High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

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    Jang Soo Yook, Jihyun Kim, Jinhyun Kim · 2021 · Frontiers in Systems Neuroscience
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    Wei Cong, Yun Shi, Yanqing Qi, Jinyun Wu, Ling Gong, Miao He · 2020 · Journal of Neuroscience Methods
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    Sophie Laturnus, Dmitry Kobak, Philipp Berens · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
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    Yuna Chen, Weichao Zhao, Lu Gan, Chaobo Huang, Xudong Liu, Dingxin Long, Yi Cao · 2025 · Chemico-Biological Interactions
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    Yang Wu, Zidong Yang, Mingyuan Liu, Yan Han · 2023 · Brain Structure and Function
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    Xinglong Wu, Yuhang Tao, Guangzhi He, Dun Liu, Fan Meiling, Shuo Yang, Hui Gong, Rong Xiao, Shangbin Chen, Jin Huang · 2021 · Frontiers in Neuroscience
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    Miao Ren, Jiaojiao Tian, Qingtao Sun, Siqi Chen, Ting Luo, Xueyan Jia, Tao Jiang, Qingming Luo, Hui Gong, Xiangning Li · 2021 · Biomedical Optics Express
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    Yuxin Li, Tong Ren, Junhuai Li, Xiangning Li, Anan Li · 2022 · Biomedical Optics Express
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    Yiwei Li, Shengdian Jiang, Liya Ding, Lijuan Liu · 2023 · Bioinformatics Advances
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    Diek W. Wheeler, Shaina Banduri, Sruthi Sankararaman, Samhita Vinay, Giorgio A. Ascoli · 2024 · Nature Communications
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    Zuo-Han Zhao, Lijuan Liu, Yufeng Liu · 2024 · Bioinformatics
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    Dan Shen, Yafeng Li, Meng Wang, Yutong Han, Bolin Lu, Hui Gong, Qingming Luo, Jing Yuan · 2024 · Photonics Research
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    Bingqing Ji, Jiale Chen, Hui Gong, Xiangning Li · 2024 · International Journal of Molecular Sciences
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    Can Zhou, Ting Zheng, Ting Luo, Cheng Yan, Qingtao Sun, Miao Ren, Peilin Zhao, Wu Chen, Bingqing Ji, Zhi Wang et al. · 2020 · Biomedical Optics Express
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    Hua Shi, Yue Guan, Jianwei Chen, Qingming Luo · 2019 · Photonics
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    Xuecen Wang, Jiahao Wang, Xinpei Zhu, Yao Zheng, Ke Si, Wei Gong · 2017 · Journal of Innovative Optical Health Sciences
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    Xiao Chen, Xiaoyu Zhang, Qiuyuan Zhong, Qingtao Sun, Jie Peng, Hui Gong, Jing Yuan · 2017 · Biomedical Optics Express
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    Tianfang Zhu, Gang Yao, Dongli Hu, Chuangchuang Xie, Hui Gong, Anan Li · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
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    Pengpeng Sheng, Gangming Zhao, Tingting Han, Lei Qu · 2025 · IEEE Transactions on Medical Imaging
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    Rong Xiao, Lei Zhu, Jiangshan Liao, Xinglong Wu, Hui Gong, Jin Huang, Ping Li, Bin Sheng, Shangbin Chen · 2023 · Neurophotonics
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    Yufeng Liu, Sujun Zhao, Zhixi Yun, Feng Xiong, Hanchuan Peng · 2025 · Nature Neuroscience
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    Ankur Gogoi, Gerd E. Keiser, Fu‐Jen Kao, Ann‐Shyn Chiang · 2018 · Progress in optical science and photonics
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    Xin Li, Bowen Zhang, Yanmei Liang, Ting Li · 2023 · BioMedical Engineering OnLine
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    Hua Shi, Qingming Luo · 2017 · Journal of Biophotonics
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    Giorgio A. Ascoli, Bing‐Xing Huo, Partha P. Mitra · 2022 · 中国科学通报：英文版
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    Yu Wang, Li Ye · 2024 · Cell Research
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    Wenkai Lin, Xinyan Zhu, Xuemin Yu, Zhuowen Fang, Qinyan Xia, Cheng Li, Menghan Li, Xiaoyun Qiu, Lingyu Xu, Sile An et al. · 2025 · Nature Communications
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    Xiaoli Qi, Rodrigo Muñoz-Castañeda, Yuanlei Yue, Sheng Xiao, Liya Ding, Arun Narasimhan, Xin Chen, Wei Wang, Yuanyuan Li, Corey Elowsky et al. · 2025 · Nature Methods
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    Wenwei Li, Wu Chen, Zimin Dai, Xiaokang Chai, Sile An, Zhuang Guan, Wei Zhou, Jianwei Chen, Hui Gong, Qingming Luo et al. · 2024 · Computer Methods and Programs in Biomedicine
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    Xiao Liu, Chaojuan Yang, Zhuoran Lin, Jianing Li, Bin Yin, Xuepei Lei, Wei Han, Boqin Qiang, Pengcheng Shu, Chen Zhang et al. · 2024 · Science China Life Sciences
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    Jun Wu, Yong Zhang, Zaiyang Tao, Meng Li, Tingting Han, Yuanyuan Li, Lingfei Zhu, Yiwei Niu, Lei Qu · 2025 · Signal Processing
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    Shilin Zhong, Xiaoting Zhang, Xinwei Gao, Zhongyu Li, Linling Huang, Qingchun Guo, Rong Gong, Jing Ren, Minmin Luo, Rui Lin · 2025 · Neuron
55. Automating brain mapping
    Brigitta B. Gundersen · 2016 · Nature Methods
56. Hippocampal Mitochondrial Abnormalities Induced the Dendritic Complexity Reduction and Cognitive Decline in a Rat Model of Spinal Cord Injury
    Xvlei Hu, Liang Wu, Yujun Wen, Juan Liu, Hailiang Li, Yifan Zhang, Zhihua Wang, Jiangwei Ding, Zhong Zeng, Hechun Xia · 2022 · Oxidative Medicine and Cellular Longevity
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    熊子涵 Xiong Zihan, 宋良峰 Song Liangfeng, 刘欣 Liu Xin, Chao Zuo, 郜鹏 Gao Peng · 2022 · Infrared and Laser Engineering
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    Deepa Kamath Kasaragod, Hidenori Aizawa · 2023 · Scientific Reports
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    Nestor Timonidis, Mario Rubio-Teves, Carmen Alonso-Martínez, Rembrandt Bakker, María García‐Amado, Paul H. E. Tiesinga, Francisco Clascá · 2023 · Neuroinformatics
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    Bolin Lu, Zhangheng Ding, Kefu Ning, Xiaoyu Zhang, Xiangning Li, Jiangjiang Zhao, Ruiheng Xie, Dan Shen, Jiahong Hu, Tao Jiang et al. · 2024 · APL Photonics
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    Gaigai Li, Gaigai Li, Yang Hu, Yanfang Chen, Zhouping Tang, Yang Hu, Yanfang Chen, Zhouping Tang · 2017 · Translational Neuroscience and Clinics
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    Shuxia Guo, Jie Xue, Jian Liu, Xiangqiao Ye, Yichen Guo, Di Liu, Xuan Zhao, Feng Xiong, Xiaofeng Han, Hanchuan Peng · 2022 · Brain Informatics
63. Diversity of GABAergic interneurons and diversification of communication modules in cortical networks
    Z. Josh Huang, Anirban Paul · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
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    Peng Chen, Yu Wang, Qing‐Hong Shan, Xiangning Li, Hui Gong, Yan Jin, Zhi Zhang, Jiang‐Ning Zhou · 2019 · SSRN Electronic Journal
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    Konrad Rokicki, David Schauder, Donald J. Olbris, Cristian Goina, Jody Clements, Patrick Edson, Takashi Kawase, Robert Svirskas, Cameron Arshadi, David H. Feng et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
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    Juan Chen, Haihua Ma, Zhiyu Deng, Qingming Luo, Hui Gong, Ben Long, Xiangning Li · 2023 · International Journal of Molecular Sciences
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    Junxia Pan, Chaoyue Yang, Ruijie Li, Jialin Li, Pei Sun, Yuanyang Liu, Ke Liu, Xiang Liao, Hongbo Jia, Zhengping Yu et al. · 2025 · Fundamental Research
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    Xiaojun Zhao, Yahui Xiao, Haoyang Wu, Guangcai Liu, Hui Gong, Qingming Luo, Xiaoquan Yang · 2025 · Optics Express
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    Zhengbo Wang, Dongdong Qin, Xintian Hu · 2017 · PubMed Central
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    Han Zhang, Chao Liu, Yifei Yu, Jianhua Dai, Ting Zhao, Nenggan Zheng · 2022 · Frontiers in Neuroinformatics
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    Lingli Zhang, Lei Huang, Zexin Yuan, Yuning Hang, Ying Zeng, Kaixiang Li, Lijun Wang, Haoyu Zeng, Xin Chen, Hairuo Zhang et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
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    Yufeng Liu, Sujun Zhao, Zhixi Yun, Feng Xiong, Hanchuan Peng · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
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    Li Ma, Xuantai Xu, Xiaoquan Yang · 2025 · Journal of Innovative Optical Health Sciences
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    Shen Li, Jun Yang, Mingze Cai, Zhe Zhao, Xin Zhao, Hao Li, Shuyi Ning, Guochao Yang, Wei Shen, Huailin Wang et al. · 2026 · Neuron
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    Yu Wang, Xiang‐Yu Pan, Bo Wu, Dan-Yang Li, S Wang, Xin‐Ya Qin, Qing‐Hong Shan, Peng Chen, Pu Hu, Hao Wang et al. · 2026 · Cell Discovery
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    Rohit Jena, Pratik Chaudhari, James C. Gee · 2026 · Nature Communications
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    Guixuan Gong, Xin Liu, Xueyan Jia, ben long, Siqi Chen, Tao Jiang, Yue Luo, Zhao Feng, Xiangning Li, Qingming Luo et al. · 2026 · Biomedical Optics Express
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    Kaoru Seiriki · 2019 · YAKUGAKU ZASSHI
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    Ebru Altuntaş, Kübra Gözütok, Burcu Özkan · 2020 · Elsevier eBooks
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    Zhiyi Chen, Weijie Zheng, Keliang Pang, Debin Xia, Lingxiao Guo, Xuejin Chen, Feng Wu, Hao Wang · 2023 · Frontiers in Neuroscience
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    Jiaojiao Tian, Yingying Chen, Tao Jiang, Xueyan Jia, Hui Gong, Xiangning Li · 2023 · iScience
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    Yuxin Li, Jia Cao, Anan Li, Xiangning Li, Zhao Feng · 2023 · International Conference on Photonics and Imaging in Biology and Medicine (PIBM)
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    Zhixiang Liu, Anan Li, Hui Gong, Xiaoquan Yang, Qingming Luo, Zhao Feng, Xiangning Li · 2024 · Cerebral Cortex
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    Yue Luo, Xiangning Li, Can Zhou, Guangcai Liu, Xueyan Jia, Xiaoquan Yang, Anan Li, Hui Gong, Zhao Feng · 2024 · Brain Structure and Function
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    Chao‐Yu Yang, Yan Xia Shen, Xiaoyang Qi, Lufeng Ding, Yanyang Xiao, Qingyuan Zhu, Hao Wang, Cheng Xu, Pak-Ming Lau, Pengcheng Zhou et al. · 2024 · Neuroscience Bulletin
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    Bin Duan, Yuzhang Shang, Dawen Cai, Yan Yan · 2025 · IEEE International Symposium on Biomedical Imaging (ISBI)
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    Le SUN, Jiulin Du · 2018 · Scientia Sinica Vitae
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    Yuxin Li, Anan Li, Junhuai Li, Hongfang Zhou, Ting Cao, Huaijun Wang, Kan Wang · 2021 · Frontiers in Neuroinformatics
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    Yury V. Kistenev, Denis Aleksandrovich Vrazhnov · 2022 · Springer eBooks
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    Shiwei Li, Tingwei Quan, Hang Zhou, F.-F. Yin, Anan Li, Ling Fu, Qingming Luo, Hui Gong, Shaoqun Zeng · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
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     Xiaojun Wang, Jason Tucciarone, Siqi Jiang, Fangfang Yin, Bor‐Shuen Wang, Dingkang Wang, Jia Yao, Xueyan Jia, Yuxin Li, Tao Yang et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)