Chance and necessity in the evolution of minimal metabolic networks

Cited by (243)

Items 201–243 of 243

  1. Synthetic Biology and Darwinism
    Thomas Heams · 2014 · Springer eBooks
  2. Inferring Minimal Feasible Metabolic Networks of Escherichia coli
    Da Jiang, Shuigeng Zhou, Hui Liu, Yi‐Ping Phoebe Chen · 2009 · Applied Biochemistry and Biotechnology
  3. Patterns of interactions of reaction pairs in metabolic networks.
    József Bruck, Oliver Ebenhöh, Reinhart Heinrich · 2006 · PubMed
  4. Evolution of Microbial Communities; or, On the Origins of Bacterial Species
    David Wayne Ussery, Trudy M. Wassenaar, Stefano Borini · 2008 · Computational biology
  5. A genome-scale study of metabolic complementation in endosymbiotic consortia: the case of the cedar aphid
    Miguel Ponce-de-León, Daniel Tamarit, Jorge Calle-Espinosa, Matteo Mori, Amparo Latorre, Francisco Montero, Juli G. Peretó · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  6. Stoichiometric modeling of artificial string chemistries
    Devlin C. Moyer, Alan R. Pacheco, David B. Bernstein, Daniel Segrè · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  7. Autophagy: possible origin of essential amino acids
    Genshiro Esumi · 2020
  8. Metabolic complexity increases adaptability
    Claus Jonathan Fritzemeier, Sajjad Ghaffarinasab, Felix Lieder, Balázs Szappanos, Florian Jarre, Balázs Papp, Csaba Pál, Martin J. Lercher · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  9. Dissection of amino acid acquisition pathways in Borrelia burgdorferi uncovers unique physiological responses
    Arti Kataria, Eric Bohrnsen, Benjamin H. Schwarz, Dan Drecktrah, D. Scott Samuels, Aaron Carmody, Lara M. Myers, Ashley M. Groshong · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  10. Molecular Evolution, Networks in
    2011 · Springer eBooks
  11. Estudos evolutivos do divisomo, um complexo multiprotéico responsável pela divisão bacteriana
    Robson Francisco de Souza · 2007 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  12. A Novel Method for Flux Distribution Computation in Metabolic Networks
    Da Jiang, Shuigeng Zhou, Jihong Guan · 2007 · Springer eBooks
  13. Evolution of Metabolic Networks
    Eivind Almaas · 2010
  14. Integrative bioinformatics of metabolic networks.
    Richard A. Notebaart · 2009 · Radboud Repository (Radboud University)
  15. Genomic Signatures of Intracellularity: Evolutionary Patterns and Paces in Bacterial Mutualists and Parasites
    Jennifer J. Wernegreen · 2014 · ASM Press eBooks
  16. Minimale Flussmoden als theoretisches Konzept für die funktionelle Analyse und modulare Beschreibung zellulärer Stoffwechselnetzwerke
    Sabrina Hoffmann · 2012 · edoc Publication server (Humboldt University of Berlin)
  17. Genome-wide Studies of Mycolic Acid Bacteria: Computational Identification and Analysis of a Minimal Genome
    Frederick Kamanu · 2012 · King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)
  18. Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial
    Laura E. Williams, Jennifer J. Wernegreen · 2010
  19. Development of Constraint-Based System-Level Models of Microbial Metabolism
    Ali Navid · 2012 · Methods in molecular biology
  20. Evolution of metabolic networks
    Eleni Giannoulatou · 2006
  21. Building Metabolic Models From First Principles
    Kirti Jain, Mahendra Kumar Prajapat, Supreet Saini · 2016 · Elsevier eBooks
  22. Metabolic Network Analysis of Apicomplexan Parasites to Identify Novel Drug Targets
    Stacy S. Hung · 2014 · TSpace (University of Toronto)
  23. Towards the complete picture
    Bohler · 2017
  24. DOCTEUR DE L'UNIVERSITÉ DE BORDEAUX
    Youssef Sbai · 2015
  25. Molecular Evolution, Networks in
    Andreas Wagner · 2009 · Springer eBooks
  26. Genotype networks, innovation, and robustness in sulfur metabolism
    João F. Matias Rodrigues, Andreas Wagner · 2010 · arXiv (Cornell University)
  27. Metabolic Modeling and Omics Data Integration: A Systems Biology Approach to Food Science
    Igor Marín de Mas, Marina de Leeuw, Pouyan Ghaffari, Lars Keld Nielsen · 2020 · Elsevier eBooks
  28. Metabolic Networks, Applications
    Kai Kruse, Guilhem Chalancon, M. Madan Babu · 2013 · Springer eBooks
  29. Nutrition or nature: disentangling the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Environmental systems biology of temperature adaptation in yeast
    Caroline M. Paget · 2013 · Research Explorer (The University of Manchester)
  31. Computational modeling of the evolutionary transition from C3 to C4 photosynthesis
    Armin Dadras, Sayed‐Amir Marashi, Kaveh Kavousi, Ali Mohammad Banaei‐Moghaddam · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  32. Correlation-enhanced viable core in metabolic networks
    Mi Jin Lee, Sudo Yi, Deok‐Sun Lee · 2024 · Chaos Solitons & Fractals
  33. Additional file 8 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  34. Additional file 9 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  35. Additional file 10 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  36. Additional file 11 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  37. Additional file 7 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Daniel Rios Garza, F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  38. Additional file 2 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  39. Additional file 6 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  40. Additional file 5 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  41. Additional file 4 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  42. Additional file 3 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare
  43. Additional file 1 of Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
    Garza, Daniel R., F. A. Bastiaan von Meijenfeldt, Bram van Dijk, Annemarie Boleij, Martijn A. Huynen, Bas E. Dutilh · 2022 · Figshare