Cited by 928Evolution and Paleontology StudiesPaleontology and Evolutionary BiologyGenomics and Phylogenetic Studies

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A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

Prum, Richard O., Berv, Jacob S., Dornburg, Alex, Field, Daniel J., Townsend, Jeffrey P., Lemmon, Emily Moriarty, Lemmon, Alan R.·2016·Nature

DOI 10.1038/nature19417

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The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,959
Paleogene Fossil Birds
Mayr, G. (2009) · Fascinating life sciences · doi:10.1007/978-3-030-87645-6 · Cited by 561
Taxon sampling and the accuracy of phylogenetic analyses
(2008) · Journal of Systematics and Evolution · doi:10.3724/sp.j.1002.2008.08016 · Cited by 553
Taxon sampling and the accuracy of phylogenetic analyses
Tracy, Heath, Shannon, Hedtke, David, D., & Hillis (2008) · Journal of Systematics and Evolution · Cited by 358
Statistical Methods in Molecular Evolution
Whelan, S., & Nielsen, R. (2006) · Systematic Biology · doi:10.1080/10635150600899780 · Cited by 252
The Origin and Evolution of Birds
DNN, & Feduccia, A. (1997) · Colonial Waterbirds · doi:10.2307/1521796 · Cited by 224
Mesozoic birds: above the heads of dinosaurs
(2003) · Choice Reviews Online · doi:10.5860/choice.40-5235 · Cited by 208

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New species of Primozygodactylus from Messel and the ecomorphology and evolutionary significance of early Eocene zygodactylid birds (Aves, Zygodactylidae)
Mayr, G. (2016) · Historical Biology · doi:10.1080/08912963.2016.1261135 · Cited by 15
“A sister group relationship between zygodactylids and passerines is of particular interest in light of the fact that molecular analyses identified the zygodactyl Psittaciformes (parrots) as the closest extant relatives of passerines (e.g. Ericson et al. 2006; Hackett et al. 2008; Prum et al. 2015).”
Background
A new species of Opisthodactylus Ameghino, 1891 (Aves, Rheidae), from the late Miocene of northwestern Argentina, with implications for the paleobiogeography and phylogeny of rheas
Noriega, J. I., Jordan, E. A., Vezzosi, R. I., & Areta, J. I. (2017) · Journal of Vertebrate Paleontology · doi:10.1080/02724634.2017.1278005 · Cited by 18
“Radiometric and biochronological analyses based on fossil mammals indicate that the age of the Andalhuala Formation ranges from the late Miocene (lower levels) to early Pliocene (upper levels) (Marshall and Patterson, 1981; Bossi and Muruaga, 2009; Reguero and Candela, 2011).”
Background
Field Measurements of Gastrointestinal pH of New World Vultures in Guyana
Graves, G. R. (2017) · Journal of Raptor Research · doi:10.3356/jrr-16-62.1 · Cited by 15
On the diverse and widely ignored Paleocene avifauna of Menat (Puy-de-Dôme, France): new taxonomic records and unusual soft tissue preservation
Mayr, G., Hervet, S., & Buffetaut, É. (2018) · Geological Magazine · doi:10.1017/s0016756818000080 · Cited by 16
“…years after the K/Pg extinction event, the avifauna includes taxa that appear to be phylogenetically widely separated, which adds to the mounting evidence (e.g. Prum et al. 2015; Mayr, 2017a) that the initial divergences within neoavian birds already occurred within the latest Cretaceous period.”
Background
The cranio-mandibular complex of the nightjar Systellura longirostris (Aves, Caprimulgiformes): functional relationship between osteology, myology and feeding
Ferreira, M. M. D., Tambussi, C. P., Degrange, F. J., Pestoni, S., & Tirao, G. A. (2018) · Zoology · doi:10.1016/j.zool.2018.11.001 · Cited by 16
Hatching Asynchrony in Oviraptorid Dinosaurs Sheds Light on Their Unique Nesting Biology
Yang, T.-R., Engler, T., Lallensack, J. N., Samathi, A., Makowska, M. G., & Schillinger, B. (2019) · Integrative Organismal Biology · doi:10.1093/iob/obz030 · Cited by 16
Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system
Dornburg, A., Wcisel, D. J., Zapfe, K., Ferraro, E., Roupe-Abrams, L., Thompson, A. W., Braasch, I., Ota, T., & Yoder, J. A. (2021) · Immunogenetics · doi:10.1007/s00251-021-01225-6 · Cited by 16
Self-citation
Reconstruction of body cavity volume in terrestrial tetrapods
Clauß, M., Nurutdinova, I., Meloro, C., Gunga, H., Jiang, D., Koller, J., Herkner, B., Sander, P. M., & Hellwich, O. (2016) · Journal of Anatomy · doi:10.1111/joa.12557 · Cited by 15
Resources for phylogenomic analyses of Australian terrestrial vertebrates
Bragg, J. G., Potter, S., Bi, K., Catullo, R. A., Donnellan, S. C., Eldridge, M. D. B., Joseph, L., Keogh, J. S., Oliver, P. M., Rowe, K. C., et al. (2016) · Molecular Ecology Resources · doi:10.1111/1755-0998.12633 · Cited by 15
“(2014), which could affect the placement of long branches (Lartillot et al. 2007; Prum et al. 2015).”
Background
The centrifugal visual system of a palaeognathous bird, the Chilean Tinamou (Nothoprocta perdicaria)
Krabichler, Q., Vega‐Zuniga, T., Carrasco, D., Fernández, M., Gutiérrez‐Ibáñez, C., Marin, G. J., & Luksch, H. (2017) · The Journal of Comparative Neurology · doi:10.1002/cne.24195 · Cited by 16
“In contrast to Neognathae, birds of the order Palaeognathae which comprises Struthioniformes (ostriches), Rheiformes (rheas), Tinamiformes (tinamous), Apterygiformes (kiwis), and Casuariiformes (cassowary and emu; Prum et al., 2015), seem to lack a proper ION (Craigie, 1930; Guti errez-Ib a~nez, Iwaniuk, Lisney, Faune…”
Background
Scaling and functional morphology in strigiform hind limbs
Madan, M. A., Rayfield, E. J., & Bright, J. A. (2017) · Scientific Reports · doi:10.1038/srep44920 · Cited by 17
Flightless rails (Aves: Rallidae) from the early Miocene St Bathans Fauna, Otago, New Zealand
Mather, E. K., Tennyson, A. J. D., Scofield, R. P., Pietri, V. L. D., Hand, S. J., Archer, M., Handley, W. D., & Worthy, T. H. (2018) · Journal of Systematic Palaeontology · doi:10.1080/14772019.2018.1432710 · Cited by 16
“2014a, b), form the group Ralloidea (Prum et al. 2015; Mayr 2017).”
BackgroundInfluential
Comparative morphology of the avian maxillary bone (os maxillare) based on an examination of macerated juvenile skeletons
Mayr, G. (2018) · Acta Zoologica · doi:10.1111/azo.12268 · Cited by 15
Aviisotricha hoazini n. gen., n. sp., the Morphology and Molecular Phylogeny of an Anaerobic Ciliate from the Crop of the Hoatzin (Opisthocomus hoazin), the Cow Among the Birds
Bardele, C. F., Schultheiß, S., Lynn, D. H., Wright, A. G., Domínguez-Bello, M. G., & Obispo, N. E. (2017) · Protist · doi:10.1016/j.protis.2017.02.002 · Cited by 15
“Prum et al. (2015) concluded that the hoatzin is among the most lineages of the Neoaves, diverging ~64 mya.”
Background
A remarkably complete skeleton from the London Clay provides insights into the morphology and diversity of early Eocene zygodactyl near-passerine birds
Mayr, G. (2020) · Journal of Systematic Palaeontology · doi:10.1080/14772019.2020.1862930 · Cited by 16
Karyotype Evolution and Genomic Organization of Repetitive DNAs in the Saffron Finch, Sicalis flaveola (Passeriformes, Aves)
Kretschmer, R., Rodrigues, B. S., Barcellos, S. A., Costa, A. L., Cioffi, M. D. B., Garnero, A. D. V., Gunski, R. J., de Oliveira, E. H. C., & Griffin, D. K. (2021) · Animals · doi:10.3390/ani11051456 · Cited by 14
The evolution of tinamous (Palaeognathae: Tinamidae) in light of molecular and combined analyses
Almeida, F. C., Porzecanski, A. L., Cracraft, J. L., & Bertelli, S. B. (2021) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlab080 · Cited by 14
Sexual monomorphism in wing loading and wing aspect ratio in Black Vulture (Coragyps atratus) and Turkey Vulture (Cathartes aura)
Graves, G. R. (2017) · Proceedings of the Biological Society of Washington · doi:10.2988/17-00018 · Cited by 14
Complex Gene Loss and Duplication Events Have Facilitated the Evolution of Multiple Loricrin Genes in Diverse Bird Species
Davis, A. C., Greenwold, M. J., & Sawyer, R. H. (2019) · Genome Biology and Evolution · doi:10.1093/gbe/evz054 · Cited by 14
Unexpected larger distribution of paleogene stem-rollers (AVES, CORACII): new evidence from the Eocene of Patagonia, Argentina
Degrange, F. J., Pol, D., Puerta, P., & Wilf, P. (2021) · Scientific Reports · doi:10.1038/s41598-020-80479-8 · Cited by 14
Sheathbill‐like birds (Charadriiformes: Chionoidea) from the Oligocene and Miocene of Australasia
Pietri, V. L. D., Scofield, R. P., Hand, S. J., Tennyson, A., & Worthy, T. H. (2016) · Journal of the Royal Society of New Zealand · doi:10.1080/03036758.2016.1194297 · Cited by 14
“Molecular divergence dates for this split have been estimated at 54 Ma (interval 66.6–41.5 Ma; Paton et al. 2003), but also at c. 80 Ma (Late Cretaceous; Baker et al. 2007, see however Mayr 2011).”
BackgroundInfluential
Cophylogenetic analysis of lice in theColpocephalumcomplex (Phthiraptera: Amblycera)
Catanach, T. A., Valim, M. P., Weckstein, J. D., & Johnson, K. P. (2017) · Zoologica Scripta · doi:10.1111/zsc.12262 · Cited by 14
A new extinct species of Polynesian sandpiper (Charadriiformes: Scolopacidae: Prosobonia ) from Henderson Island, Pitcairn Group, and the phylogenetic relationships of Prosobonia
Pietri, V. L. D., Worthy, T. H., Scofield, R. P., Cole, T. L., Wood, J. R., Mitchell, K. J., Cibois, A., Jansen, J. J. F. J., Cooper, A., Feng, S., et al. (2020) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlaa115 · Cited by 14
The Network Ontogeny of the Parrot: Altriciality, Dynamic Skeletal Assemblages, and the Avian Body Plan
Carril, J., Tambussi, C. P., & Rasskin‐Gutman, D. (2020) · Evolutionary Biology · doi:10.1007/s11692-020-09522-w · Cited by 16
15 years of introgression studies: quantifying gene flow across Eukaryotes
Dagilis, A. J., Peede, D., Coughlan, J. M., Jofre, G. I., D’Agostino, E. R. R., Mavengere, H., Tate, A. D., & Matute, D. R. (2021) · doi:10.1101/2021.06.15.448399 · Cited by 14
An Exceptionally Preserved Specimen From the Green River Formation Elucidates Complex Phenotypic Evolution in Gruiformes and Charadriiformes
Musser, G. M., & Clarke, J. A. (2020) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2020.559929 · Cited by 14
Mitogenomic analysis of extant condor species provides insight into the molecular evolution of vultures
Panis, D. N. D., Lambertucci, S. A., Wiemeyer, G. M., Dopazo, H., Almeida, F. C., Mazzoni, C. J., Gut, I. G., Gut, I. G., & Padró, J. (2021) · Scientific Reports · doi:10.1038/s41598-021-96080-6 · Cited by 13
Trait‐habitat associations explain novel bird assemblages mixing native and alien species across New Zealand landscapes
Barnagaud, J., Brockerhoff, E. G., Mossion, R. M., Dufour, P., Pavoine, S., Deconchat, M., & Barbaro, L. (2021) · Diversity and Distributions · doi:10.1111/ddi.13432 · Cited by 12
Metazoa‐level USCOs as markers in species delimitation and classification
Dietz, L., Mayer, C., Stolle, E., Eberle, J., Misof, B. Y., Podsiadłowski, L., Niehuis, O., & AHRENS, D. C. (2023) · Molecular Ecology Resources · doi:10.1111/1755-0998.13921 · Cited by 14
Phylogenomic and anatomical evidence for the Late Cretaceous diversification of African characiform fishes, including a new family, under the influence of the Trans-Saharan Seaway
de Melo, B. F., & Stiassny, M. L. J. (2024) · Evolutionary Journal of the Linnean Society · doi:10.1093/evolinnean/kzae030 · Cited by 13
Taxonomic review of the late Cenozoic megapodes (Galliformes: Megapodiidae) of Australia
Shute, E., Prideaux, G. J., & Worthy, T. H. (2017) · Royal Society Open Science · doi:10.1098/rsos.170233 · Cited by 14
“There is currently no pre-Late Oligocene fossil record for the Megapodiidae, despite recent estimates for the family’s divergence from other galliforms ranging from approximately 45 Ma in the Eocene [10] to as much as 70–75 Ma in the Late Cretaceous [4].”
Background
Tanopicobia gen. nov., a new genus of quill mites, its phylogenetic placement in the subfamily Picobiinae (Acariformes: Syringophilidae) and picobiine relationships with avian hosts
Skoracki, M., Sikora, B., Jerzak, L., & Hromada, M. (2020) · PLoS ONE · doi:10.1371/journal.pone.0225982 · Cited by 13
Phylogeography, Species Limits, Phylogeny, and Classification of the Turacos (Aves: Musophagidae) Based on Mitochondrial and Nuclear DNA Sequences
Perktaş, U., Groth, J. G., & Barrowclough, G. F. (2020) · American Museum Novitates · doi:10.1206/3949.1 · Cited by 13
Disparate origins for endemic bird taxa from the ‘Gondwana Rainforests’ of Central Eastern Australia
Mitchell, K. J., Hugall, A. F., Heiniger, H., Joseph, L., & Oliver, P. M. (2021) · Biological Journal of the Linnean Society · doi:10.1093/biolinnean/blab031 · Cited by 15
“Convergence of parameter values was monitored using tracer v.1.6 (Rambaut & Drummond, 2014), ensuring an Effective Sample Size (ESS) > 200.”
MethodInfluential
A new, undescribed species of Melanocharis berrypecker from western New Guinea and the evolutionary history of the family Melanocharitidae
Milá, B., Bruxaux, J., Friis, G., Sam, K., Ashari, H., & Thébaud, C. (2021) · Ibis · doi:10.1111/ibi.12981 · Cited by 13
Circulatory changes associated with the closure of the ductus arteriosus in hatching emu (Dromaius novaehollandiae)
Shell, L., Burggren, W. W., Muirhead, D. E., Nelson, T. C., & Dzialowski, E. M. (2015) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2015.11.006 · Cited by 13
“Emu belong to Palaeognathae, among the most primitive clades of birds (Prum et al., 2015) and when compared with other birds and mammals can provide an understanding of potentially conserved developmental morphological and physiological phenotypes in vertebrate lineages.”
Background
GASTRIC PELLETS WITH BIRD REMAINS FROM THE EARLY EOCENE OF MESSEL
Mayr, G., & Schaal, S. F. K. (2016) · Palaios · doi:10.2110/palo.2016.042 · Cited by 13
“Almost certainly, however, the stem species of owls was a diurnal bird because Strigiformes are phylogenetically nested amongst diurnal avian higher-level clades (e.g., Prum et al. 2015).”
Background
Delayed neurogenesis with respect to eye growth shapes the pigeon retina for high visual acuity
Rodrigues, T., Krawczyk, M., Skowronska‐Krawczyk, D., Matter-Sadzinski, L., & Matter, J. (2016) · Development · doi:10.1242/dev.138719 · Cited by 13
“Phylogenomic studies indicate that one node at the base of the avian tree splits the neognaths between the Galloanserae (e.g. chicken) and the Neonaves, which regroup 95% of avian species and include the orders Columbiformes (e.g. pigeon) and Passeriformes (Hackett et al., 2008; Prum et al., 2015).”
Background
DNA barcoding of bird species in Cyprus: a tool for conservation purposes
Dimitriou, A. C., Forcina, G., Papazoglou, C., Panayides, P., Guerrini, M., CRABTREE, A., Barbanera, F., & Sfenthourakis, S. (2017) · Bird Conservation International · doi:10.1017/s0959270916000472 · Cited by 14
Multiple origins of secondary temporal fenestrae and orbitozygomatic junctions in birds
Elżanowski, A., & Mayr, G. (2017) · Journal of Zoological Systematics & Evolutionary Research · doi:10.1111/jzs.12196 · Cited by 13
Parrots move to centre stage in conservation and evolution
Heinsohn, R., Buchanan, K. L., & Joseph, L. (2018) · Emu - Austral Ornithology · doi:10.1080/01584197.2018.1411223 · Cited by 13
“The sister relationship between parrots and passerines, together with shared ancestry with falcons, has since been confirmed repeatedly (McCormack et al. 2013; Jarvis et al. 2014; Prum et al. 2015).”
Background
Hypotarsus Morphology of the Ralloidea Supports a Clade Comprising Sarothrura and Mentocrex to the Exclusion of Canirallus
Mayr, G. (2019) · Acta Ornithologica · doi:10.3161/00016454ao2019.54.1.005 · Cited by 14
On the taxonomy and osteology of the Early Eocene North American Geranoididae (Aves, Gruoidea)
Mayr, G. (2016) · Swiss Journal of Palaeontology · doi:10.1007/s13358-016-0117-2 · Cited by 13
“1h, i, 3h), but the polarity of this feature is uncertain, because a short trochlea metatarsi II also occurs in many Ralloidea, which are the sister taxon of the Gruoidea (e.g., Ericson et al. 2006; Prum et al. 2015), as well as in the extinct Parvigruidae, which are another group of stem group Gruoidea (Mayr 2013 and…”
Background
Mitogenomes of Accipitriformes and Cathartiformes Were Subjected to Ancestral and Recent Duplications Followed by Gradual Degeneration
Urantówka, A. D., Kroczak, A., Strzała, T., Zaniewicz, G., Kurkowski, M., & Mackiewicz, P. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab193 · Cited by 12
Insights into avian molecular cytogenetics—with reptilian comparisons
Griffin, D. K., Kretschmer, R., Srikulnath, K., Singchat, W., O’Connor, R. E., & Romanov, M. N. (2024) · Molecular Cytogenetics · doi:10.1186/s13039-024-00696-y · Cited by 14
An avian explosion
Thomas, G. H. (2015) · Nature · doi:10.1038/nature15638 · Cited by 12
How does the curvature of the upper beak bone reflect the overlying rhinotheca morphology?
Urano, Y., Tanoue, K., Matsumoto, R., Kawabe, S., Ohashi, T., & Fujiwara, S. (2018) · Journal of Morphology · doi:10.1002/jmor.20799 · Cited by 14
Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation
Kolchanova, S. M., Kliver, S. F., Komissarov, A. S., Dobrinin, P., Tamazian, G., Grigorev, K. A., Wolfsberger, W., Majeske, A. J., Vélez‐Valentín, J., Valentin, R., et al. (2019) · Genes · doi:10.3390/genes10010054 · Cited by 12
“Other, more recent and robustly supported independent phylogenomic analyses [3,19,20], as well as fossil evidence [21,22], support post-Gondwana divergence of stem Psittaciformes from Psittacopasseres between 55–60 Mya.”
Result
The Skull and Head Muscles of Archosauria
Smith‐Paredes, D., & Bhullar, B.-A. S. (2019) · Fascinating life sciences · doi:10.1007/978-3-319-93560-7_10 · Cited by 13
Estimating egg mass–body mass relationships in birds
Rotenberry, J. T., & Balasubramaniam, P. (2020) · The Auk · doi:10.1093/auk/ukaa019 · Cited by 11
A partial skeleton of a new species of Tynskya Mayr, 2000 (Aves, Messelasturidae) from the London Clay highlights the osteological distinctness of a poorly known early Eocene “owl/parrot mosaic”
Mayr, G. (2021) · Paläontologische Zeitschrift · doi:10.1007/s12542-020-00541-8 · Cited by 13
“However, well-resolved and congruent molecular phylogenies now provide a robust framework for the placement of psittaciform, falconiform, accipitriform, and strigiform birds, which are only distantly related (Ericson et al. 2006; Hackett et al. 2008; Jarvis et al. 2014; Prum et al. 2015; Kuhl et al. 2021).”
Background
Characterization of the complete mitochondrial genome of Otus lettia: exploring the mitochondrial evolution and phylogeny of owls (Strigiformes)
Yu, J., Liu, J., Li, C., Wu, W., Feng, F., Wang, Q., Ying, X., Qi, D., & Qi, G. (2021) · Mitochondrial DNA Part B · doi:10.1080/23802359.2021.1995517 · Cited by 12
Catalogue of the birds of the province of Murcia (Spain)
Calvo, J. F., Hernández‐Navarro, A. J., Robledano, F., Selma, M. Á. E., Ballesteros, G., Fuentes, A., García-Castellano, F. A., González-Revelles, C., Guardiola, Á., Hernández, V., et al. (2017) · Anales de Biología · doi:10.6018/analesbio.39.02 · Cited by 11
A workflow of massive identification and application of intron markers using snakes as a model
Li, J., He, C. Z., Guo, P., Zhang, P., & Liang, D. (2017) · Ecology and Evolution · doi:10.1002/ece3.3525 · Cited by 12
“…of the sequence capture approach is well known, which can simultaneously produce hundreds to thousands of loci for tens of individuals within a relatively short time and can be very cost-effective (Faircloth et al., 2012; Lemmon, Emme, & Lemmon, 2012; McCormack et al., 2012; Prum et al., 2015).”
A systematic reappraisal of the Rufous Potoo Nyctibius bracteatus (Nyctibiidae) and description of a new genus
da Costa, T. V. V., Whitne, B. M., Braun, M. J., White, N. D., Silveira, L. F., & Cleere, N. (2017) · Journal für Ornithologie · doi:10.1007/s10336-017-1511-2 · Cited by 12
“Genome-based phylogenetic data suggest that the “caprimulgiform” radiation dates back to the early Paleocene (Jarvis et al. 2014; Prum et al. 2015), and the oldest known Nyctibiidae fossils date back to the middle Eocene (Mayr 1999), indicating that the extant species may represent ancient phylogenetic splits.”
Influential
A New Morphological Dataset Reveals a Novel Relationship for the Adzebills of New Zealand (Aptornis) and Provides a Foundation for Total Evidence Neoavian Phylogenetics
Musser, G. M., & Cracraft, J. L. (2019) · American Museum Novitates · doi:10.1206/3927.1 · Cited by 11
A Multireference-Based Whole Genome Assembly for the Obligate Ant-Following Antbird, Rhegmatorhina melanosticta (Thamnophilidae)
Coelho, L. A., Musher, L. J., & Cracraft, J. L. (2019) · Diversity · doi:10.3390/d11090144 · Cited by 9
Does solar irradiation drive community assembly of vulture plumage microbiotas?
Graves, G. R., Matterson, K. O., Milensky, C. M., Schmidt, B. K., O’Mahoney, M. J. V., & Drovetski, S. V. (2020) · Animal Microbiome · doi:10.1186/s42523-020-00043-7 · Cited by 11
MLH1 focus mapping in the guinea fowl (Numida meleagris) give insights into the crossover landscapes in birds
del Priore, L., & Pigozzi, M. I. (2020) · PLoS ONE · doi:10.1371/journal.pone.0240245 · Cited by 11
Differential post-fledging habitat use of Nearctic-Neotropical migratory birds within an urbanized landscape
Ladin, Z. S., Nieuland, S. V., Adalsteinsson, S. A., D’Amico, V., Bowman, J. L., Buler, J. J., Baetens, J. M., Bernard De Baets, C., & Shriver, W. G. (2018) · Movement Ecology · doi:10.1186/s40462-018-0132-6 · Cited by 10
Can skeletal surface area predictin vivofoot surface area?
Strickson, E. C., Hutchinson, J. R., Wilkinson, D. M., & Falkingham, P. L. (2019) · Journal of Anatomy · doi:10.1111/joa.13090 · Cited by 12
An early Eocene fossil from the British London Clay elucidates the evolutionary history of the enigmatic Archaeotrogonidae (Aves, Strisores)
Mayr, G. (2021) · Papers in Palaeontology · doi:10.1002/spp2.1392 · Cited by 14
The critically endangered forest owlet Heteroglaux blewitti is nested within the currently recognized Athene clade: A century-old debate addressed
Koparde, P., Mehta, P., Reddy, S., Ramakrishnan, U., Mukherjee, S., & Robin, V. V. (2018) · PLoS ONE · doi:10.1371/journal.pone.0192359 · Cited by 11
Phylogenetic relationships of rollers (Coraciidae) based on complete mitochondrial genomes and fifteen nuclear genes
Johansson, U. S., Irestedt, M., Qu, Y., & Ericson, P. G. P. (2018) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2018.03.030 · Cited by 12
Assessing topological congruence among concatenation-based phylogenomic approaches in empirical datasets
Torres, A., Goloboff, P. A., & Catalano, S. A. (2021) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2021.107086 · Cited by 11
Quantitative Analysis of Morphometric Data of Pre-modern Birds: Phylogenetic Versus Ecological Signal
Bell, A., Marugán‐Lobón, J., Navalón, G., Nebreda, S. M., DiGuildo, J., & Chiappe, L. M. (2021) · Frontiers in Earth Science · doi:10.3389/feart.2021.663342 · Cited by 11
“Some phylogenetic analyses place these birds in a clade with Charadriiformes called Aequorlitornithes (e.g., Prum et al., 2015), and so it is unsurprizing that are the most allometrically distinct with regard to interlimb scaling proportions ( Figure 5 ; Supplemental Tables S2 and S3 ).”
Background
Behaviour of cranes (family Gruidae) mirrors their phylogenetic relationships
Nováková, N., & Robovský, J. (2021) · Avian Research · doi:10.1186/s40657-021-00275-4 · Cited by 11
The link between avian brachial index, flight capability and the neornithine evolutionary radiation
Karoullas, C., & Nudds, R. L. (2021) · Journal of Morphology · doi:10.1002/jmor.21414 · Cited by 11
“Consequently, a composite tree with the genus-level resolution of the tree produced by Jetz et al. (2018) but with the branching topology and age estimates of the tree produced by Prum et al. (2015) was created according to the methods described by Cooney et al. (2017).”
BackgroundMethodResultInfluential
Systematics of the Saharo‐Arabian clade of the Palearctic naked‐toed geckos with the description of a new species of Tropiocolotes endemic to Oman
Machado, L., Šmı́d, J., Mazuch, T., Sindaco, R., Shukaili, A. S. A., & Carranza, S. (2018) · Journal of Zoological Systematics & Evolutionary Research · doi:10.1111/jzs.12226 · Cited by 12
Blood parasites infecting the Hoatzin ( Opisthocomus hoazin ), a unique neotropical folivorous bird
Pacheco, M. A., García-Amado, M. A., Manzano, J., Matta, N. E., & Escalante, A. A. (2019) · PeerJ · doi:10.7717/peerj.6361 · Cited by 13
Assessing phylogenetic information to reveal uncertainty in historical data: An example using Goodeinae (Teleostei: Cyprinodontiformes: Goodeidae)
Parker, E., Dornburg, A., Domínguez‐Domínguez, O., & Piller, K. R. (2019) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2019.01.025 · Cited by 11
Self-citation
Elevated Heterozygosity in Adults Relative to Juveniles Provides Evidence of Viability Selection on Eagles and Falcons
Doyle, J. M., Willoughby, J. R., Bell, D. A., Bloom, P. H., Bragin, E. A., Fernández, N. B., Katzner, T. E., Leonard, K., & DeWoody, J. A. (2019) · Journal of Heredity · doi:10.1093/jhered/esz048 · Cited by 12
Comparing the toepads of Australian diurnal and nocturnal raptors with nonpredatory taxa: Insights into functional morphology
Tsang, L. R., Wilson, L. A. B., & McDonald, P. G. (2019) · Journal of Morphology · doi:10.1002/jmor.21057 · Cited by 11
Identifying model violations under the multispecies coalescent model using P2C2M.SNAPP
Duckett, D. J., Pelletier, T. A., & Carstens, B. C. (2020) · PeerJ · doi:10.7717/peerj.8271 · Cited by 10
“…(i.e., incomplete lineage sorting) commonly occur at shallow levels of phylogenetic divergence, species trees have largely (but not exclusively; Prum et al., 2015) been applied near the species boundary, and often in clades where species limits are not entirely clear (Satler, Carstens & Hedin,…”
Background
A morphometric analysis of the lungs of high‐altitude ducks and geese
Bakkeren, C., Smith, E., York, J. M., Chua, B., McCracken, K. G., & Milsom, W. K. (2020) · Journal of Anatomy · doi:10.1111/joa.13180 · Cited by 11
Composition and Diversity of Over-Wintering Aquatic Bird Community on Poyang Lake, China
Debela, M. T., Wu, Q., Chen, L., Sun, X., Xu, Z., & Li, Z. (2020) · Diversity · doi:10.3390/d12080308 · Cited by 11
Gene tree quality affects empirical coalescent branch length estimation
Forthman, M., Braun, E. L., & Kimball, R. T. (2021) · Zoologica Scripta · doi:10.1111/zsc.12512 · Cited by 9
Size and number of the hypoglossal nerve foramina in the avian skull and their potential neuroanatomical significance
Mayr, G. (2017) · Journal of Morphology · doi:10.1002/jmor.20770 · Cited by 11
“…pattern (Figure 1c), whereas in Psophiidae and Rallidae (Figure 2e) there are 2 or 3 FNH. Phoenicopteriformes have 4–5 FNH that are strung together in a line (Figure 2c), but Podicipediformes, their sister taxon (e.g., Prum et al., 2015), exhibit 2–3 (Tachybaptus; Figure 2b), or 3–4 (Podiceps) FNH.”
BackgroundInfluential
New Genus and Two New Species of Chewing Lice from Southeast Asian Trogons (Aves: Trogoniformes), with a Revised Key to the Philopterus-complex
Gustafsson, D. R., Lei, L., Chu, X., Zou, F., & Bush, S. E. (2019) · Acta Parasitologica · doi:10.2478/s11686-018-00011-x · Cited by 10
Extensive in situ radiation of feather lice on tinamous
Herrera, S. V., Sweet, A. D., Allen, J. M., Walden, K. K. O., Weckstein, J. D., & Johnson, K. P. (2020) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2019.3005 · Cited by 10
In silico phylogenomics using complete genomes: a case study on the evolution of hominoidsPreprint
Costa, I., Prosdocimi, F., & Jennings, W. B. (2016) · Genome Research · doi:10.1101/gr.203950.115 · Cited by 11
“The era of using genome-scale data to reconstruct the evolutionary history of organismal groups has recently begun (Alföldi et al. 2011; Faircloth et al. 2012; Lemmon and Lemmon 2012; Lemmon et al. 2012; McCormack et al. 2012; Jarvis et al. 2014; Prum et al. 2015).”
Phylogenomic Analysis of Ants, Bees and Stinging Wasps: Improved Taxon Sampling Enhances Understanding of Hymenopteran EvolutionPreprint
Branstetter, M. G., Danforth, B. N., Pitts, J. P., Faircloth, B. C., Ward, P. S., Buffington, M. L., Gates, M. W., Kula, R. R., & Brady, S. G. (2016) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/068957 · Cited by 14
Feather-Eating In Grebes: A 500-Year Conundrum
Jehl, J. R. (2017) · The Wilson Journal of Ornithology · doi:10.1676/16-196.1 · Cited by 10
A fossil heron from the early Oligocene of Belgium: the earliest temporally well‐constrained record of the Ardeidae
Mayr, G., Pietri, V. L. D., Scofield, R. P., & Smith, T. (2018) · Ibis · doi:10.1111/ibi.12600 · Cited by 10
Behavioral correlates of semi-zygodactyly in Ospreys ( Pandion haliaetus ) based on analysis of internet images
Sustaita, D., Gloumakov, Y., Tsang, L. R., & Dollar, A. M. (2019) · PeerJ · doi:10.7717/peerj.6243 · Cited by 11
Biologia Futura: rapid diversification and behavioural adaptation of birds in response to Oligocene–Miocene climatic conditions
Nagy, J. (2020) · Biologia Futura · doi:10.1007/s42977-020-00013-9 · Cited by 11
Autosomal, sex-linked and mitochondrial loci resolve evolutionary relationships among wrens in the genus Campylorhynchus
Vázquez‐Miranda, H., & Barker, F. K. (2021) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2021.107242 · Cited by 9
A partial skeleton of Septencoracias from the early Eocene London Clay reveals derived features of bee-eaters (Meropidae) in a putative stem group roller (Aves, Coracii)
Mayr, G. (2021) · Palaeobiodiversity and Palaeoenvironments · doi:10.1007/s12549-021-00504-0 · Cited by 11
“However, the latter four taxa were traditionally often assigned to a clade Alcediniformes (e.g. Feduccia 1977; Mayr 1998), whereas current molecular analyses suggest a sister group relationship between the Meropidae and the Coracii, with the Alcedinides (Alcedinidae, Momotidae, Todidae) being the sister taxon of the c…”
Waterbird solves the string-pull test
Lamarre, J., & Wilson, D. R. (2021) · Royal Society Open Science · doi:10.1098/rsos.211343 · Cited by 10
Domestication and the comparative embryology of birds
Cordero, G. A., & Werneburg, I. (2022) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.23144 · Cited by 12
Tracing the evolution of novel features of human Toll‐like receptor 4
Anderson, J. A., Loes, A. N., Waddell, G. L., & Harms, M. J. (2019) · Protein Science · doi:10.1002/pro.3644 · Cited by 11
Analysis of skull morphometric characters in diurnal raptors (Accipitriformes and Falconiformes)
Pecsics, T., Laczi, M., Nagy, G., Kondor, T., & Csörgő, T. (2019) · Ornis Hungarica · doi:10.2478/orhu-2019-0008 · Cited by 10
Experimental study of alarm calls of the oriental tit ( Parus minor ) toward different predators and reactions they induce in nestlings
Ha, J., Lee, K., Yang, E.-J., Kim, W., Song, H., Hwang, I., Lee‐Cruz, L., Lee, S., & Jablonski, P. G. (2020) · Ethology · doi:10.1111/eth.13012 · Cited by 10
Phylogenetic Analysis and Karyotype Evolution in Two Species of Core Gruiformes: Aramides cajaneus and Psophia viridis
Furo, I. D. O., Kretschmer, R., O’Brien, P. C. M., Pereira, J. C., Ferguson-Smith, M. A., & de Oliveira, E. H. C. (2020) · Genes · doi:10.3390/genes11030307 · Cited by 10
Evidence of Late Miocene Peri-Tibetan Aridification From the Oldest Asian Species of Sandgrouse (Aves: Pteroclidae)
Li, Z., Stidham, T. A., Deng, T., & Zhou, Z. (2020) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2020.00059 · Cited by 9
The First Fossil Tody (Aves: Todidae) from Cuba
Владимирович, З. Н., & González, S. F. (2020) · Paleontological Journal · doi:10.1134/s0031030120040164 · Cited by 10
First Report of Fecal Microflora of Wild Bar-Headed Goose in Tibet Plateau
Dong, S., Xu, S., Zhang, J., Hussain, R., Lu, H., Ye, Y., Mehmood, K., Zhang, H., & Shang, P. (2022) · Frontiers in Veterinary Science · doi:10.3389/fvets.2021.791461 · Cited by 10
“Among vertebrates, birds are considered to be the most common and diverse on earth, with more than 10,000 living species (6).”
Background
Immunohistochemical characterization of bipolar cells in four distantly related avian species
Balaji, V., Haverkamp, S., Seth, P. K., Günther, A., Mendoza, E., Schmidt, J., Herrmann, M., Pfeiffer, L. L., Němec, P., Scharff, C., et al. (2022) · The Journal of Comparative Neurology · doi:10.1002/cne.25443 · Cited by 10
Late Miocene rails (Aves: Rallidae) from southwestern Russia
Владимирович, З. Н., Валентинович, П. А., & Pietri, V. L. D. (2017) · Palaeobiodiversity and Palaeoenvironments · doi:10.1007/s12549-017-0276-1 · Cited by 10
Functional morphology of the cranio‐mandibular complex of the Guira cuckoo (Aves)
Pestoni, S., Degrange, F. J., Tambussi, C. P., Ferreira, M. M. D., & Tirao, G. A. (2018) · Journal of Morphology · doi:10.1002/jmor.20810 · Cited by 10
“Although recent molecular studies suggest an affinity with bustards (Prum et al., 2015), its phylogenetic relationship with other birds is still the subject of discussion (Hughes, 2000; Mayr, Manegold, & Johansson, 2003; Sibley & Ahlquist, 1990).”
Background

Authors: Prum, R. O., Berv, J. S., Dornburg, A., Field, D. J., Townsend, J. P., Lemmon, E. M., & Lemmon, A. R.
Affiliations: Yale University (US)
ORCID: Prum, Richard O.
Berv, Jacob S.
Dornburg, Alex
Field, Daniel J.
Townsend, Jeffrey P.
Lemmon, Emily Moriarty
Lemmon, Alan R.
Venue: Nature
Publisher: Springer Science and Business Media LLC
Published: 2016-06
Volume: 534
Issue: 7607
Pages: S7-S8
ISSN: 0028-0836 (ISSN-L)
1476-4687
DOI: 10.1038/nature19417
OpenAlex: W4231969088
Cited by: 928
References: 7
Citations by year: 2026: 1 · 2025: 4 · 2024: 6 · 2023: 13 · 2022: 10 · 2021: 152 · 2020: 170 · 2019: 159 · 2018: 147 · 2017: 164 · 2016: 94
FWCI: 156.34
Type: journal article
Language: en
Open access: closed
Licence: www.springer.com/tdm (tdm)
Locations: Nature (publishedVersion)
Topics: Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Evolutionary Biology
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Keywords: avian phylogeny, Neoaves, anchored hybrid enrichment, nuclear loci, avian evolution, hoatzin, waterbirds, landbirds, divergence time estimation, dinosaur systematics

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