Genetic dissection of the α-globin super-enhancer in vivo

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Items 101–200 of 393

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4. Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency
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6. Evolution of hemoglobin loci and their regulatory elements
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7. Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
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8. Enhancers predominantly regulate gene expression during differentiation via transcription initiation
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9. The Atoh7 remote enhancer provides transcriptional robustness during retinal ganglion cell development
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10. Bidirectional epigenetic editing reveals hierarchies in gene regulation
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11. Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo
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12. Dissection of the Fgf8 regulatory landscape by in vivo CRISPR-editing reveals extensive intra- and inter-enhancer redundancy
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14. A Dynamic Folded Hairpin Conformation Is Associated with α-Globin Activation in Erythroid Cells
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15. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-Seq Data Analysis
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16. An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo
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17. High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale
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18. Identification of a modular super-enhancer in murine retinal development
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19. Transcription factor-dependent ‘anti-repressive’ mammalian enhancers exclude H3K27me3 from extended genomic domains
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20. A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker
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21. An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity
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22. Dissection and function of autoimmunity-associated TNFAIP3 (A20) gene enhancers in humanized mouse models
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23. The role of globins in cardiovascular physiology
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24. Super-enhancers: A new frontier for glioma treatment
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25. Immune Disease-Associated Variants in Gene Enhancers Point to BET Epigenetic Mechanisms for Therapeutic Intervention
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26. Functional characterisation of cis -regulatory elements governing dynamic Eomes expression in the early mouse embryo
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27. Chromatin modules and their implication in genomic organization and gene regulation
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28. Regulatory elements in molecular networks
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29. Enhancer Talk
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30. Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints
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31. Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
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32. Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts
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33. Potential new approaches to the management of the Hb Bart’s hydrops fetalis syndrome: the most severe form of α-thalassemia
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34. The mouse alpha-globin cluster: a paradigm for studying genome regulation and organization
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35. The Functionality and Evolution of Eukaryotic Transcriptional Enhancers
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36. Progressing super-enhancer landscape during mammary differentiation controls tissue-specific gene regulation
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37. Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development
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38. Typical Enhancers, Super-Enhancers, and Cancers
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39. Single-cell chromatin accessibility identifies enhancer networks driving gene expression during spinal cord development in mouse
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40. Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin
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41. Super-Enhancers and CTCF in Early Embryonic Cell Fate Decisions
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42. Regulation of MFGE8 by the intergenic coronary artery disease locus on 15q26.1
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43. Mapping chromatin structure at base-pair resolution unveils a unified model of cis-regulatory element interactions
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44. Genomic effects of glucocorticoids
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45. The (unusual) heuristic value of Hox gene clusters; a matter of time?
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46. NGseqBasic - a single-command UNIX tool for ATAC-seq, DNaseI-seq, Cut-and-Run, and ChIP-seq data mapping, high-resolution visualisation, and quality control
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47. Spatial promoter–enhancer hubs in cancer: organization, regulation, and function
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48. Chromatin priming elements establish immunological memory in T cells without activating transcription
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49. The connection between BRG1, CTCF and topoisomerases at TAD boundaries
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50. Deep learning connects DNA traces to transcription to reveal predictive features beyond enhancer–promoter contact
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51. What is an enhancer?
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52. A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest
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53. Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts
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54. Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer
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55. Transcriptional enhancers at 40: evolution of a viral DNA element to nuclear architectural structures
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56. Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster
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57. Neonatal thyroxine activation modifies epigenetic programming of the liver
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58. Nanog Expression in Embryonic Stem Cells – An Ideal Model System to Dissect Enhancer Function
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59. An evolutionarily ancient mechanism for regulation of hemoglobin expression in vertebrate red cells
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60. Cellular identity at the single-cell level
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61. Functional genomic approaches to elucidate the role of enhancers during development
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62. Large-scale analysis of the integration of enhancer-enhancer signals by promoters
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63. Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals
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64. Characterization of a functional endothelial super-enhancer that regulates ADAMTS18 and angiogenesis
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65. Active regulatory elements recruit cohesin to establish cell specific chromatin domains
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66. Differential cytokine sensitivities of STAT5-dependent enhancers rely onStat5autoregulation
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67. Functional Consequences of Chromosomal Rearrangements on Gene Expression: Not So Deleterious After All?
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68. Super-Enhancers and Their Parts: From Prediction Efforts to Pathognomonic Status
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71. Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale
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73. Targeting phase separation on enhancers induced by transcription factor complex formations as a new strategy for treating drug-resistant cancers
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74. Developmental and housekeeping transcriptional programs display distinct modes of enhancer-enhancer cooperativity in Drosophila
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75. Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression
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76. Hyperacetylated chromatin domains mark cell type-specific genes and suggest distinct modes of enhancer function
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77. Recapitulation of erythropoiesis in congenital dyserythropoietic anemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities
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78. Integrated high-throughput analysis identifies super enhancers associated with chemoresistance in SCLC
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80. Experimental Validation and Prediction of Super-Enhancers: Advances and Challenges
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81. Emerging insights into enhancer biology and function
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82. Cell-specific and shared regulatory elements control a multigene locus active in mammary and salivary glands
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83. The structural and functional roles of CTCF in the regulation of cell type-specific and human disease-associated super-enhancers
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89. Engineering three-dimensional genome folding
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90. Enhancers navigate the three-dimensional genome to direct cell fate decisions
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93. Interplay between regulatory elements and chromatin topology in cellular lineage determination.
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95. Enhancers: A Focus on Synthetic Biology and Correlated Gene Expression
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96. Complexity of enhancer networks predicts cell identity and disease genes revealed by single-cell multi-omics analysis
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97. Epo reprograms the epigenome of erythroid cells
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98. Super enhancers – new analyses and perspectives on the low hanging fruit
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99. Cis-regulatory landscapes in development and evolution
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