate, Haizhuang Cai, Emmanuelle Le Chatelier, Nicolas Pons, Doheon Lee et al. · 2022 · SSRN Electronic Journal
  37. Additional file 5 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Qian Jiang, Limei Lin, Fei Xie, Jin, Wei, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Junhua Liu, Shengyong Mao · 2022 · Figshare
  38. Additional file 4 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  39. Additional file 8 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  40. Additional file 3 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  41. Additional file 14 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  42. Additional file 4 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  43. Additional file 3 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Qian Jiang, Limei Lin, Fei Xie, Jin, Wei, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Junhua Liu, Shengyong Mao · 2022 · Figshare
  44. Additional file 7 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Zhang, Jie, Changlong Shu · 2022 · Figshare
  45. Additional file 8 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  46. Additional file 7 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  47. Additional file 11 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  48. Additional file 5 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  49. Additional file 13 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  50. Additional file 9 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  51. Additional file 2 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Qian Jiang, Limei Lin, Fei Xie, Jin, Wei, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Junhua Liu, Shengyong Mao · 2022 · Figshare
  52. Additional file 1 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Zhang, Jie, Changlong Shu · 2022 · Figshare
  53. Additional file 6 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  54. Additional file 5 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Zhang, Jie, Changlong Shu · 2022 · Figshare
  55. Additional file 2 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Zhang, Jie, Changlong Shu · 2022 · Figshare
  56. Additional file 12 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  57. Additional file 6 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Tao, Ye, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan et al. · 2021 · Figshare
  58. Additional file 3 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu · 2022 · Figshare
  59. Additional file 4 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Qian Jiang, Limei Lin, Fei Xie, Jin, Wei, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Junhua Liu, Shengyong Mao · 2022 · Figshare
  60. Characterization of the rumen epithelial microbiota of cattle and other ruminants through bioinformatics approaches: Discovering core microbiota, gene expression during sub-acute ruminal acidosis, and functional capabilities of novel metagenome assembled genomes
    Chiron J Anderson · 2024
  61. Analysis of the influence of intestinal microorganisms on fatty acids in grazing mutton
    Jingwen Zhang, Qing QIN, MingXi LAN, Tian Qin, Zhixin Wang, HaiJun ZHANG, Zhihong Liu · 2025 · Scientia Sinica Vitae
  62. Additional file 2 of The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi
    Bu, Xia-lian, Weishan Zhao, Li, Zhong-yang, Ma, Hong-wei, Chen, Yu-shun, Li, Wen-xiang, Hong Zou, Li, Ming, GH Wang · 2024 · Figshare
  63. Additional file 10 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line
    Wang, Kui, Peiwen Gao, Geng, Lili, Chunqin Liu, Zhang, Jie, 束长龙 · 2022 · Figshare
  64. Additional file 5 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  65. Additional file 1 of A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
    Wu, Yingjian, Gao, Na, Sun, Chuqing, Feng, Tong, Liu, Qingyou, Chen, Wei-Hua · 2024 · Figshare
  66. Additional file 1 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Qian Jiang, Lin, Limei, Xie, Fei, Wei Jin, Zhu, Weiyun, Wang, Min, Qiu, Qiang, Li, Zhipeng, Junhua Liu, Mao, Shengyong · 2022 · Figshare
  67. Additional file 2 of A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
    Wu, Yingjian, Gao, Na, Sun, Chuqing, Tong Feng, Liu, Qingyou, Chen, Wei-Hua · 2024 · Figshare
  68. Additional file 1 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  69. Additional file 3 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  70. Additional file 2 of Structural and functional analysis of the active cow rumen’s microbial community provides a catalogue of genes and microbes participating in the deconstruction of cardoon biomass
    Andrea Firrincieli, Andrea Minuti, Martina Cappelletti, Ferilli, Marco, Ajmone-Marsan, Paolo, Paolo Bani, Maurizio Petruccioli, Antoine L. Harfouche · 2024 · Figshare
  71. Additional file 1 of The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi
    Bu, Xia-lian, Weishan Zhao, Li, Zhong-yang, Ma, Hong-wei, Chen, Yu-shun, Li, Wen-xiang, Hong Zou, Ming Li, GH Wang · 2023 · Figshare
  72. Additional file 1 of Production, purification, characterization and application of two novel endoglucanases from buffalo rumen metagenome
    Zhenxiang Meng, Yang, Chengjian, Leng, Jing, Zhu, Weiyun, Cheng, Yanfen · 2024 · Figshare
  73. Additional file 4 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  74. Additional file 2 of Production, purification, characterization and application of two novel endoglucanases from buffalo rumen metagenome
    Zhenxiang Meng, Yang, Chengjian, Leng, Jing, Zhu, Weiyun, Cheng, Yanfen · 2024 · Figshare
  75. Additional file 6 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  76. Additional file 2 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  77. Additional file 2 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
    Xie, Fei, Wei Jin, Si, Huazhe, Yuan, Yuan, Tao, Ye, Liu, Junhua, Wang, Xiaoxu, Yang, Chengjian, Li, Qiushuang, Xiaoting Yan et al. · 2021 · Figshare
  78. Additional file 8 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  79. Additional file 7 of Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
    Jennifer R Weinert-Nelson, Amy S. Biddle, Carey A. Williams · 2022 · Figshare
  80. Additional file 1 of Microbiota-host crosstalk in the newborn and adult rumen at single-cell resolution
    Wu, Jia-Jin, Senlin Zhu, Tang, Yi-Fan, Gu, Fengfei, Jianxin Liu, Huizeng Sun · 2023 · Figshare
  81. Additional file 1 of Structural and functional analysis of the active cow rumen’s microbial community provides a catalogue of genes and microbes participating in the deconstruction of cardoon biomass
    Andrea Firrincieli, Andrea Minuti, Martina Cappelletti, Ferilli, Marco, Ajmone-Marsan, Paolo, Paolo Bani, Maurizio Petruccioli, Antoine L. Harfouche · 2024 · Figshare
  82. Integrating multi-omics to characterize the dynamics of rumen microorganisms and metabolites in Angus cattle at different growth stages
    Xue Lin, Wei Zhao, Chuanchuan Wang, Yun Ma, Jinli Tian, Lijuan Yang, Lina Ma, Qiufei Jiang, Yafei Chen, Xiaohua Tian et al. · 2026 · Research in Veterinary Science
  83. Impact of captivity on gut microbiota, tracheal microbiota and metabolic pathways in wild chipmunks
    Juntao Liu, Jiayi Chu, Ye Tian, Qing Liu, Jiarun Cui, Dawei Zhang, Huimei Yu · 2026 · BMC Microbiology
  84. A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes
    Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang · 2026 · Animal Research and One Health
  85. Discovery of new glycoside-phosphorylases for oligosaccharide synthesis
    Ao Li · 2020 · theses.fr (ABES)
  86. Production de synthons par des consortia microbiens à partir de paille de blé : approches macrocinétique, enzymatique et métaprotéomique
    Adèle Lazuka · 2018 · theses.fr (ABES)
  87. Lignin degradation by microbial consortia from termite : Enrichment and characterization of bacterial communities by (bio-)chemical and metagenomics approaches
    Louison Dumond · 2021 · theses.fr (ABES)
  88. Host breed and geography shape the antiviral defense landscape of the bovine rumen microbiome
    Camila Aparecida Faleiros, Osiel Silva Gonçalves, Alanne T. Nunes, Crislaine S Pires, Mirele Poleti, Heidge Fukumasu · 2026 · ISME Communications