Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo

Cited by (221)

Items 201–221 of 221

1. Additional file 1 of A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
   Halstead, Michelle M., Kern, Colin, Perot Saelao, Ying Wang, Ganrea Chanthavixay, Medrano, Juan F., Alison Louise Van Eenennaam, Ian F. Korf, Tuggle, Christopher K., Catherine W. Ernst et al. · 2020 · Figshare
2. Additional file 1 of Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
   Cao, Fan, Zhang, Yu, Yichao Cai, Sambhavi Animesh, Zhang, Ying, Semih Can Akıncılar, Yan Ping Loh, Li, Xinya, Chng, Wee Joo, Tergaonkar, Vinay et al. · 2021 · Figshare
3. Additional file 4 of The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality
   Sofia Kamalyan, Olga Kyrchanova, Klimenko, Natalia, Valentin Babosha, Yulia Vasileva, Elena Belova, Д. В. Фурсенко, Maksimenko, Oksana, Pavel G Georgiev · 2024 · Figshare
4. Additional file 2 of The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality
   Sofia Kamalyan, Olga Kyrchanova, Klimenko, Natalia, Valentin Babosha, Yulia Vasileva, Elena Belova, Д. В. Фурсенко, Maksimenko, Oksana, Pavel G Georgiev · 2024 · Figshare
5. Additional file 1 of The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality
   Sofia Kamalyan, Olga Kyrchanova, Klimenko, Natalia, Valentin Babosha, Yulia Vasileva, Elena Belova, Д. В. Фурсенко, Maksimenko, Oksana, Pavel G Georgiev · 2024 · Figshare
6. Additional file 2 of Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
   Cao, Fan, Zhang, Yu, Yichao Cai, Sambhavi Animesh, Zhang, Ying, Semih Can Akıncılar, Yan Ping Loh, Li, Xinya, Chng, Wee Joo, Tergaonkar, Vinay et al. · 2021 · Figshare
7. Additional file 3 of The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality
   Sofia Kamalyan, Olga Kyrchanova, Klimenko, Natalia, Valentin Babosha, Yulia Vasileva, Elena Belova, Д. В. Фурсенко, Maksimenko, Oksana, Pavel G Georgiev · 2024 · Figshare
8. Epigenetic regulation of cardiac physiology and pathophysiology: biological sex matters
   Omid Mohammad Tavakoli‐Rouzbehani, Marta W. Szulik, Clint Gwynn, Sophie L. Stephens, Riley W. Porter, Isidoro Cobo, Manuel Rosa‐Garrido, Sarah Franklin, Sihem Boudina · 2026 · The Journal of Cardiovascular Aging
9. Chiron3D: an interpretable deep learning framework for understanding the DNA code of chromatin looping
   Sebastian Hönig, Aayush Grover, Piero Neri, Didier Surdez, Valentina Boeva · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
10. Etudes des éléments cis-régulateurs : identification et caractérisation
    Jeanne Chèneby · 2019 · theses.fr (ABES)
11. Dynamics of the PRC1 complex during normal development and cancer in Drosophila melanogaster
    Vincent Loubière · 2018
12. Leveraging combinations of epigenomic regulators
    Quentin Ferré · 2021 · theses.fr (ABES)
13. Influence of the genomic context on enhancer-promoter interactions during early Drosophila embryogenesis
    Alexia Grasso · 2021
14. Etude de la topoisomérase VI et de ses partenaires dans la fonction isolatrice barrière et la réponse au stress photo-oxydant chez Arabidopsis thaliana
    Florent Velay · 2022
15. Chromatin topology control by a muscle-specific ribosomal protein
    Makoto Nakamura, Xiaoxin Chen, Shun Yao, Lynette Xin Chan, Ruan Hongmei, Alexis Boulinguiez, Nav Lally, Hao Wu, Kara Kodani, Kentaro Hirose et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
16. Cross-platform Hi-C meta-analysis identifies functional insulators that actively block enhancer-promoter interactions
    Jian Cui, Wanying Xu, Xiaodong Lang, Shanshan Zhang, Leina Lu, Xiaoxiao Liu, Yan Li, Fulai Jin · 2026 · Nature Communications
17. G-quadruplex structures as regulators of cellular processes and drivers of genome instability in cancer
    Anna R. Bartosik, Magda Bujnowska, Daniel B. Stovall, Aakrosh Ratan, Yuh‐Hwa Wang · 2026 · Critical Reviews in Biochemistry and Molecular Biology
18. DeCTCF: Decoding CTCF binding sequences by leveraging predicted epigenomic features
    Lu Chai, Jie Gao, Tinghe Guo, Teer Ba, Zihan Li, Junjie Liu, Yong Wang, Lirong Zhang · 2026 · PLoS Computational Biology
19. Chiron3D: an interpretable deep learning framework for understanding the DNA code of chromatin looping
    Sebastian Hönig, Aayush Grover, Piero Neri, Didier Surdez, Valentina Boeva · 2026 · Bioinformatics
20. Role of Chromatin-Associated RNAs in Eye Physiology and Pathology
    Ieva Savickyte, Audronė Lapinaitė · 2026 · Methods in molecular biology
21. Activation of alpha-globin transcription in primary mouse erythroid progenitors
    Robert A. Beagrie, A. Marieke Oudelaar · 2020 · Discovery Research Portal (University of Dundee)