Cited by 74interferon and immune responsesRNA and protein synthesis mechanismsImmune Response and Inflammation

Infection-specific phosphorylation of glutamyl-prolyl tRNA synthetase induces antiviral immunity

Open access
Lee, Eun-Young, Lee, Hyun-Cheol, Kim, Hyun-Kwan, Jang, Song Yee, Park, Seong-Jun, Kim, Yong-Hoon, Kim, Jong Hwan, Hwang, Jungwon +12 more·2016·Nature Immunology

Abstract

The mammalian cytoplasmic multi-tRNA synthetase complex (MSC) is a depot system that regulates non-translational cellular functions. Here we found that the MSC component glutamyl-prolyl-tRNA synthetase (EPRS) switched its function following viral infection and exhibited potent antiviral activity. Infection-specific phosphorylation of EPRS at Ser990 induced its dissociation from the MSC, after which it was guided to the antiviral signaling pathway, where it interacted with PCBP2, a negative regulator of mitochondrial antiviral signaling protein (MAVS) that is critical for antiviral immunity. This interaction blocked PCBP2-mediated ubiquitination of MAVS and ultimately suppressed viral replication. EPRS-haploid (Eprs+/-) mice showed enhanced viremia and inflammation and delayed viral clearance. This stimulus-inducible activation of MAVS by EPRS suggests an unexpected role for the MSC as a regulator of immune responses to viral infection.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/ni.3542

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Many ARSs respond to stimuli, including viral infection, immune activation, and toxins.

    “Many ARSs respond to stimuli, including viral infection, immune activation, and toxins (18, 23, 129).”

    From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [23]

    The Results section reports changes in ARS-related gene expression after viral infection, and the introductory text describes EPRS responding to interferon-γ stimulation. The paper also discusses several MSC components responding to stress, but the passages do not identify toxins as a stimulus for ARSs. No page numbers were provided in our copy. (LLM, conf=0.85)

    Experimental — accuracy not yet measured
  • EPRS inhibits the replication of RNA viruses, including vesicular stomatitis virus and influenza A virus, by promoting the innate immune response via up-regulation of the mitochondrial antiviral signaling protein.

    “EPRS has been shown to inhibit the replication of RNA viruses, including vesicular stomatitis virus and influenza A virus by promoting the innate immune response via up-regulation of the mitochondrial antiviral signaling protein (23).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 42

  1. [1]Guo M Yang XL Schimmel P New functions of aminoacyl-tRNA synthetases beyond translation Nat. Rev. Mol. Cell Biol 2010 11 668 674 20700144 PMC3042954
  2. [2]Ray PS Arif A Fox PL Macromolecular complexes as depots for releasable regulatory proteins Trends Biochem. Sci 2007 32 158 164 17321138
  3. [3]Sampath P Noncanonical function of glutamyl-prolyl-tRNA synthetase: gene-specific silencing of translation Cell 2004 119 195 208 15479637
  4. [5]Guo M Schimmel P Essential nontranslational functions of tRNA synthetases Nat. Chem. Biol 2013 9 145 153 23416400 PMC3773598
  5. [6]Tandle AT Endothelial monocyte activating polypeptide-II modulates endothelial cell responses by degrading hypoxia-inducible factor-1alpha through interaction with PSMA7, a component of the proteasome Exp. Cell Res 2009 315 1850 1859 19362550
  6. [7]Kim S You S Hwang D Aminoacyl-tRNA synthetases and tumorigenesis: more than housekeeping Nat. Rev. Cancer 2011 11 708 718 21941282
  7. [9]Ofir-Birin Y Structural switch of lysyl-tRNA synthetase between translation and transcription Mol. Cell 2013 49 30 42 23159739 PMC3766370
  8. [10]Kim DG Interaction of two translational components, lysyl-tRNA synthetase and p40/37LRP, in plasma membrane promotes laminin-dependent cell migration FASEB J 2012 26 4142 4159 22751010
  9. [11]Cho HY Assembly of multi-tRNA synthetase complex via heterotetrameric glutathione transferase-homology domains J. Biol. Chem 2015 290 29313 29328 26472928 PMC4705937
  10. [12]Wolfe CL Warrington JA Treadwell L Norcum MT A three-dimensional working model of the multienzyme complex of aminoacyl-tRNA synthetases based on electron microscopic placements of tRNA and proteins J. Biol. Chem 2005 280 38870 38878 16169847
  11. [13]Arif A Two-site phosphorylation of EPRS coordinates multimodal regulation of noncanonical translational control activity Mol. Cell 2009 35 164 180 19647514 PMC2752289
  12. [14]Jia J Arif A Ray PS Fox PL WHEP domains direct noncanonical function of glutamyl-prolyl tRNA synthetase in translational control of gene expression Mol. Cell 2008 29 679 690 18374644 PMC2819395
  13. [15]Vyas K Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in γ interferon-activated monocytes Mol. Cell. Biol 2009 29 458 470 19001086 PMC2612521
  14. [16]Schoenborn JR Wilson CB Regulation of interferon-γ during innate and adaptive immune responses Adv. Immunol 2007 96 41 101 17981204
  15. [17]Schroder K Hertzog PJ Ravasi T Hume DA Interferon-γ: an overview of signals, mechanisms and functions J. Leukoc. Biol 2004 75 163 189 14525967
  16. [18]Akira S Uematsu S Takeuchi O Pathogen recognition and innate immunity Cell 2006 124 783 801 16497588
  17. [19]McWhirter SM Tenoever BR Maniatis T Connecting mitochondria and innate immunity Cell 2005 122 645 647 16143094
  18. [20]Gack MU TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity Nature 2007 446 916 920 17392790
  19. [21]Belgnaoui SM Linear ubiquitination of NEMO negatively regulates the interferon antiviral response through disruption of the MAVS-TRAF3 complex Cell Host Microbe 2012 12 211 222 22901541
  20. [22]You F PCBP2 mediates degradation of the adaptor MAVS via the HECT ubiquitin ligase AIP4 Nat. Immunol 2009 10 1300 1308 19881509
  21. [23]Yang XL Structural disorder in expanding the functionome of aminoacyl-tRNA synthetases Chem. Biol 2013 20 1093 1099 24054183 PMC3782743
  22. [24]Sajish M Trp-tRNA synthetase bridges DNA-PKcs to PARP-1 to link IFN-γ and p53 signaling Nat. Chem. Biol 2012 8 547 554 22504299 PMC3780985
  23. [25]Arif A Jia J Moodt RA DiCorleto PE Fox PL Phosphorylation of glutamyl-prolyl tRNA synthetase by cyclin-dependent kinase 5 dictates transcript-selective translational control Proc. Natl. Acad. Sci. USA 2011 108 1415 1420 21220307 PMC3029695
  24. [26]Papatriantafyllou M Innate immunity: MAVS build-ups for defence Nat. Rev. Immunol 2011 11 570 571 21836618
  25. [27]Xia P IRTKS negatively regulates antiviral immunity through PCBP2 sumoylation-mediated MAVS degradation Nat. Commun 2015 6 8132 26348439 PMC4569712
  26. [28]Sekine S ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J 2003 22 676 688 12554668 PMC140737
  27. [29]Son J Conformational changes in human prolyl-tRNA synthetase upon binding of the substrates proline and ATP and the inhibitor halofuginone Acta Crystallogr. D Biol. Crystallogr 2013 69 2136 2145 24100331
  28. [30]van den Berg A Dowdy SF Protein transduction domain delivery of therapeutic macromolecules Curr. Opin. Biotechnol 2011 22 888 893 21489777
  29. [31]Cahuzac B Berthonneau E Birlirakis N Guittet E Mirande M A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases EMBO J 2000 19 445 452 10654942 PMC305581
  30. [32]Zhou H Sun L Yang XL Schimmel P ATP-directed capture of bioactive herbal-based medicine on human tRNA synthetase Nature 2013 494 121 124 23263184 PMC3569068
  31. [33]Rubin SM Deciphering the retinoblastoma protein phosphorylation code Trends Biochem. Sci 2013 38 12 19 23218751 PMC3529988
  32. [35]Yoneyama M The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses Nat. Immunol 2004 5 730 737 15208624
  33. [36]Takeuchi O Akira S Pattern recognition receptors and inflammation Cell 2010 140 805 820 20303872
  34. [37]Wang Y Tong X Ye X Ndfp1 negatively regulates RIG-I-dependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation J. Immunol 2012 189 5304 5313 23087404
  35. [38]Jacobs JL Zhu J Sarkar SN Coyne CB Regulation of mitochondrial antiviral signaling (MAVS) expression and signaling by the mitochondria-associated endoplasmic reticulum membrane (MAM) protein Gp78 J. Biol. Chem 2014 289 1604 1616 24285545 PMC3894340
  36. [39]Castanier C MAVS ubiquitination by the E3 ligase TRIM25 and degradation by the proteasome is involved in type I interferon production after activation of the antiviral RIG-I-like receptors BMC Biol 2012 10 44 22626058 PMC3372421
  37. [40]Rosen B Schick J Wurst W Beyond knockouts: the International Knockout Mouse Consortium delivers modular and evolving tools for investigating mammalian genes Mamm. Genome 2015 26 456 466 26340938
  38. [41]Pascua PN Virulence and transmissibility of H1N2 influenza virus in ferrets imply the continuing threat of triple-reassortant swine viruses Proc. Natl. Acad. Sci. USA 2012 109 15900 15905 23019374 PMC3465388
  39. [42]Kim SK A nineteen gene-based risk score classifier predicts prognosis of colorectal cancer patients Mol. Oncol 2014 8 1653 1666 25049118 PMC5528589
  40. [43]Han JM Leucyl-tRNA synthetase is an intracellular leucine sensor for the mTORC1-signaling pathway Cell 2012 149 410 424 22424946
  41. [44]French AP Mills S Swarup R Bennett MJ Pridmore TP Colocalization of fluorescent markers in confocal microscope images of plant cells Nat. Protoc 2008 3 619 628 18388944
  42. [45]Kim K Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex PLoS One 2013 8 e81734 24312579 PMC3846882

Cited by

Sorted by citations

Authors
Lee, E.-Y., Lee, H.-C., Kim, H.-K., Jang, S. Y., Park, S.-J., Kim, Y.-H., Kim, J. H., Hwang, J., Kim, J.-H., Kim, T.-H., Arif, A., Kim, S.-Y., Choi, Y.-K., Lee, C., Lee, C.-H., Jung, J. U., Fox, P. L., Kim, S., Lee, J.-S., & Kim, M. H.
Affiliations
  • Korea Research Institute of Bioscience and Biotechnology (KR)
  • Chungnam National University (KR)
  • Korea Institute of Science and Technology (KR)
  • Cleveland Clinic (US)
  • Chungbuk National University (KR)
  • University of Southern California (US)
Corresponding author
  • Kim, Tae-Hwan
  • Lee, Jong-Soo
Venue
Nature Immunology
Published
2016-09-05
Volume
17
Issue
11
Pages
1252-1262
ISSN
  • 1529-2908 (ISSN-L)
  • 1529-2916
OpenAlex
W2508327349
Cited by
74
References
3
Citations by year
2026: 7 · 2025: 3 · 2024: 7 · 2023: 10 · 2022: 7 · 2021: 4 · 2020: 13 · 2019: 9 · 2018: 6 · 2017: 6 · 2016: 2
FWCI
4.65
Type
journal article
Language
en
Open access
Locations
  • Nature Immunology (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • eScholarship (California Digital Library) (submittedVersion)
  • KRIBB Repository (submittedVersion)
Funders
  • National Heart, Lung, and Blood Institute (P01HL029582)
  • National Cancer Institute (R01CA082057)
  • National Institute of Allergy and Infectious Diseases (R01AI116585)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
Keywords
glutamyl-prolyl-tRNA synthetase, tRNA synthetase, MAVS, PCBP2, ubiquitination, antiviral immunity, viral infection, phosphorylation, viral replication
MeSH terms
Amino Acyl-tRNA Synthetases, Animals, Antiviral Agents, Disease Models, Animal, Immunity, Innate, Peptides, Phosphorylation, Protein Binding, RNA Virus Infections, RNA Viruses, Virus Diseases, Virus Replication, Signal Transduction, RNA-Binding Proteins, Mice, Knockout, Mice, Ubiquitination, Host-Pathogen Interactions, Disease Resistance

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review