Dnmt3a regulates T-cell development and suppresses T-ALL transformation
Open accessAbstract
T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive hematopoietic neoplasm resulting from the malignant transformation of T-cell progenitors, and comprises ~15% and 25% of pediatric and adult ALL cases, respectively. It is well-established that activating NOTCH1 mutations are the major genetic lesions driving T-ALL in most patients, but efforts to develop targeted therapies against this pathway have produced limited success in decreasing leukemic burden and come with significant clinical side effects. A finer detailed understanding of the genetic and molecular mechanisms underlying T-ALL is required identify patients at increased risk for treatment failure and the development of precision medicine strategies. Generation of genetic models that more accurately reflect the normal developmental history of T-ALL are necessary to identify new avenues for treatment. The DNA methyltransferase enzyme DNMT3A is also recurrently mutated in T-ALL patients, and we show here that inactivation of Dnmt3a combined with Notch1 gain-of-function leads to an aggressive T-ALL in mouse models. Moreover, conditional inactivation of Dnmt3a in mouse hematopoietic cells leads to an accumulation of immature progenitors in the thymus, which are less apoptotic. These data demonstrate that Dnmt3a is required for normal T-cell development, and acts as a T-ALL tumor suppressor.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Reduced Nr4a1 in Dnmt3a-mutant hematopoietic progenitors leads to suppression of apoptosis.
“leading to suppression of apoptosis (Kramer et al., 2017).”
From Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling (2021) · cites this paper as Kramer et al., 2017
The Discussion says Dnmt3aKO-derived DN2 thymic progenitors have reduced apoptosis partially due to Nr4a1 downregulation. The claim omits “partially” and extends this finding from DN2 thymic progenitors to Dnmt3a-mutant hematopoietic progenitors generally. (LLM, conf=0.86)
Experimental — accuracy not yet measuredNr4a1 is reduced in Dnmt3a-mutant hematopoietic progenitors.
“Nr4a1 has been reported to be reduced in Dnmt3a-mutant hematopoietic progenitors”
From Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling (2021) · cites this paper as Kramer et al., 2017
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The genetic basis of early T-cell precursor acute lymphoblastic leukaemia
Zhang, J., Ding, L., Holmfeldt, L., Wu, G., Heatley, S. L., Payne-Turner, D., Easton, J., Chen, X., Wang, J., Rusch, M., et al. (2012) · Nature · doi:10.1038/nature10725 · Cited by 1,596 · cited 1× · see citing works
“ETP-ALL comprises up to 15% of adult T-ALL cases, and is associated with a high risk of treatment failure (23, 24).”
BackgroundRussler-Germain, D. A., Spencer, D. H., Young, M. A., Lamprecht, T. L., Miller, C. A., Fulton, R., Meyer, M. R., Erdmann-Gilmore, P., Townsend, R. R., Wilson, R. K., et al. (2014) · Cancer Cell · doi:10.1016/j.ccr.2014.02.010 · Cited by 452 · see citing works
Celik, H., Mallaney, C., Kothari, A., Ostrander, E. L., Eultgen, E., Martens, A., Miller, C. A., Hundal, J., Klco, J. M., & Challen, G. A. (2015) · Blood · doi:10.1182/blood-2014-08-594564 · Cited by 95 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 38
- [1]Aifantis I Raetz E Buonamici S Molecular pathogenesis of T-cell leukaemia and lymphoma Nat Rev Immunol 2008 8 380 90 18421304
- [2]Radtke F Wilson A Stark G Bauer M van Meerwijk J MacDonald HR Deficient T cell fate specification in mice with an induced inactivation of Notch1 Immunity 1999 10 547 58 10367900
- [3]Kopan R Ilagan MX The canonical Notch signaling pathway: unfolding the activation mechanism Cell 2009 137 216 33 19379690 PMC2827930
- [4]Huang YH Li D Winoto A Robey EA Distinct transcriptional programs in thymocytes responding to T cell receptor, Notch, and positive selection signals Proc Natl Acad Sci USA 2004 101 4936 41 15044701 PMC387352
- [5]Jarriault S Brou C Logeat F Schroeter EH Kopan R Israel A Signalling downstream of activated mammalian Notch Nature 1995 377 355 8 7566092
- [6]Reizis B Leder P Direct induction of T lymphocyte-specific gene expression by the mammalian Notch signaling pathway Genes Dev 2002 16 295 300 11825871 PMC155334
- [7]Weng AP Ferrando AA Lee W Morris JPt Silverman LB Sanchez-Irizarry C Activating mutations of NOTCH1 in human T cell acute lymphoblastic leukemia Science 2004 306 269 71 15472075
- [8]Pear WS Aster JC Scott ML Hasserjian RP Soffer B Sklar J Exclusive development of T cell neoplasms in mice transplanted with bone marrow expressing activated Notch alleles J Exp Med 1996 183 2283 91 8642337 PMC2192581
- [9]Ley TJ Ding L Walter MJ McLellan MD Lamprecht T Larson DE DNMT3A mutations in acute myeloid leukemia N Engl J Med 2010 363 2424 33 21067377 PMC3201818
- [10]Cancer Genome Atlas Research Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia N Engl J Med 2013 368 2059 74 23634996 PMC3767041
- [11]Simon C Chagraoui J Krosl J Gendron P Wilhelm B Lemieux S A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia Genes Dev 2012 26 651 6 22431509 PMC3323876
- [12]Aref S El Menshawy N El-Ghonemy MS Zeid TA El-Baiomy MA Clinicopathologic Effect of DNMT3A Mutation in Adult T-Cell Acute Lymphoblastic Leukemia Clinical lymphoma, myeloma & leukemia 2016 16 43 8 26711182
- [13]Couronne L Bastard C Bernard OA TET2 and DNMT3A mutations in human T-cell lymphoma N Engl J Med 2012 366 95 6 22216861
- [14]Grossmann V Haferlach C Weissmann S Roller A Schindela S Poetzinger F The molecular profile of adult T-cell acute lymphoblastic leukemia: mutations in RUNX1 and DNMT3A are associated with poor prognosis in T-ALL Genes Chromosomes Cancer 2013 52 410 22 23341344
- [15]Van Vlierberghe P Ambesi-Impiombato A Perez-Garcia A Haydu JE Rigo I Hadler M ETV6 mutations in early immature human T cell leukemias J Exp Med 2011 208 2571 9 22162831 PMC3244026
- [16]Challen GA Sun D Jeong M Luo M Jelinek J Berg JS Dnmt3a is essential for hematopoietic stem cell differentiation Nat Genet 2012 44 23 31 PMC3637952 22138693
- [17]Challen GA Goodell MA Runx1 isoforms show differential expression patterns during hematopoietic development but have similar functional effects in adult hematopoietic stem cells Exp Hematol 2010 38 403 16 20206228 PMC2854264
- [18]Chiang MY Xu L Shestova O Histen G L’Heureux S Romany C Leukemia-associated NOTCH1 alleles are weak tumor initiators but accelerate K-ras-initiated leukemia J Clin Invest 2008 118 3181 94 18677410 PMC2491459
- [19]Challen GA Sun D Mayle A Jeong M Luo M Rodriguez B Dnmt3a and Dnmt3b Have Overlapping and Distinct Functions in Hematopoietic Stem Cells Cell Stem Cell 2014 15 350 364 25130491 PMC4163922
- [20]Akalin A Garrett-Bakelman FE Kormaksson M Busuttil J Zhang L Khrebtukova I Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia PLoS Genet 2012 8 e1002781 22737091 PMC3380828
- [21]Mayle A Yang L Rodriguez B Zhou T Chang E Curry CV Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation Blood 2015 125 629 38 25416277 PMC4304108
- [22]Yang L Rodriguez B Mayle A Park HJ Lin X Luo M DNMT3A Loss Drives Enhancer Hypomethylation in FLT3-ITD-Associated Leukemias Cancer Cell 2016 29 922 34 27300438 PMC4908977
- [24]Coustan-Smith E Mullighan CG Onciu M Behm FG Raimondi SC Pei D Early T-cell precursor leukaemia: a subtype of very high-risk acute lymphoblastic leukaemia The lancet oncology 2009 10 147 56 19147408 PMC2840241
- [25]Neumann M Heesch S Schlee C Schwartz S Gokbuget N Hoelzer D Whole-exome sequencing in adult ETP-ALL reveals a high rate of DNMT3A mutations Blood 2013 121 4749 52 23603912
- [26]Murtaugh LC Stanger BZ Kwan KM Melton DA Notch signaling controls multiple steps of pancreatic differentiation Proc Natl Acad Sci USA 2003 100 14920 5 14657333 PMC299853
- [27]Calnan BJ Szychowski S Chan FK Cado D Winoto A A role for the orphan steroid receptor Nur77 in apoptosis accompanying antigen-induced negative selection Immunity 1995 3 273 82 7552993
- [28]Zhou T Cheng J Yang P Wang Z Liu C Su X Inhibition of Nur77/Nurr1 leads to inefficient clonal deletion of self-reactive T cells J Exp Med 1996 183 1879 92 8666944 PMC2192482
- [29]Lin B Kolluri SK Lin F Liu W Han YH Cao X Conversion of Bcl-2 from protector to killer by interaction with nuclear orphan receptor Nur77/TR3 Cell 2004 116 527 40 14980220
- [30]Thompson J Winoto A During negative selection, Nur77 family proteins translocate to mitochondria where they associate with Bcl-2 and expose its proapoptotic BH3 domain J Exp Med 2008 205 1029 36 18443228 PMC2373836
- [31]Wang A Rud J Olson CM Jr Anguita J Osborne BA Phosphorylation of Nur77 by the MEK-ERK-RSK cascade induces mitochondrial translocation and apoptosis in T cells J Immunol 2009 183 3268 77 19675165
- [32]Lee SL Wesselschmidt RL Linette GP Kanagawa O Russell JH Milbrandt J Unimpaired thymic and peripheral T cell death in mice lacking the nuclear receptor NGFI-B (Nur77) Science 1995 269 532 5 7624775
- [33]Schmitt TM Zuniga-Pflucker JC Induction of T cell development from hematopoietic progenitor cells by delta-like-1 in vitro Immunity 2002 17 749 56 12479821
- [34]Zhan Y Du X Chen H Liu J Zhao B Huang D Cytosporone B is an agonist for nuclear orphan receptor Nur77 Nature Chemical Biology 2008 4 548 56 18690216
- [37]Kim SJ Zhao H Hardikar S Singh AK Goodell MA Chen T A DNMT3A mutation common in AML exhibits dominant-negative effects in murine ES cells Blood 2013 122 4086 9 24167195 PMC3952368
- [38]Spencer DH Russler-Germain DA Ketkar S Helton NM Lamprecht TL Fulton RS CpG Island Hypermethylation Mediated by DNMT3A Is a Consequence of AML Progression Cell 2017 168 801 16 28215704 PMC5328582
- [39]Scourzic L Couronne L Pedersen MT Della Valle V Diop M Mylonas E DNMT3A(R882H) mutant and Tet2 inactivation cooperate in the deregulation of DNA methylation control to induce lymphoid malignancies in mice Leukemia 2016 30 1388 98 26876596 PMC4869893
- [40]Koya J Kataoka K Sato T Bando M Kato Y Tsuruta-Kishino T DNMT3A R882 mutants interact with polycomb proteins to block haematopoietic stem and leukaemic cell differentiation Nature Commun 2016 7 10924 27010239 PMC4820786
- [41]Thomas DA Kantarjian H Smith TL Koller C Cortes J O’Brien S Primary refractory and relapsed adult acute lymphoblastic leukemia: characteristics, treatment results, and prognosis with salvage therapy Cancer 1999 86 1216 30 10506707
Cited by
Sorted by citations
Deleting DNMT3A in CAR T cells prevents exhaustion and enhances antitumor activity
Prinzing, B., Zebley, C. C., Petersen, C. T., Fan, Y., Anido, A. A., Yi, Z., Nguyen, P., Houke, H., Bell, M., Haydar, D., et al. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.abh0272 · Cited by 349 · see citing works
Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling
Hormaechea-Agulla, D., Matatall, K. A., Le, D. T., Kain, B., Long, X., Kus, P., Jaksik, R., Challen, G. A., Kimmel, M., & King, K. Y. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2021.03.002 · Cited by 329 · see citing works
Self-citationLoss of Dnmt3a Immortalizes Hematopoietic Stem Cells In Vivo
Jeong, M., Park, H. J., Celik, H., Ostrander, E. L., Reyes, J. M., Guzman, A., Rodriguez, B., Lei, Y., Lee, Y., Ding, L., et al. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.03.025 · Cited by 243 · see citing works
Self-citationDNA methylation disruption reshapes the hematopoietic differentiation landscape
Izzo, F., Lee, S. C., Poran, A., Chaligne, R., Gaiti, F., Gross, B., Murali, R. R., Deochand, S. D., Ang, C., Jones, P. W., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0595-4 · Cited by 236 · see citing works
Mechanisms of T cell exhaustion guiding next-generation immunotherapy
Zebley, C. C., & Youngblood, B. (2022) · Trends in Cancer · doi:10.1016/j.trecan.2022.04.004 · Cited by 65 · see citing works
- Authors
- Kramer, A. C., Kothari, A., Wilson, W. C., Celik, H., Nikitas, J., Mallaney, C., Ostrander, E. L., Eultgen, E., Martens, A., Valentine, M. C., Young, A. L., Druley, T. E., Figueroa, M. E., Zhang, B., & Challen, G. A.
- Affiliations
- Washington University in St. Louis (US)
- University of Michigan (US)
- Corresponding author
- Challen, G A
- ORCID
- Venue
- Leukemia
- Published
- 2017-03-21
- Volume
- 31
- Issue
- 11
- Pages
- 2479-2490
- ISSN
- 0887-6924 (ISSN-L)
- 1476-5551
- PMC
- PMC5636646
- OpenAlex
- W2599031674
- Cited by
- 53
- References
- 3
- Citations by year
- 2026: 5 · 2025: 7 · 2024: 4 · 2023: 2 · 2022: 2 · 2021: 13 · 2020: 7 · 2019: 4 · 2018: 8 · 2017: 1
- FWCI
- 5.14
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Leukemia (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Alvin J. Siteman Cancer Center
- Georgia Clinical and Translational Science Alliance
- National Institutes of Health (UL1TR000448, UL1TR002345)
- National Heart, Lung, and Blood Institute (F32HL080880, T32HL007088)
- National Institute on Drug Abuse (R25DA027995)
- National Cancer Institute (T32CA113275, P30CA091842)
- National Institute of Allergy and Infectious Diseases (T32AI007172)
- National Institute of Diabetes and Digestive and Kidney Diseases (F31DK111058)
- National Center for Advancing Translational Sciences
- Topics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Acute Lymphoblastic Leukemia research
- Health Sciences › Medicine › Hematology › Acute Myeloid Leukemia Research
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and Retrovirus Studies
- Keywords
- DNMT3A, T-cell acute lymphoblastic leukemia, T cell development, DNA methylation, tumor suppressor, conditional knockout mouse model, hematopoietic cells, leukemic transformation
- MeSH terms
- DNA Methyltransferase 3A, Animals, Cell Line, DNA (Cytosine-5-)-Methyltransferases, Humans, Mice, Inbred C57BL, T-Lymphocytes, Apoptosis, Mice, Knockout, DNA Methylation, Mice, Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review