Genome-wide analysis of a long-term evolution experiment with Drosophila

Cited by (446)

Items 301–400 of 446

  1. Reduced Parallel Gene Expression Evolution With Increasing Genetic Divergence—A Hallmark of Polygenic Adaptation
    Dagny A. V. Thorhölludottir, Sheng‐Kai Hsu, Neda Barghi, François Mallard, Viola Nolte, Christian Schlötterer · 2025 · Molecular Ecology
  2. Continent-wide differentiation of fitness traits and patterns of climate adaptation among European populations of Drosophila melanogaster
    Esra Durmaz Mitchell, Envel Kerdaffrec, Ewan Harney, Tânia F. Paulo, Marija Savić Veselinović, Marija Tanasković, Venera I. Tyukmaeva, Teresa M. Abaurrea, Cansu Fidan Aksoy, Eliza Argyridou et al. · 2025 · Evolution Letters
  3. The Great Evolutionary Divide: Two Genomic Systems Biologies of Aging
    Michael R. Rose, Larry G. Cabral, Mark Phillips, Grant A. Rutledge, Kevin H. Phung, Laurence D. Mueller, Lee F. Greer · 2014 · Interdisciplinary topics in gerontology and geriatrics
  4. Probing pathways of adaptation with continuous evolution
    Ziwei Zhong, Chang C. Liu · 2019 · Current Opinion in Systems Biology
  5. Evolution of reduced mate harming tendency of males in Drosophila melanogaster populations selected for faster life history
    Tanya Verma, Anuska Mohapatra, Harish Kumar Senapati, Rakesh Kumar Muni, Purbasha Dasgupta, Bodhisatta Nandy · 2022 · Behavioral Ecology and Sociobiology
  6. A science-based review of the world's best-selling book on aging
    Charles Brenner · 2022 · Archives of Gerontology and Geriatrics
  7. Rapid, nonparallel genomic evolution of Brassica rapa (field mustard) under experimental drought
    Stephen E. Johnson, Silas B. Tittes, Steven J. Franks · 2023 · Journal of Evolutionary Biology
  8. Patterns of physiological decline due to age and selection inDrosophila melanogaster
    Parvin Shahrestani, Julian Bryant Wilson, Laurence D. Mueller, Michael R. Rose · 2016 · Evolution
  9. New views on the selection acting on genetic polymorphism in central metabolic genes
    Walter F. Eanes · 2016 · Annals of the New York Academy of Sciences
  10. Sex solves Haldane’s dilemma
    Dónal A. Hickey, G. Brian Golding · 2019 · Genome
  11. An Evolutionary Analysis of Healthspan Extension Using Diet: Have We Come to the End of the Ponce de Leon Trail?
    Grant A. Rutledge, Michael R. Rose · 2015 · Healthy ageing and longevity
  12. Genome stability: An evolutionary perspective
    Igor Kovalchuk · 2021 · Elsevier eBooks
  13. An Evolutionary and Genomic Approach to Challenges and Opportunities for Eliminating Aging
    Michael R. Rose, Grant A. Rutledge, Kevin H. Phung, Mark Phillips, Lee F. Greer, Laurence D. Mueller · 2014 · Current Aging Science
  14. The effects of agroforestry and conventional banana plantations on multiple dimensions of butterfly diversity in the Atlantic Forest
    Dirleane O. Rossato, Cristiano Agra Iserhard, Gabriel Nakamura, Leandro Duarte, Nicola J. Nadeau · 2025 · Biodiversity and Conservation
  15. Statistical Methods for studying Genetic Variation in Populations
    Suyash Shringarpure · 2012
  16. Haplotype based testing for a better understanding of the selective architecture
    Haoyu Chen, Marta Pelizzola, Andreas Futschik · 2023 · BMC Bioinformatics
  17. Populations adapt to fluctuating selection using derived and ancestral allelic diversity
    Wei-Hsiang Lin, Mark J. Rocco, Amelia Bertozzi-Villa, Edo L. Kussell · 2015 · Evolution
  18. Using known QTLs to detect directional epistatic interactions
    Montgomery Slatkin, Mark Kirkpatrick · 2012 · Genetics Research
  19. Genomic Signatures of Local Adaptation in Clam Shrimp (Eulimnadia texana) from Natural Vernal Pools
    James G. Baldwin-Brown, Anthony D. Long · 2020 · Genome Biology and Evolution
  20. Transcriptional regulation underlying the temperature response of embryonic development rate in the winter moth
    Natalie E. van Dis, Judith E. Risse, Agata S. Pijl, Roelof A. Hut, Marcel E. Visser, Bregje Wertheim · 2022 · Molecular Ecology
  21. Large changes in detected selection signatures after a selection limit in mice bred for voluntary wheel-running behavior
    David A. Hillis, Liran Yadgary, George M. Weinstock, Fernando Pardo‐Manuel de Villena, Daniel Pomp, Theodore Garland · 2024 · PLoS ONE
  22. Beyond QTL Cloning
    Jill T. Anderson, Thomas Mitchell‐Olds · 2010 · PLoS Genetics
  23. Virulence of a Malaria Parasite, Plasmodium mexicanum, for Its Sand Fly Vectors, Lutzomyia vexator and Lutzomyia stewarti (Diptera: Psychodidae)
    Jos. J. Schall · 2011 · Journal of Medical Entomology
  24. Natural alleles at the Doa locus underpin evolutionary changes in Drosophila lifespan and fecundity
    Katja M. Hoedjes, Hristina Kostic, Laurent Keller, Thomas Flatt · 2022 · Proceedings of the Royal Society B Biological Sciences
  25. Distance to trait optimum is a crucial factor determining the genomic signature of polygenic adaptation
    Eirini Christodoulaki, Neda Barghi, Christian Schlötterer · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Tropical High-Altitude Insects Show Limited Capacity to Handle High Temperatures
    Harshad Vijay Mayekar, Pooran Singh Solanki, Homica Arya, Rajaguru Aradhya, Prashanth Suravajhala, Volker Loeschcke, Subhash Rajpurohit · 2022 · SSRN Electronic Journal
  27. Experimental evolution-induced transcriptome and phenotype responses of Drosophila melanogaster to novel thermal environments
    Dau Dayal Aggarwal, Prachi Mishra, Yashvant Patel, Manvender Singh, Vijendra K. Sharma, Abraham Korol, Pawel Michalak · 2025 · Journal of Experimental Biology
  28. Four steps toward the control of aging: following the example of infectious disease
    Michael R. Rose, Larry G. Cabral, James N. Kezos, Thomas T. Barter, Mark Phillips, Barbara Lynn Smith, Terence C. Burnham · 2015 · Biogerontology
  29. Tests of Selection in Pooled Case-Control Data: An Empirical Study
    Nitin Udpa, Dan Zhou, Gabriel George Haddad, Vineet Bafna · 2011 · Frontiers in Genetics
  30. Building Bridges from Genome to Physiology Using Machine Learning and Drosophila Experimental Evolution
    James N. Kezos, Thomas T. Barter, Mark Phillips, Larry G. Cabral, Zachary S. Greenspan, Kenneth Ryan Arnold, Grigor Azatian, José Buenrostro, Punjot Singh Bhangoo, Annie Khong et al. · 2023 · Physiological and Biochemical Zoology
  31. Evolution and the Future of Medicine
    Michael R. Rose, Grant A. Rutledge, Larry G. Cabral, Lee F. Greer, Andrea L. Canfield, Brit Cervantes · 2016 · Elsevier eBooks
  32. Genomics of Compensatory Adaptation in Experimental Populations of Aspergillus nidulans
    Jeremy R. Dettman, Nicolas Rodrigue, Sijmen E. Schoustra, Rees Kassen · 2017 · G3 Genes Genomes Genetics
  33. Adaptive genetic variation in Scots pine (Pinus sylvestris L.) in Scotland
    Matti J. Salmela · 2011 · ERA
  34. Selective sweeps in a nutshell; the genomic footprint of rapid insecticide resistance evolution in an insect
    Bernarda Calla, Mark Demkovich, Joel P. Siegel, João Paulo Gomes Viana, Kimberly K. O. Walden, Hugh M. Robertson, May R. Berenbaum · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  35. Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
    Lucas P. Henry, Julien F. Ayroles · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  36. Genetics and Population Analysis
    Fotis Tsetsos, Petros Drineas B, Peristera Paschou · 2018 · Elsevier eBooks
  37. Single-nucleus multiome ATAC and RNA sequencing reveals the molecular basis of thermal acclimation in Drosophila melanogaster embryos
    Thomas S. O’Leary, Emily E. Mikucki, Sumaetee Tangwancharoen, Joseph R. Boyd, Sara Helms Cahan, Seth E. Frietze, Brent L. Lockwood · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  38. Estimating the additive genetic variance for relative fitness from changes in allele frequency
    Manas Geeta Arun, Aidan Angus-Henry, Darren J. Obbard, Jarrod D. Hadfield · 2025 · Genetics
  39. Leveraging low-cost short-read sequencing: revolutionizing complex trait genetics
    Sarah N. Ruckman, Anthony D. Long · 2026 · Molecular Biology and Evolution
  40. Convergence and parallelism in the evolution of plant metabolism
    Federico Scossa, Mustafa Bulut, Thomas Naake, John C. D’Auria, Alisdair Robert Fernie · 2026 · Journal of Integrative Plant Biology
  41. Machine learning for evolutionary genetics and molecular evolution
    Nicolas Svetec, UnJin Lee, Li Zhao · 2026 · Trends in Genetics
  42. Are You Willing to Die for Reductionism?
    Michael R. Rose, Grant A. Rutledge · 2019 · Springer eBooks
  43. Insect Models to Study Human Lipid Metabolism Disorders
    Thomas B Rundell, Thomas Baranski · 2024 · Advances in experimental medicine and biology
  44. Statistical signature of subtle behavioral changes in large-scale assays
    Alexandre Blanc, François Laurent, Alex Barbier–Chebbah, Hugues Van Assel, Ben Cocanougher, Benjamin M.W. Jones, Peter Hague, Marta Zlatic, Rayan Chikhi, Christian L. Vestergaard et al. · 2025 · PLoS Computational Biology
  45. Genomics of Experimental Adaptive Radiation in the Cryptic Coloration of Feather Lice
    James G. Baldwin-Brown, Scott M. Villa, Emiko M. Waight, Kevin P. Johnson, Sarah E. Bush, Dale H. Clayton, Michael D. Shapiro · 2025 · Genome Biology and Evolution
  46. The illusion of polygenicity in pool-seq genetic mapping studies: insufficient power can mask simple genetic architectures
    Anthony D. Long, Katherine M. Hanson, Stuart J. Macdonald · 2026 · Genetics
  47. Sympatric Differentiation and Speciation: Insights from Drosophila Studies
    Eugenia Rashkovetsky, Zeev Frenkel, Pawel Michalak, Abraham Korol · 2015 · Springer eBooks
  48. Is gene duplication a viable explanation for the origination of biological information and complexity?
    Joseph Hannon Bozorgmehr · 2010 · Complexity
  49. One function of sex — an empirical study of genetic and ecological variation
    N. Gilbert, D. A. Raworth, Geoff R. Allen · 2010 · The Canadian Entomologist
  50. Controlling for P‐value inflation in allele frequency change in experimental evolution and artificial selection experiments
    Petri Kemppainen, Bernt Rønning, Thomas Kvalnes, Ingerid J. Hagen, Thor Harald Ringsby, Anna Maria Billing, Henrik Pärn, Sigbjørn Lien, Arild Husby, Bernt‐Erik Sæther et al. · 2016 · Molecular Ecology Resources
  51. A Scalable Algorithm for Clonal Reconstruction from Sparse Time Course Genomic Sequencing Data
    Wazim Mohammed Ismail, Haixu Tang · 2024 · Journal of Bioinformatics and Systems Biology
  52. An Evolutionary Analysis of Health
    Kenneth Ryan Arnold, James N. Kezos, Grant A. Rutledge, Thomas T. Barter, Michael R. Rose · 2020 · Healthy ageing and longevity
  53. Guidelines for the design of evolve and resequencing studies
    Robert Kofler, Christian Schlötterer · 2013 · arXiv (Cornell University)
  54. A Genetic Study of the Development of Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae): Ecological, Evolutionary, and Forensic Importance of the Secondary Screwworm
    Ernesto Ramos · 2015 · OakTrust (Texas A&M University Libraries)
  55. The role of adaptive evolution in the success of an agricultural weed, Helianthus annuus
    Emily B. M. Drummond · 2019 · cIRcle (University of British Columbia)
  56. The genomics of development rate variation in Cochliomyia macellaria (Diptera: Calliphoridae)
    Lewis, Sarah E. · 2018 · ProQuest Demo Repository
  57. A generalised approach to detect selected haplotype blocks in Evolve and Resequence experiments
    Kathrin Anna Otte, Christian Schlötterer · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  58. Genome-wide evolutionary response of European oaks since the Little Ice Age
    Dounia Saleh, Jun Chen, Jean‐Charles Leplé, Thibault Leroy, Laura Truffaut, Benjamin Dencausse, Céline Lalanne, Karine Labadie, Isabelle Lesur, G. D. Bert et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  59. Linking selection to demography in experimental evolution of active death in a unicellular organism
    Nathalie Zeballos, Océane Rieu, Stanislas Fereol, Christelle Leung, Luis‐Miguel Chevin · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  60. Estimating Haplotype Structure and Frequencies: A Bayesian Approach to Unknown Design in Pooled Genomic Data
    Yuexuan Wang, Ritabrata Dutta, Andreas Futschik · 2024 · Journal of Computational Biology
  61. Evolution of mate harm resistance in females from Drosophila melanogaster populations selected for faster development and early reproduction
    Tanya Verma, Susnato Das, Saunri Dhodi Lobo, Ashish Kumar Mishra, Soumi Bhattacharyya, Bodhisatta Nandy · 2024 · Journal of Evolutionary Biology
  62. Age-Dependent Immune Defense Against Beauveria bassiana in Long- and Short-Lived Drosophila Populations
    Elnaz Bagheri, Han Yin, Arnie Lynn C. Bengo, Kshama Ekanath Rai, Taryn Conyers, Robert Courville, Mansour Abdoli, Molly K. Burke, Parvin Shahrestani · 2025 · Journal of Fungi
  63. Parallel but distinct adaptive routes in the budding and fission yeasts after 10,000 generations of experimental evolution
    Arnaud N’Guessan, Vivian Wang, Christopher W. Bakerlee, Jenya Belousova, Greta Brenna, Megan E. Dillingham, Thomas Dupic, Shreyas Gopalakrishnan, Juhee Goyal, Misha Gupta et al. · 2026 · Nature Ecology & Evolution
  64. Evolutionary Dynamics of Gene Expression During Thermal Adaptation in Drosophila subobscura
    Marta A. Santos, Marta A. Santos, Mauro Santos A, Mauro Santos A, Margarida Matos, Pedro Simões · 2026 · Genome Biology and Evolution
  65. Beyond fixation: persistent genetic variation under intense selection
    Kenneth Ryan Arnold, Zachary S. Greenspan, Ryan D. Robinson, Anastasia Pupo, Valeria Vanessa Chavarin, Kevin S. Chang, Corrina O. Cannell, Miao Qi, Laurence D. Mueller, Michael R. Rose et al. · 2026 · Molecular Biology and Evolution
  66. Mr. Darwin's misfortune: The burdens of knowing too much
    Kenneth M. Weiss · 2011 · Evolutionary Anthropology Issues News and Reviews
  67. Unraveling the Molecular Basis of Stabilizing Selection by Experimental Evolution
    Christian Schlötterer · 2023 · Genome Biology and Evolution
  68. Dissecting Fluctuating Selection: A Unified Population and Quantitative Genetics Framework
    Esdras Tuyishimire, Molly K. Burke, Elizabeth G. King · 2026 · Genome Biology and Evolution
  69. Experimental Evolution and Next Generation Sequencing Illuminate the Evolutionary Trajectories of Microbes
    Mario A. Fares · 2015 · Springer eBooks
  70. Resampling the pool of genotypic possibilities: an adaptive function of sexual reproduction
    Dónal A. Hickey, G. Brian Golding · 2021 · BMC Ecology and Evolution
  71. Different Genomic Changes Underlie Adaptive Evolution in Populations of Contrasting History
    Sofia G. Seabra, Inês Fragata, Marta A. Santos, Gonçalo S. Faria, Marta A. Santos, Vítor C. Sousa, Pedro Simões, Margarida Matos · 2019 · Molecular Biology and Evolution
  72. Genetic variation in the chicken genome: insights in selection
    Martin Elferink · 2011
  73. Spatial Structure in Extinction and Range Expansion: Models and Experiments
    Christopher Weiss‐Lehman · 2017 · CU Scholar (University of Colorado Boulder)
  74. An examination of the evolve-and-resequence method using Drosophila simulans
    John K. Kelly, Kimberly A. Hughes · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  75. Identifying genomic markers associated with female re-mating rate in Drosophila pseudoobscura by replicated bulk segregant analysis
    R. Axel W. Wiberg, Tom A. R. Price, Nina Wedell, Michael Gordon Ritchie · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Mutation Accumulation Aging Theory
    Laurence D. Mueller · 2019 · Springer eBooks
  77. Organic farming - Deep genotyping reveals specific selection footprints in barley populations
    Michael C. Schneider, M.H. Barbosa, Agim Ballvora, Jens Léon · 2021 · Research Square
  78. Analysis and Simulation Methods for Artificial Selection Experiments in the Investigation of the Genetic Basis of Complex Traits
    Darren Kessner · 2014 · eScholarship (California Digital Library)
  79. Adaptation
    Michael R. Rose, Molly K. Burke · 2013 · Elsevier eBooks
  80. Experimental Evolution
    Mark A Phillips, Michael R. Rose · 2018
  81. Statistical signature of subtle behavioural changes in large-scale behavioural assays
    Alexandre Blanc, François Laurent, Alex Barbier–Chebbah, Ben Cocanougher, Benjamin M.W. Jones, Peter Hague, Marta Zlatic, Rayan Chikhi, Christian L. Vestergaard, Tihana Jovanic et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  82. Directional selection failed to produce changes in olfactory Y-maze learning and memory but induced changes in climbing phenotypes
    Victoria Hamlin, Jamie Baumann, Reiley Heffern, Alaina Franke, Elizabeth G. King · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  83. Fitness – ein Begriff und seine Deutung
    Veiko Krauß · 2014 · Springer eBooks
  84. Variation, selection and adaptation in fruit flies
    Monica Harrington · 2010 · Lab Animal
  85. Why Natural Selection Cannot Explain Biological Evolution
    Stephen P. Smith · 2010
  86. Genome-wide targets of selection: female response to experimental removal of sexual selection in Drosophila melanogaster
    Paolo Innocenti, Ilona Flis, Edward H. Morrow · 2013 · bioRxiv (Cold Spring Harbor Laboratory)
  87. Drosophila don't make a clean sweep
    Mary R. Muers · 2010 · Nature Reviews Genetics
  88. Genome Features of Dark-fly
    Naoyuki Fuse, Tasuku Kitamura, Takashi Haramura, Kentaro Arikawa, Michio Imafuku · 2013 · SpringerBriefs in biology
  89. Some Inconvenient Implications
    Donald S. Maier · 2012 · The international library of environmental, agricultural and food ethics/The International library of environmental, agricultural and food ethics
  90. Wide genome involvement in response to long-term selection for antibody response in an experimental population of White Leghorn chickens
    Mette Lillie, Zheya Sheng, Christa Ferst Honaker, Ben Dorshorst, P.B. Siegel, Örjan Carlborg · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
  91. 2010 Comparative Genomics
    John C. Avise · 2014 · Elsevier eBooks
  92. Adaptive constraint and its natural rescuers: insights from Drosophila aldehyde dehydrogenase
    Mahul Chakraborty, James D. Fry · UR Research (University of Rochester)
  93. Molecular basis of life-history evolution: a tale of two insects
    Silvia C. Remolina · 2011 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
  94. Editorial: Genomics of Experimental Evolution
    Lee F. Greer · 2017 · Frontiers in Genetics
  95. Pooled population resequencing of clam shrimp ( Eulimnadia texana ) from different vernal pools reveals signatures of local adaptation
    James G. Baldwin-Brown, Anthony D. Long · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  96. Patterns of Selection Reveal Shared Molecular Targets over Short and Long Evolutionary Timescales
    Jing Li, Ignacio Vázquez-Garćıa, Karl O. Persson, Asier González, Jia‐Xing Yue, Benjamin P. Barré, Michael N. Hall, Anthony D. Long, Jonas Warringer, Ville Mustonen et al. · 2018 · SSRN Electronic Journal
  97. C4 photosynthetic evolution : sub-types, diversity, and function within the grass tribe Paniceae
    Jacob D. Washburn · 2017 · MOspace Institutional Repository (University of Missouri)
  98. The adaptive function of sexual reproduction: resampling the genotype pool
    Dónal A. Hickey, G. Brian Golding · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  99. Multiple Haplotype Reconstruction from Allele Frequency Data
    Marta Pelizzola, Merle Behr, Housen Li, Axel Munk, Andreas Futschik · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  100. The adaptive function of sexual reproduction: resampling the pool of genotypic possibilities.
    Dónal A. Hickey, Brian Golding · 2021 · Research Square