Using the transcriptome to annotate the genome

Cited by (634)

Items 401–500 of 634

  1. Robust-LongSAGE (RL-SAGE)
    Malali Gowda, Guo‐Liang Wang · 2008 · Methods in molecular biology
  2. DeepSAGE: Tag‐Based Transcriptome Analysis Beyond Microarrays
    Kåre Lehmann Nielsen, Annabeth Høgh Petersen, Jeppe Emmersen · 2008
  3. Analysis of mRNA With Microsomal Fractionation Using a SAGE-Based DNA Microarray System Facilitates Identification of the Genes Encoding Secretory Proteins
    Nobuaki Toyoda, Shigenori Nagai, Yuya Terashima, Kazushi Motomura, Makoto Haino, Shin-ichi Hashimoto, Hajime Takizawa, Kouji Matsushima · 2003 · Genome Research
  4. A high throughput messenger RNA differential display screen identifies discrete domains of gene expression and novel patterning processes along the developing neural tube
    David Chambers, Ivor J. Mason · 2006 · BMC Developmental Biology
  5. Modified PCR methods for 3′ end amplification from serial analysis of gene expression (SAGE) tags
    Wangjie Xu, Zhaoxia Wang, Zhongdong Qiao · 2009 · FEBS Journal
  6. Functional genomics: applications to production agriculture.
    Teresia M. Buza, Fiona McCarthy · 2014 · CABI Reviews
  7. The Analyses of Global Gene Expression and Transcription Factor Regulation
    Raquel Cuevas‐Díaz Durán, Sudheer Menon, Jiaqian Wu · 2015 · Translational bioinformatics
  8. Nucleotide Substitution Models and Evolutionary Distances
    Xuhua Xia · 2018 · Springer eBooks
  9. ENST00000489707.5 Is a Preferred Alternative Splicing Variant of PTK7 in Adrenocortical Cancer and Shows Potential Prognostic Value
    Jun Bie, Kang Liu, Guiqin Song, Xin Hu, Rong Xiong, Xinping Zhang, Xianwei Shi, Ziwei Wang · 2019 · Medical Science Monitor
  10. Using LongSAGE to Detect Biomarkers of Cervical Cancer Potentially Amenable to Optical Contrast Agent Labelling
    Julie M. Kneller, Thomas G. Ehlen, Jasenka Matisic, Dianne M. Miller, Dirk van Niekerk, Wan L. Lam, Marco A. Marra, Rebecca Rae Richards-Kortum, Michelle Follen, Calum E. MacAulay et al. · 2007 · Biomarker Insights
  11. New Technologies Used in the Study of Human Melanoma
    Armando Felsani, Anna Maria Mileo, Vittoria Maresca, Mauro Picardo, Marco Giorgio Paggi · 2007 · International review of cytology
  12. High-throughput assay of DNA methylation based on methylation-specific primer and SAGE
    Xianliang Wang, Chi Zhang, Lijun Zhang, Xiaoli Wang, Shunqing Xu · 2006 · Biochemical and Biophysical Research Communications
  13. iGentifier: indexing and large-scale profiling of unknown transcriptomes
    Achim Fischer, Alistair Lenhard, Heike Tronecker, Yvonne Lorat, Marcel Kränzle, Oliver Sorgenfrei, Tim Zeppenfeld, Michael Haushalter, Gerhard Vogt, Ulrich Gruene et al. · 2007 · Nucleic Acids Research
  14. START: an automated tool for serial analysis of chromatin occupancy data
    Voichita Dana Marinescu, Isaac S. Kohane, Tae-Kyung Kim, David A. Harmin, Michael E. Greenberg, Alberto Riva · 2006 · Bioinformatics
  15. Identification of candidate mRNAs associated with gonadotropin-induced maturation of murine cumulus oocyte complexes using serial analysis of gene expression
    Karina F. Rodriguez, Le Ann Blomberg, K. A. Zuelke, Jeremy R. Miles, Joseph E. Alexander, Charlotte E. Farin · 2006 · Physiological Genomics
  16. Exploratory analysis of cancer SAGE data
    Martinez, Ricardo, Richard Christen, Claude Pasquier, Nicolas Pasquier D · 2005 · HAL
  17. Genome-Wide RNA Expression Profiling in Rice
    Shoshi Kikuchi, Guo‐Liang Wang, Lei Li · 2007 · Springer eBooks
  18. ROLL: A Method of Preparation of Gene-Specific Oligonucleotide Libraries
    Alexander V. Vlassov, Olga A. Koval, Brian H. Johnston, Sergei A. Kazakov · 2004 · Oligonucleotides
  19. Analyzing Transcriptome-Phenotype Correlations
    Bryan T. Li, Jin X. Lim, Maurice HT Ling · 2018 · Elsevier eBooks
  20. Progress on the Transcriptome Analysis of Medicinal Plants with Next‐Generation Sequencing Technologies
    Hongmei Luo, Shilin Chen · 2019 · Wiley eBooks
  21. Serial Analysis of Gene Expression (SAGE): a useful tool to analyze the cardiac transcriptome.
    Kirill V. Tarasov, Sheryl A. Brugh, Yelena S. Tarasova, Kenneth R. Boheler · 2007 · PubMed
  22. The Mouse Genome
    M ADAMS · 2007 · Elsevier eBooks
  23. RNA Biomarkers in Schizophrenia
    Daniel Martins‐de‐Souza, Emmanuel Dias‐Neto · 2008 · Springer eBooks
  24. cDNA representational difference analysis for identifying transcripts regulated under anhydrobiosis in the tardigrade Milnesium tardigradum
    Markus A. Grohme, Brahim Mali, Ralph O. Schill, Marcus Frohme · 2011 · Journal of Zoological Systematics & Evolutionary Research
  25. Use of Serial Analysis of Gene Expression (Sage) for Transcript Profiling in Plants
    Prakash Chand Sharma, Hideo Matsumura, Ryohei Terauchi · 2007 · Springer eBooks
  26. Multivariate analysis of digital gene expression profiles identifies a xylem signature of the vascular tissue of white spruce (Picea glauca)
    Rokneddin Mohammad Albouyeh, Nima Farzaneh, Jörg Bohlmann, Kermit Ritland · 2010 · Tree Genetics & Genomes
  27. Methods of searching for markers for serological serum diagnosis of tumors
    Ю А Букурова, George Sergeevich Krasnov, И. Г. Никитина, В. Л. Карпов, Nikolai A. Lisitsyn, S. F. Beresten · 2013 · Molecular Biology
  28. Strategies for Human Tumor Virus Discoveries: From Microscopic Observation to Digital Transcriptome Subtraction
    Ezra D. Mirvish, Masahiro Shuda · 2016 · Frontiers in Microbiology
  29. Tiling Array技术与应用研究进展
    俊 王, 学斌 迟, 显宇 郎 · 2008 · Chinese Science Bulletin (Chinese Version)
  30. Sequence Based Gene Expression Analysis
    Lakshmi K. Matukumalli, Steven Schroeder · 2009 · Springer eBooks
  31. Semi‐nested PCR analysis of unknown tags on serial analysis of gene expression
    Wangjie Xu, Qiaoli Li, Chenjiang Yao, Zhaoxia Wang, Yangxing Zhao, Zhongdong Qiao · 2008 · FEBS Journal
  32. The research progress of tiling array technology and applications
    Xian-Yu Lang, Jun Wang, Xuebin Chi · 2008 · 中国科学通报:英文版
  33. Genomic technologies and the interrogation of the transcriptome
    Edison T. Liu · 2004 · Mechanisms of Ageing and Development
  34. Microarrays, antiobesity and the liver
    Fernando Castro-Chávez · 2004 · Annals of Hepatology
  35. A modified GLGI method for identification of novel porcine genes from long serial analysis of gene expression tags
    Tang Zhong-lin, Yong Li, Zhao Shuhong, Liu Bang, Fan Bin, Kui Li · 2007 · Chinese Journal of Agricultural Biotechnology
  36. SAGE Analysis to Identify Embryonic Stem Cell-Predominant Transcripts
    Kenneth R. Boheler, Kirill V. Tarasov · 2006 · Humana Press eBooks
  37. Manual Microdissection Combined with Antisense RNA–LongSAGE for the Analysis of Limited Cell Numbers
    Jütta Lüttges, Stephan A. Hahn, Anna M. Heidenblut · 2009 · Methods in molecular biology
  38. Genetic Engineering in Potato Improvement
    Elena Rákosy-Tican · 2013 · CRC Press eBooks
  39. GeneChips in Regenerative Medicine
    Jason Hipp, Anthony Atala · 2008 · Elsevier eBooks
  40. Recent Advances in OMICS Technologies
    Vikas Gupta, Satish Kumar V, Disha Kamboj, Chandra Nath Mishra, Charan Singh, Gyanendra Pratap Singh, Gyanendra Pratap Singh · 2021 · Springer eBooks
  41. GeneChips in Stem Cell Research
    Jason Hipp, Anthony Atala · 2006 · Methods in enzymology on CD-ROM/Methods in enzymology
  42. DeepSuperSAGE: High‐Throughput Transcriptome Sequencing with Now‐ and Next‐Generation Sequencing Technologies
    Hideo Matsumura, Carlos Molina, Detlev H. Krüger, Ryohei Terauchi, Günter Kahl · 2011 · Wiley eBooks
  43. Serial Analysis of Gene Expression (SAGE) in Cancer Research
    C. Marcelo Aldaz · 2003
  44. Serial Analysis of Gene Expression
    Jacques Marti, Jean‐Marc Elalouf · 2006 · Encyclopedia of Molecular Cell Biology and Molecular Medicine
  45. Consistent production of cost-effective longSAGE libraries
    Allison C Crawford, Jessica F White, Peter C Bundock, Giovanni M Cordeiro, Shane R. McIntosh, Toni Pacey‐Miller, Lee Rooke, Robert James Henry · 2005 · Plant Molecular Biology Reporter
  46. Applying the SAGE technique to study the effects of electromagnetic field on biological systems
    San Ming Wang · 2006 · PROTEOMICS
  47. An analysis of salmonid RNA sequences and implications for salmonid evolution
    Gordon D. Brown · 2008 · UVic’s Research and Learning Repository (University of Victoria)
  48. Functions of AHR-1 and CYP-35A subfamily genes in caenorhabditis elegans
    Vuokko Aarnio · 2014 · UEF eRepo (University of Eastern Finland)
  49. Transcriptomics
    Carolina Munari Rodrigues, Valéria Mafra, Marcos Antônio Machado · 2014 · Wiley eBooks
  50. FUNCTIONAL GENOMICS OF STRESS TOLERANCE
    Akhilesh Kumar Tyagi, Shubha Vij, Navinder Saini · 2006 · Springer eBooks
  51. Bioinformatics and Translation Initiation
    Xuhua Xia · 2018 · Springer eBooks
  52. Transcriptomics and RNA-Seq Data Analysis
    Xuhua Xia · 2018 · Springer eBooks
  53. A simultaneous space sampling method for DNA fraction collection using a comb structure in microfluidic devices
    Zheyu Li, Kai Sun, Misato Sunayama, Ryoko Araki, Kosei Ueno, Masumi Abe, Hiroaki Misawa · 2011 · Electrophoresis
  54. Global identification of transcription start sites in the genome of Apis mellifera using 5′LongSAGE
    Huajun Zheng, Liangxian Sun, Wenjun Peng, Yan Shen, Yuezhu Wang, Baohua Xu, Wenyi Gu, Shuting Chen, Zhouying Huang, Shengyue Wang · 2011 · Journal of Experimental Zoology Part B Molecular and Developmental Evolution
  55. Gene expression measurement technologies: innovations and ethical considerations
    Jessica R. Goodkind, Jeremy S. Edwards · 2004 · Computers & Chemical Engineering
  56. Analysis of a novel protein in human colorectal adenocarcinoma
    Kaicheng Wang, Chen Yao · 2013 · Molecular Medicine Reports
  57. Protein Isoelectric Point and Helicobacter pylori
    Xuhua Xia · 2018 · Springer eBooks
  58. Vitis Functional Genomics: Open Systems for Transcriptome Analysis
    2011 · CRC Press eBooks
  59. Minimizing loss of sequence information in SAGE ditags by modulating the temperature dependent 3′ → 5′ exonuclease activity of DNA polymerases on 3′‐terminal isoheptyl amino groups
    Austin P. So, Robin F. B. Turner, Charles A. Haynes · 2006 · Biotechnology and Bioengineering
  60. Novel expressed sequences identified in a model of androgen independent prostate cancer
    Steven N. Quayle, Heidi Hare, Allen D. Delaney, Martin Hirst, Dorothy Hwang, Jacqueline E. Schein, Steven J.M. Jones, Marco A. Marra, Marianne D. Sadar · 2007 · BMC Genomics
  61. Computational methods for analysis and modeling of time-course gene expression data
    Fang‐Xiang Wu · 2004 · University Library - University of Saskatchewan (University of Saskatchewan)
  62. Decoding Neuron Transcriptome by SAGE
    Yuchan Kim, S.M. Wang · 2009 · Elsevier eBooks
  63. Paired‐End diTagging for Transcriptome and Genome Analysis
    Patrick Ng, Chia‐Lin Wei, Yijun Ruan · 2006 · Current Protocols in Molecular Biology
  64. SAGE2Splice: Unmapped SAGE Tags Reveal Novel Splice Junctions
    Byron Yu-Lin Kuo, Ying Chen, Slavita Bohacec, Öjvind Johansson, Wyeth W. Wasserman, Elizabeth M. Simpson · 2005 · PLoS Computational Biology
  65. Correction: DeepSAGE Reveals Genetic Variants Associated with Alternative Polyadenylation and Expression of Coding and Non-coding Transcripts
    Daria V. Zhernakova, Eleonora de Klerk, Harm-Jan Westra, Anastasios Mastrokolias, Shoaib Amini, Yavuz Ariyürek, Rick Jansen, Brenda W.J.H. Penninx, Jouke‐Jan Hottenga, Gonneke A. H. M. Willemsen et al. · 2013 · PLoS Genetics
  66. Innovative technology for cancer risk analysis
    S. Tommas, Katia Danza, Brunella Pilato, Simona De Summa · 2011 · Annals of Oncology
  67. Explore the RNA-sequencing and the next-generation sequencing in crops responding to abiotic stress
    Éderson Akio Kido, José Ribamar Costa Ferreira‐Neto, Eliseu Binneck, Manassés da Silva, Wilson da Silva, Ana Maria Benko‐Iseppon · 2022 · Elsevier eBooks
  68. Molecular Approaches in Deciphering Abiotic Stress Signaling Mechanisms in Plants
    Swati Singh, Nisha Khatri, Arpana Katiyar, Yashwanti Mudgil · 2015 · Springer eBooks
  69. Gene expression profiling of chickpea responses to drought, cold and high-salinity using cDNA microarray
    Nitin L. Mantri · 2011 · RMIT Research Repository (RMIT University Library)
  70. A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling
    Daniel Guariz Pinheiro, Pedro A. F. Galante, SANDRO JOSÉ DE SOUZA, Marco Antonio Zago, Wilson A. Silva · 2009 · BMC Bioinformatics
  71. Differential gene expression profile in ischemic myocardium of Wistar rats with acute myocardial infarction
    Chunyu Guo, Hui-jun Yin, Yuerong Jiang, Mei Xue, Dazhuo Shi · 2008 · 中国科学通报:英文版
  72. Increased frequency of single base substitutions in a population of transcripts expressed in cancer cells
    Laurent Bianchetti, David Kieffer, Rémi Féderkeil, Olivier Poch · 2012 · BMC Cancer
  73. SAGE and LongSAGE
    Annabeth Laursen Høgh, Kåre Lehmann Nielsen · 2008 · Methods in molecular biology
  74. String Mathematics, BLAST, and FASTA
    Xuhua Xia · 2018 · Springer eBooks
  75. Coffee Bean Transcriptome
    Bing Cheng, Robert James Henry · 2019 · Elsevier eBooks
  76. History and definitions of ncRNAs
    Sarah D. Diermeier, Megan Leask · 2023 · Elsevier eBooks
  77. Selective Internal Radiation Therapy—Tackling the Tumor, Sparing the Organ
    Janet C. Miller, Lawrence Scott Blaszkowsky, Sanjeeva Prasad Kalva, Instructor in Radiology, Instructor in Medicine · 2008 · touchREVIEWS in Oncology & Haematology
  78. Transcriptomics Applied to Rice Grain Quality
    Carlos Busanello, Railson Schreinert dos Santos, Vívian Ebeling Viana · 2020 · Springer eBooks
  79. Genome resources for the DT40 community
    Randolph B. Caldwell, Andrzej M. Kierzek · 2006 · Sub-cellular biochemistry/Subcellular biochemistry
  80. Analysis of Plant Gene Expression Using Flow Cytometry and Sorting
    David W. Galbraith · 2007
  81. Serial Analysis of Gene Expression (SAGE) for Studying the Platelet and Megakaryocyte Transcriptome
    Michael G. Tomlinson · 2011
  82. Multiplex Sequencing of Paired End Ditags for Transcriptome and Genome Analysis
    Chia‐Lin Wei, Yijun Ruan · 2008 · Wiley eBooks
  83. Direct Sequencing by TEM of Z ‐Substituted DNA Molecules
    William K. Thomas, William R. Glover · 2008
  84. Serial Analysis of Gene Expression and Gene Trapping to Identify Nuclear Receptor Target Genes
    Hana Koutníková, Elisabeth Fayard, Jürgen Lehmann, Johan H. Auwerx · 2003 · Methods in enzymology on CD-ROM/Methods in enzymology
  85. Gene expression profiling in breast cancer: from molecular portraits to personalized medicine
    Kornélia Polyák · 2004 · Clinical & Translational Oncology
  86. Transcriptome Analysis of Medicinal Plant with Next‐Generation Sequencing Technologies
    Shilin Chen, Hongmei Luo · 2014 · Wiley eBooks
  87. Tag‐Seq: Next‐Generation Tag Sequencing for Gene Expression Profiling
    A. Sorana Morrissy, Yongjun Zhao, Allen D. Delaney, Jennifer K. Asano, Noreen Dhalla, Irene Li, Helen McDonald, Pawan K. Pandoh, Anna‐Liisa Prabhu, Angela Tam et al. · 2011
  88. Modification of LongSAGE for Obtaining and Cloning Long Concatemers
    Winnie W. Y. Chum, Hoi Shan Kwan · 2005 · BioTechniques
  89. SAGE Analysis of Cell Types Involved in Tolerance Induction
    Kathleen F. Nolan, Stephen Paul Cobbold, Herman Waldmann · 2007 · Methods in molecular biology
  90. Serial Analysis of Gene Expression
    Anthony Berndt, Cairine Logan · 2008 · Springer eBooks
  91. Repurposing the dark genome. II - Reverse Proteins
    Sarangadhar Nayak, Pawan Kumar Dhar · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  92. Isolation and Functional Analysis of Putative Effectors from Magnaporthe oryzae Using Integrated Genomic Approaches
    Songbiao Chen, Malali Gowda, R C Venu, Pattavipha Songkumarn, Chan Ho Park, Maria del Rosario Bellizzi, Daniel J. Ebbole, Guo‐Liang Wang · 2009 · Springer eBooks
  93. Sequencing-based Expression Profiling in Zebrafish
    Liang Jin, Gabriel Renaud, Shawn M. Burgess · 2011 · Methods in cell biology
  94. Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions
    Virginie Mittard-Runte, Thomas Bekel, Jochen Blom, Michael Dondrup, Kolja Henckel, Sebastian Jaenicke, Lutz Krause, Burkhard Linke, Heiko Neuweger, Susanne Schneiker-Bekel et al. · 2010 · Springer eBooks
  95. Application of Serial Analysis of Gene Expression to the Study of the Gene Expression Profile ofLeishmania infantum chagasiPromastigote
    Adelino Soares Lima Neto, Osvaldo P. de Melo Neto, Carlos Henrique Nery Costa · 2012 · BioMed Research International
  96. Transcriptome of pig muscle assessed by erial analysis of gene expression (SAGE)
    Simeone Dal Monego, Alberto Pallavicini, Giorgio Graziosi, Bruno Stefanon · 2005 · Italian Journal of Animal Science
  97. Molecular insights into the niche of harmful brown tides
    Louie L. Wurch · 2011
  98. Multiplexed Digital Gene Expression Analysis for Genetical Genomics in Large Plant Populations
    Christian Obermeier, Bertha M. Salazar-Colqui, Viola Spamer, Rod J. Snowdon · 2014 · Methods in molecular biology
  99. Fundamentals of Proteomics
    Xuhua Xia · 2018 · Springer eBooks
  100. New Era of Genome-Wide Gene Expression Analysis
    Norihiro Maeda · 2019