Largest GWAS of PTSD (N=20 070) yields genetic overlap with schizophrenia and sex differences in heritability
Open accessAbstract
The Psychiatric Genomics Consortium-Posttraumatic Stress Disorder group (PGC-PTSD) combined genome-wide case–control molecular genetic data across 11 multiethnic studies to quantify PTSD heritability, to examine potential shared genetic risk with schizophrenia, bipolar disorder, and major depressive disorder and to identify risk loci for PTSD. Examining 20 730 individuals, we report a molecular genetics-based heritability estimate ( h 2 SNP ) for European-American females of 29% that is similar to h 2 SNP for schizophrenia and is substantially higher than h 2 SNP in European-American males (estimate not distinguishable from zero). We found strong evidence of overlapping genetic risk between PTSD and schizophrenia along with more modest evidence of overlap with bipolar and major depressive disorder. No single-nucleotide polymorphisms (SNPs) exceeded genome-wide significance in the transethnic (overall) meta-analysis and we do not replicate previously reported associations. Still, SNP-level summary statistics made available here afford the best-available molecular genetic index of PTSD—for both European- and African-American individuals—and can be used in polygenic risk prediction and genetic correlation studies of diverse phenotypes. Publication of summary statistics for ∼ 10 000 African Americans contributes to the broader goal of increased ancestral diversity in genomic data resources. In sum, the results demonstrate genetic influences on the development of PTSD, identify shared genetic risk between PTSD and other psychiatric disorders and highlight the importance of multiethnic/racial samples. As has been the case with schizophrenia and other complex genetic disorders, larger sample sizes are needed to identify specific risk loci.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Multi-ethnic work has been slow in most disease areas, limiting even the opportunity to assess PRS in non-European cohorts.
“So far, multi-ethnic work has been slow in most disease areas54, limiting even the opportunity to assess PRS in non-European cohorts.”
From Clinical use of current polygenic risk scores may exacerbate health disparities (2019) · cites this paper as [54]
The Discussion says that external data resources needed for PRS are far less common for non-European populations and nonexistent for many, supporting the claimed limitation on assessing PRS. It does not establish that multi-ethnic work has been slow in most disease areas; that scope goes beyond what this PTSD paper states. (LLM, conf=0.82)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
No citation lists for this paper
No citation lists for this paper yet — checked again daily.
References 62 · Cited by 425
Research works printed but not linked: 43
- Kessler RC, Demler O, Frank RG, Olfson M, Pincus HA, Walters EE et al. Prevalence and treatment of mental disorders, 1990 to 2003. N Engl J Med 2005; 352: 2515–2523. 15958807 PMC2847367
- Davidson JR. Trauma: the impact of post-traumatic stress disorder. J Psychopharmacol Oxf Engl 2000; 14(2 Suppl 1): S5–S12. 10888026
- Myers C. A final contribution to the study of shell shock - being a consideration of unsettled points needing investigation. Lancet 1915; 185: 316–330.
- Stein MB, Jang KL, Taylor S, Vernon PA, Livesley WJ. Genetic and environmental influences on trauma exposure and posttraumatic stress disorder symptoms: a twin study. Am J Psychiatry 2002; 159: 1675–1681. 12359672
- Sartor CE, McCutcheon VV, Pommer NE, Nelson EC, Grant JD, Duncan AE et al. Common genetic and environmental contributions to post-traumatic stress disorder and alcohol dependence in young women. Psychol Med 2011; 41: 1497–1505. 21054919 PMC3377473
- Wolf EJ, Mitchell KS, Koenen KC, Miller MW. Combat exposure severity as a moderator of genetic and environmental liability to post-traumatic stress disorder. Psychol Med 2014; 44: 1499–1509. 24001428 PMC3972364
- Wolf EJ, Miller MW, Krueger RF, Lyons MJ, Tsuang MT, Koenen KC. Posttraumatic stress disorder and the genetic structure of comorbidity. J Abnorm Psychol 2010; 119: 320–330. 20455605 PMC3097423
- Koenen KC, Fu QJ, Ertel K, Lyons MJ, Eisen SA, True WR et al. Common genetic liability to major depression and posttraumatic stress disorder in men. J Affect Disord 2008; 105: 109–115. 17540456 PMC2254223
- Sartor CE, Grant JD, Lynskey MT, McCutcheon VV, Waldron M, Statham DJ et al. Common heritable contributions to low-risk trauma, high-risk trauma, posttraumatic stress disorder, and major depression. Arch Gen Psychiatry 2012; 69: 293–299. 22393221 PMC3594801
- Gilbertson MW, Shenton ME, Ciszewski A, Kasai K, Lasko NB, Orr SP et al. Smaller hippocampal volume predicts pathologic vulnerability to psychological trauma. Nat Neurosci 2002; 5: 1242–1247. 12379862 PMC2819093
- Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 2010; 467: 832–838. 20881960 PMC2955183
- Voight BF, Scott LJ, Steinthorsdottir V, Morris AP, Dina C, Welch RP et al. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet 2010; 42: 579–589. 20581827 PMC3080658
- Chen C-Y, Pollack S, Hunter DJ, Hirschhorn JN, Kraft P, Price AL. Improved ancestry inference using weights from external reference panels. Bioinforma Oxf Engl 2013; 29: 1399–1406. PMC3661048 23539302
- Chang CC, Chow CC, Tellier LC, Vattikuti S, Purcell SM, Lee JJ. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience 2015; 4: 7. 25722852 PMC4342193
- Galinsky KJ, Bhatia G, Loh P-R, Georgiev S, Mukherjee S, Patterson NJ et al. Fast Principal-Component Analysis Reveals Convergent Evolution of ADH1B in Europe and East Asia. Am J Hum Genet 2016; 98: 456–472. 26924531 PMC4827102
- Delaneau O, Marchini J, Zagury J-F. A linear complexity phasing method for thousands of genomes. Nat Methods 2012; 9: 179–181. 22138821
- Sanna S, Jackson AU, Nagaraja R, Willer CJ, Chen W-M, Bonnycastle LL et al. Common variants in the GDF5-UQCC region are associated with variation in human height. Nat Genet 2008; 40: 198–203. 18193045 PMC2914680
- Willer CJ, Sanna S, Jackson AU, Scuteri A, Bonnycastle LL, Clarke R et al. Newly identified loci that influence lipid concentrations and risk of coronary artery disease. Nat Genet 2008; 40: 161–169. 18193043 PMC5206900
- Ihaka R, Gentleman R. R: a language for data analysis and graphics. J Comput Graph Stat 1996; 5: 299–314.
- de Leeuw CA, Mooij JM, Heskes T, Posthuma D. MAGMA: generalized gene-set analysis of GWAS data. PLoS Comput Biol 2015; 11: e1004219. 25885710 PMC4401657
- Lee SH, Wray NR, Goddard ME, Visscher PM. Estimating missing heritability for disease from genome-wide association studies. Am J Hum Genet 2011; 88: 294–305. 21376301 PMC3059431
- Yang J, Lee SH, Goddard ME, Visscher PM. GCTA: a tool for genome-wide complex trait analysis. Am J Hum Genet 2011; 88: 76–82. 21167468 PMC3014363
- Yang J, Benyamin B, McEvoy BP, Gordon S, Henders AK, Nyholt DR et al. Common SNPs explain a large proportion of the heritability for human height. Nat Genet 2010; 42: 565–569. 20562875 PMC3232052
- Psychiatric GWAS Consortium - Bipolar Disorder. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. Nat Genet 2011; 43: 977–983. 21926972 PMC3637176
- Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium, Ripke S, Wray NR, Lewis CM, Hamilton SP, Weissman MM et al. A mega-analysis of genome-wide association studies for major depressive disorder. Mol Psychiatry 2013; 18: 497–511. 22472876 PMC3837431
- Bulik-Sullivan B, Finucane HK, Anttila V, Gusev A, Day FR, Loh P-R et al. An atlas of genetic correlations across human diseases and traits. Nat Genet 2015; 47: 1236–1241. 26414676 PMC4797329
- Stein MB, Chen C, Ursano RJ, Cai T, Gelernter J, Heeringa SG et al. Genome-wide association studies of posttraumatic stress disorder in 2 cohorts of us army soldiers. JAMA Psychiatry 2016; 73: 695–704. 27167565 PMC4936936
- Nestler E, Hyman S, Malenka R. Molecular Neuropharmacology: A Foundation for Clinical Neuroscience, Second Edition. McGraw-Hill Professional: New York, 2008.
- Cross-Disorder Group of the Psychiatric Genomics Consortium, Lee SH, Ripke S, Neale BM, Faraone SV, Purcell SM et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nat Genet 2013; 45: 984–994. 23933821 PMC3800159
- Finucane HK, Bulik-Sullivan B, Gusev A, Trynka G, Reshef Y, Loh P-R et al. Partitioning heritability by functional annotation using genome-wide association summary statistics. Nat Genet 2015; 47: 1228–1235. 26414678 PMC4626285
- Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium, Ripke S, Wray NR, Lewis CM, Hamilton SP, Weissman MM et al. A mega-analysis of genome-wide association studies for major depressive disorder. Mol Psychiatry 2013; 18: 497–511. 22472876 PMC3837431
- Nievergelt CM, Maihofer AX, Mustapic M, Yurgil KA, Schork NJ, Miller MW et al. Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: a genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene. Psychoneuroendocrinology 2015; 51: 459–471. 25456346
- Guffanti G, Galea S, Yan L, Roberts AL, Solovieff N, Aiello AE et al. Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women. Psychoneuroendocrinology 2013; 38: 3029–3038. 24080187 PMC3844079
- Xie P, Kranzler HR, Yang C, Zhao H, Farrer LA, Gelernter J. Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. Biol Psychiatry 2013; 74: 656–663. 23726511 PMC3810148
- Logue MW, Baldwin C, Guffanti G, Melista E, Wolf EJ, Reardon AF et al. A genome-wide association study of post-traumatic stress disorder identifies the retinoid-related orphan receptor alpha (RORA) gene as a significant risk locus. Mol Psychiatry 2012; 18: 937–942. 22869035 PMC3494788
- Kremen WS, Koenen KC, Afari N, Lyons MJ. Twin studies of posttraumatic stress disorder: differentiating vulnerability factors from sequelae. Neuropharmacology 2012; 62: 647–653. 21443892 PMC3153636
- Afifi TO, Asmundson GJG, Taylor S, Jang KL. The role of genes and environment on trauma exposure and posttraumatic stress disorder symptoms: a review of twin studies. Clin Psychol Rev 2010; 30: 101–112. 19892451
- Breslau N, Chilcoat HD, Kessler RC, Peterson EL, Lucia VC. Vulnerability to assaultive violence: further specification of the sex difference in post-traumatic stress disorder. Psychol Med 1999; 29: 813–821. 10473308
- CONVERGE Consortium. Sparse whole-genome sequencing identifies two loci for major depressive disorder. Nature 2015; 523: 588–591. 26176920 PMC4522619
- Benjet C, Bromet E, Karam EG, Kessler RC, McLaughlin KA, Ruscio AM et al. The epidemiology of traumatic event exposure worldwide: results from the World Mental Health Survey Consortium. Psychol Med 2016; 46: 327–343. 26511595 PMC4869975
- Koenen KC, Moffitt TE, Roberts AL, Martin LT, Kubzansky L, Harrington H et al. Childhood IQ and adult mental disorders: a test of the cognitive reserve hypothesis. Am J Psychiatry 2009; 166: 50–57. 19047325 PMC2705657
- Koenen KC, Moffitt TE, Poulton R, Martin J, Caspi A. Early childhood factors associated with the development of post-traumatic stress disorder: results from a longitudinal birth cohort. Psychol Med 2007; 37: 181–192. 17052377 PMC2254221
- Fisher HL, Caspi A, Poulton R, Meier MH, Houts R, Harrington H et al. Specificity of childhood psychotic symptoms for predicting schizophrenia by 38 years of age: a birth cohort study. Psychol Med 2013; 43: 2077–2086. 23302254 PMC3758773
- Authors
- Duncan, L. E., Ratanatharathorn, A., Aiello, A. E., Almli, L. M., Amstadter, A. B., Ashley-Koch, A. E., Baker, D. G., Beckham, J. C., Bierut, L. J., Bisson, J., Bradley, B., Chen, C.-Y., Dalvie, S., Farrer, L. A., Galea, S., Garrett, M. E., Gelernter, J. E., Guffanti, G., Hauser, M. A., Johnson, E. O., Kessler, R. C., Kimbrel, N. A., King, A., Koen, N., Kranzler, H. R., Logue, M. W., Maihofer, A. X., Martin, A. R., Miller, M. W., Morey, R. A., Nugent, N. R., Rice, J. P., Ripke, S., Roberts, A. L., Saccone, N. L., Smoller, J. W., Stein, D. J., Stein, M. B., Sumner, J. A., Uddin, M., Ursano, R. J., Wildman, D. E., Yehuda, R., Zhao, H., Daly, M. J., Liberzon, I., Ressler, K. J., Nievergelt, C. M., & Koenen, K. C.
- Affiliations
- Broad Institute (US)
- Columbia University (US)
- University of North Carolina at Chapel Hill (US)
- Emory University (US)
- Virginia Commonwealth University (US)
- University of California San Diego (US)
- Durham VA Health Care System (US)
- Washington University in St. Louis (US)
- Cardiff University (GB)
- Harvard University (US)
- University of Cape Town (ZA)
- Boston University (US)
- Yale University (US)
- Duke University (US)
- RTI International (US)
- University of Michigan (US)
- University of Pennsylvania (US)
- Duke Medical Center (US)
- Brown University (US)
- Columbia University Irving Medical Center (US)
- University of Illinois Urbana-Champaign (US)
- Uniformed Services University of the Health Sciences (US)
- James J. Peters VA Medical Center (US)
- Corresponding author
- Duncan, L E
- Koenen, K C
- ORCID
- Duncan, L E
- Ratanatharathorn, A
- Aiello, A E
- Almli, L M
- Amstadter, A B
- Baker, D G
- Beckham, J C
- Bierut, L J
- Bisson, J
- Bradley, B
- Dalvie, S
- Farrer, L A
- Galea, S
- Gelernter, J E
- Hauser, M A
- Johnson, E O
- Kessler, R C
- Kimbrel, N A
- King, A
- Koen, N
- Kranzler, H R
- Logue, M W
- Maihofer, A X
- Martin, A R
- Miller, M W
- Morey, R A
- Nugent, N R
- Rice, J P
- Ripke, S
- Roberts, A L
- Saccone, N L
- Smoller, J W
- Stein, D J
- Stein, M B
- Sumner, J A
- Uddin, M
- Ursano, R J
- Wildman, D E
- Yehuda, R
- Zhao, H
- Daly, M J
- Liberzon, I
- Ressler, K J
- Nievergelt, C M
- Koenen, K C
- Venue
- Molecular Psychiatry
- Published
- 2017-04-25
- Volume
- 23
- Issue
- 3
- Pages
- 666-673
- ISSN
- 1359-4184 (ISSN-L)
- 1476-5578
- PMC
- PMC5696105
- OpenAlex
- W2610359325
- Cited by
- 425
- References
- 62
- Citations by year
- 2026: 11 · 2025: 30 · 2024: 32 · 2023: 38 · 2022: 65 · 2021: 57 · 2020: 49 · 2019: 69 · 2018: 56 · 2017: 16 · 2016: 1
- FWCI
- 7.93
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Molecular Psychiatry (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- ORCA Online Research @Cardiff (Cardiff University) (acceptedVersion)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion, cc-by-nc-nd)
- Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
- DukeSpace (Duke University) (submittedVersion, cc-by-nc-nd)
- eScholarship (California Digital Library) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by-nc-nd)
- Refubium (Universitätsbibliothek der Freien Universität Berlin) (submittedVersion, cc-by-nc-nd)
- Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver
- UNC Libraries
- Funders
- Howard Hughes Medical Institute
- U.S. Department of Veterans Affairs (I01 BX002150, I01 CX000431)
- Harvard University
- Sunovion
- National Alliance for Research on Schizophrenia and Depression
- Cohen Veterans Bioscience
- One Mind
- National Institutes of Health (5u01mh094432-04)
- Stanley Center for Psychiatric Research, Broad Institute
- Laureate Institute for Brain Research, University of Tulsa
- National Institute of Mental Health (U01MH109539, U01 MH094432, U01MH109536, R01MH079806, K24MH094614, R01MH106595, R01MH111671)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (P2CHD050924)
- Topics
- Social Sciences › Psychology › Clinical Psychology › Posttraumatic Stress Disorder Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Health Sciences › Medicine › Psychiatry and Mental health › Schizophrenia research and treatment
- Keywords
- post-traumatic stress disorder, schizophrenia, bipolar disorder, major depressive disorder, genetic correlation, polygenic risk prediction, genetic susceptibility loci, African Americans, European Americans, psychiatric genetics
- MeSH terms
- Adult, Bipolar Disorder, Black or African American, Major Depressive Disorder, Depressive Disorder, Major, Female, Humans, Male, Middle Aged, Risk Factors, Schizophrenia, Sex Characteristics, Sex Factors, Stress Disorders, Post-Traumatic, Case-Control Studies, Genetic Predisposition to Disease, Multifactorial Inheritance, Polymorphism, Single Nucleotide, White People, Genome-Wide Association Study
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review