The DOI matches its Crossref record; 31 of the 31 references it cites were found in a registry or an index.
Identification of a functional transposon insertion in the maize domestication gene tb1
Open accessAbstract
Genetic diversity created by transposable elements is an important source of functional variation upon which selection acts during evolution. Transposable elements are associated with adaptation to temperate climates in Drosophila, a SINE element is associated with the domestication of small dog breeds from the gray wolf and there is evidence that transposable elements were targets of selection during human evolution. Although the list of examples of transposable elements associated with host gene function continues to grow, proof that transposable elements are causative and not just correlated with functional variation is limited. Here we show that a transposable element (Hopscotch) inserted in a regulatory region of the maize domestication gene, teosinte branched1 (tb1), acts as an enhancer of gene expression and partially explains the increased apical dominance in maize compared to its progenitor, teosinte. Molecular dating indicates that the Hopscotch insertion predates maize domestication by at least 10,000 years, indicating that selection acted on standing variation rather than new mutation.
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Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
EXCOFFIER, L., & LISCHER, H. E. L. (2010) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2010.02847.x · Cited by 16,326
DnaSP, DNA polymorphism analyses by the coalescent and other methods
Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X., & Rozas, R. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg359 · Cited by 6,131
The Significance of Responses of the Genome to Challenge
McClintock, B. (1984) · Science · doi:10.1126/science.15739260 · Cited by 2,617
A Test of Neutral Molecular Evolution Based on Nucleotide Data
Hudson, R. R., Kreitman, M., & Aguadé, M. (1987) · Genetics · doi:10.1093/genetics/116.1.153 · Cited by 1,767
The evolution of apical dominance in maize
Doebley, J., Stec, A., & Hubbard, L. (1997) · Nature · doi:10.1038/386485a0 · Cited by 1,552
Self-citationThe TCP domain: a motif found in proteins regulating plant growth and development
Cubas, P., Lauter, N., Doebley, J., & Coen, E. (1999) · The Plant Journal · doi:10.1046/j.1365-313x.1999.00444.x · Cited by 824
Self-citationteosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance.
Doebley, J., Stec, A., & Gustus, C. (1995) · Genetics · doi:10.1093/genetics/141.1.333 · Cited by 758
Self-citationPatterns of DNA sequence polymorphism along chromosome 1 of maize ( Zea mays ssp. mays L.)
Tenaillon, M. I., Sawkins, M. C., Long, A. D., Gaut, R. L., Doebley, J. F., & Gaut, B. S. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.151244298 · Cited by 700
Self-citationThe Genetics of Maize Evolution
Doebley, J. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.092425 · Cited by 661
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Regulatory activities of transposable elements: from conflicts to benefits
Chuong, E. B., Elde, N. C., & Feschotte, C. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2016.139 · Cited by 1,489
Genetic Regulation of Shoot Architecture
Wang, B., Smith, S. M., & Li, J. (2018) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042817-040422 · Cited by 760
A transposable element in a NAC gene is associated with drought tolerance in maize seedlings
Mao, H., Wang, H., Liu, S., Li, Z., Yang, X., Yan, J., Li, J., Tran, L.-S. P., & Qin, F. (2015) · Nature Communications · doi:10.1038/ncomms9326 · Cited by 542
Comparative studies of gene expression and the evolution of gene regulation
Romero, I. G., Ruvinsky, I., & Gilad, Y. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3229 · Cited by 488
Zhang, L., Hu, J., Han, X., Li, J., Gao, Y., Richards, C. M., Zhang, C., Tian, Y., Liu, G., Gul, H., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09518-x · Cited by 459
Metadata
- Authors
- Studer, A., Zhao, Q., Ross-Ibarra, J., & Doebley, J.
- Venue
- Nature Genetics
- Published
- 2011-09-25
- Volume
- 43
- Issue
- 11
- Pages
- 1160-1163
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2060141463
- Cited by
- 802
- References
- 31
- FWCI
- 36.33
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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