Microbial sequestration of phosphorus in anoxic upwelling sediments

Climate change 2007: the physical science basis

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The Physical Science Basis

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The biogeochemical cycling of phosphorus in marine systems

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The marine phosphorus cycle

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Evidence for enhanced phosphorus regeneration from marine sediments overlain by oxygen depleted waters

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Dense Populations of a Giant Sulfur Bacterium in Namibian Shelf Sediments

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Phosphorus cycling in anoxic sediments

Noffke, A. (2014) · Helmholtz Centre for Ocean Research Kiel (GEOMAR) · Cited by 3

Cambrian Foreland Phosphogenesis in the Khuvsgul Basin of Mongolia

Anttila, E., Macdonald, F. A., Schoene, B., & Gaynor, S. P. (2025) · American Journal of Science · doi:10.2475/001c.125832 · Cited by 3

Integrated investigation of rare earth elements, molecular fossils, and stable isotopes in drill cores from deep-buried strata in the Yangtze Block: Implications for the Early Cambrian sedimentary environments

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The Role of Sediments in Modulating Nitrous Oxide Production in the Southern Benguela Upwelling System: Insights From Stable Isotopic Tracers

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Isotope constraints on nutrient supply, bio-productivity and redox dynamics in the Mesoproterozoic McArthur Basin, Australia: Insights from δ114Cd, δ13C and δ15N proxies

Noorian, Y., Farkaš, J., Collins, A. S., Frei, R., Stüeken, E. E., Walker, S. R., Piane, C. D., & Wong, W. W. (2025) · Earth and Planetary Science Letters · doi:10.1016/j.epsl.2025.119744 · Cited by 2

Microbial iron cycling illuminates the biological contribution and potential climate drivers of deep-sea rare earth element enrichment

Wang, P., Liu, D., Babakhani, P., Zhao, M., Zhu, Y., Ma, J., Zhang, G., Liu, C., Cao, J., Chen, F., et al. (2025) · Communications Earth & Environment · doi:10.1038/s43247-025-03100-8 · Cited by 2

Benthic phosphorus cycling in the northern Benguela upwelling system: excess P supply and altered pelagic nutrient stoichiometry

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Polyphosphate Content in Sediments of Stratified Lakes and Activated Sludge of Wastewater Treatment Plants Is Controlled by Iron-Mediated Phosphorus Availability

Schröder, L., Schmieder, P., & Hupfer, M. (2025) · ACS ES&T Water · doi:10.1021/acsestwater.5c00426 · Cited by 2

Elimination of reactive nitrogen in continental shelf sediments measured by membrane inlet mass spectrometry.

Neumann, A. (2014) · Cited by 2

Effects of Oxygen Loss on Carbon Processing and Heterotrophic Prokaryotes from an Estuarine Ecosystem: Results from Stable Isotope Probing and Cytometry Analyses

Tadonléké, R. D., Pollet, T., van Rijswijk, P., Berre, B. L., & Middelburg, J. J. (2015) · Estuaries and Coasts · doi:10.1007/s12237-015-0053-1 · Cited by 2

Microbial growth, biomass production, and controls

Kirchman, D. L. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.003.0008 · Cited by 2

Polyphosphate storage in the family Beggiatoaceae with a focus on the species Beggiatoa alba

Havemeyer, S. (2013) · Cited by 2

Elements, biochemicals, and structures of microbes

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0002 · Cited by 3

Climatic and Environmental Changes During Paleocene-Eocene Thermal Maximum in Egypt: An Overview

Khozyem, H. M., Adatte, T., & Keller, G. (2023) · Advances in Science, Technology & Innovation/Advances in science, technology & innovation · doi:10.1007/978-3-030-95637-0_12 · Cited by 2

The Marine Carbon Footprint: Challenges in the Quantification of the CO2 Uptake by the Biological Carbon Pump in the Benguela Upwelling System

Rixen, T., Lahajnar, N., Lamont, T., Koppelmann, R., Martin, B., Meiritz, L., Siddiqui, C., & van der Plas, A. K. (2024) · Ecological studies · doi:10.1007/978-3-031-10948-5_25 · Cited by 2

Solid phase phosphorus species and preservation of fish remains in marine sediments of areas of high primary productivity and oxygen seasonality (36°S, central South Chile)

Díaz-Ochoa, J. A., & Pantoja, S. (2014) · GEOCHEMICAL JOURNAL · doi:10.2343/geochemj.2.0286 · Cited by 2

Agricultural soils input predominantly contribute to organic phosphorus in the lake sediments: the evidence from the small watershed scale

Wang, H., Cai, Y., Wang, Y., Li, Q., & Yuan, H. (2025) · Plant and Soil · doi:10.1007/s11104-025-07602-4 · Cited by 1

Polyphosphate as an Integral Component of Global Phosphorus Cycling through Earth’s History

Wang, Z., He, P., Baldwin, M. A., & Gu, A. Z. (2026) · Environmental Science & Technology · doi:10.1021/acs.est.5c08597 · Cited by 2

Lacustrine Phosphorite in Late Cretaceous Nenjiang Formation of Songliao Basin and the Paleoenvironment Significance

Liu, J., Cui, K., Shi, Z., Zhao, J., Xi, D., & Wan, X. (2026) · Minerals · doi:10.3390/min16030292 · Cited by 1

Predation and Protists

Kirchman, D. L., & Shade, A. L. (2018) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0007 · Cited by 2

Predation and protists

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0007 · Cited by 1

Introduction

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0001 · Cited by 1

Introduction

Kirchman, D. L. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.003.0001 · Cited by 1

Chemotrophy-based phosphatic microstromatolites from the Mississippian at Drewer, Rhenish Massif, Germany

Zwicker, J., Smrzka, D., Gothieu, M., Libowitzky, E., Joachimski, M. M., Böttcher, M. E., & Peckmann, J. (2023) · Geological Magazine · doi:10.1017/s0016756823000493 · Cited by 1

Spectroscopic investigation of the speciation of phosphorus forms entering and leaving Everglades Stormwater Treatment Areas

Fisher, C. B., Vardanyan, L. G., & Judy, J. D. (2025) · Journal of Environmental Quality · doi:10.1002/jeq2.70037 · Cited by 1

Genomes and metagenomes of microbes and viruses

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0010 · Cited by 1

The ecology of viruses

Kirchman, D. L. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.003.0010 · Cited by 1

Genomes and meta-omics for microbes

Kirchman, D. L. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.003.0005 · Cited by 1

Sedimentological and geochemical constraints on the provenance and stratigraphy of the Lower Devonian “Moselschiefer” (southern Laurussian margin)

Grigowski, E., & McCann, T. (2019) · Zeitschrift der Deutschen Geologischen Gesellschaft · doi:10.1127/zdgg/2019/0209 · Cited by 1

Benthic metabolism and sediment nitrogen cycling in Baltic sea coastal areas : the role of eutrophication, hypoxia and bioturbation

Bonaglia, S. (2012) · DiVA (Stockholm University) · Cited by 1

Global Phosphorus Dynamics

Defforey, D., & Paytan, A. (2018) · doi:10.1093/obo/9780199363445-0097 · Cited by 1

Morphology and structure of putative fossilized phosphatic sulgur-bacteria and methanotrophic archea in 2.0 Ga old organic-rich mudstones, Zaonega formation

Mänd, K. (2013) · DSpace repository (University of Tartu)

On benthic fluxes of phosphorus in the Baltic Sea proper – drivers and estimates

Ekeroth, N. (2012) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Symbiosis and microbes

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0014

The nitrogen cycle

Kirchman, D. L. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.003.0012 · Cited by 1

Maldistribution of phosphorus in the Carboniferous–Permian atoll-type limestones of the Akiyoshi accretionary complex

Sakata, K., Nakazawa, T., Okai, T., & Ueno, K. (2015) · BULLETIN OF THE GEOLOGICAL SURVEY OF JAPAN · doi:10.9795/bullgsj.66.199

Distribution of Uranium in a Black Shale across the Shelf of the Late Pennsylvanian Midcontinent Sea

Lindaman, M. A. (2015) · doi:10.31390/gradschool_theses.1199

Symbioses and Microbes

Kirchman, D. L., & Shade, A. L. (2018) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0014

A utilização de biominerais como possíveis bioassinaturas microbianas

Callefo, F. (2018) · doi:10.47749/t/unicamp.2018.1091408

The nitrogen cycle

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0012

Physical-chemical environment of microbes

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0003

Community structure of microbes in natural environments

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0009

Phosphorites

Kudrass, H. R. (2014) · Springer eBooks · doi:10.1007/978-94-007-6644-0_30-1

Processes in anoxic environments

Kirchman, D. L. (2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.003.0011

Preface

(2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.002.0004

Copyright Page

(2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198789406.002.0003

Copyright Page

(2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.002.0003

Preface

(2011) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199586936.002.0004

Speciation of Phosphorus Entering and Leaving Everglades Stormwater Treatment Areas as Investigated Using Nmr, Xanes and EpmaPreprint

Buchanan, A. C., Vardanyan, L. G., & Judy, J. D. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.4779165

Spectroscopic Investigation of the Speciation of Phosphorus Entering and Leaving Everglades Stormwater Treatment AreasPreprint

Buchanan, A. C., Vardanyan, L. G., & Judy, J. D. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.4805449

Geochemistry of pore water

Chuang, P., Erhardt, A. M., & Abbott, A. N. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-99762-1.00078-4 · Cited by 1

Sedimentary biogeochemical gradients across the Sunda Shelf in the South China Sea and correlations with satellite observations

Zhang, Y., Deng, L., Ge, Z., Guo, L., & Li, Q. (2024) · Frontiers in Marine Science · doi:10.3389/fmars.2024.1414546

Extraordinary physiology of polyphosphate-accumulating Beggiatoa mats suggests a key role for phosphate buffering in marine sedimentsPreprint

Iakovchuk, N., Fabian, J., Dellwig, O., Hassenrück, C., & Schulz‐Vogt, H. N. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.22.624918

Formation process and controlling factors of sedimentary phosphorite deposit

Liu, B., Xiang-li, W. A. N. G., & Liu, C. (2025) · Bulletin of Mineralogy Petrology and Geochemistry · doi:10.3724/j.issn.1007-2802.20240153

Crystallochemical evolution of phosphorus-bearing minerals

Zhuang, Z., Li, Y., Yin, R., Tang, G., Wu, J., Li, C., & Lai, Y. (2025) · Palaeogeography Palaeoclimatology Palaeoecology · doi:10.1016/j.palaeo.2025.113116

Polyphosphate Dynamics in Marine Heterotrophic Bacteria Under Phosphorus and Organic Carbon Limitations

Gao, R., Yang, X., Zhang, Q., Yung, C. C. M., He, D., Yin, H., & Li, J. (2025) · Environmental Microbiology · doi:10.1111/1462-2920.70165

Metallogenic characteristics of the Meishucunian phosphorus deposits and relevant prospecting prediction of phosphorus resources in the Weining-Bijie area, Guizhou, China

Yang, R., Hongjian, L. I., ZHANG, Z., Rou, P. E. N. G., Wenming, W. U., Junbo, G. A. O., Kun, L. I. U., Jiyan, C. H. E. N., XIONG, C., Chuanqian, G. A. O., et al. (2025) · Acta Mineralogica Sinica · doi:10.3724/j.1000-4734.2025.45.103

Enzymatic stoichiometry as a reliable proxy for evaluating microbial nutrient limitation in lentic sediments and phosphorus-enriched soils: A meta-analysis

Ai, L., Qing, T., Fuzhong, W. U., Meilin, X. U. A. N., Yue, K., & Ni, X. (2026) · Pedosphere · doi:10.1016/j.pedsph.2026.02.013

Authigenic apatite formation mediated by sulfate-reducing bacteria using cyanobacterial biomass as the sole carbon and phosphorus sources

Pan, J., Liu, X., Wu, G., Liu, H., Zhang, D., & Dong, H. (2026) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2026.09.031

Processus microbiens de formation des gisements sédimentaires de phosphates actuels

Lamelo, S. R. (2017) · theses.fr (ABES) · doi:10.70675/a9876c9az24efz44c4z8d84z5b2d662e2f18

Impacts of phytoplankton blooms on the benthic phosphorus cycle in a coastal ecosystem (Bay of Vilaine, France)

Ratmaya, W., Andrieux-Loyer, F., Rabouille, C., Collin, K., Caradec, F., Laverman, A. M., Barillé, L., & Souchu, P. (2026) · Marine Environmental Research · doi:10.1016/j.marenvres.2026.108182

Biogeochemistry of sedimentary phosphorus in an enriched, sandy coastal area (Seine Bay, France)

Andrieux-Loyer, F., Kérouel, R., & Aminot, A. (2026) · Regional Studies in Marine Science · doi:10.1016/j.rsma.2026.105211

Carbon Cycle II

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0010

Carbon Cycle I

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0009

Elements, Biochemicals, and Cellular Structures

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0002

Biomass and Growth

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0004

The Physical-Chemical Environment

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0003

Preface

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.002.0004

Community Structure

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0005

Introduction

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0001

Genomes and Meta-Omics

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0006

Geomicrobiology

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0013

Glossary

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0015

The Nitrogen Cycle

Kirchman, D. L., & Shade, A. L. (2026) · Oxford University Press eBooks · doi:10.1093/9780197831632.003.0012

Decoding the paleoenvironmental and diagenetic signatures of ancient phosphorites using an integrated multidisciplinary approach

Schneider‐Mor, A., Hackley, P. C., McAleer, R. J., Jubb, A. M., Valentine, B. J., Hatcherian, J. J., & Nedzweckas, J. L. (2026) · Chemical Geology · doi:10.1016/j.chemgeo.2026.123703

Phosphorites

Kudraß, H. (2016) · Encyclopedia of earth sciences series/Encyclopedia of earth sciences · doi:10.1007/978-94-007-6238-1_30

Solid phase phosphorus species and preservation of fish remains in marine sediments of areas of high primary productivity and oxygen seasonality (36°S, central South Chile)

Díaz-Ochoa, J. A., & Pantoja, S. (2014) · GEOCHEMICAL JOURNAL · doi:10.2343/geochemj.2.0286 · Cited by 2

Phosphorus cycling and carbon burial in low-oxygen marine settings: Insights from modern basins

Slomp, C. P., Reed, D. C., Jilbert, T., & Mort, H. P. (2011)

Sulfide-oxidizing bacteria mediate authigenic apatite formation in phosphorite-containing sediments of the Namibian upwelling system - Evidence from P-33-labeling experiments

Brüchert, V., Goldhammer, T., Ferdelman, T. G., & Zabel, M. (2009) · Max Planck Digital Library · Cited by 1

Influence of water-column anoxia on the elemental fractionation of carbon and phosphorus during sediment diagenesis

Ingall, E. D., & Jahnke, R. A. (1997) · Marine Geology · doi:10.1016/s0025-3227(96)00112-0 · Cited by 329

Phosphorus diagenesis in deep-sea sediments: Sensitivity to water column conditions and global scale implications

Tsandev, I., Reed, D. C., & Slomp, C. P. (2012) · Chemical Geology · doi:10.1016/j.chemgeo.2012.08.012 · Cited by 41