Stem cell transcriptome profiling via massive-scale mRNA sequencing

Cloonan, Nicole, Forrest, Alistair R R, Kolle, Gabriel, Gardiner, Brooke B A, Faulkner, Geoffrey J, Brown, Mellissa K, Taylor, Darrin F, Steptoe, Anita L +11 more·2008·Nature Methods

Cited by (922)

Items 301–400 of 922

  1. Variable selection for general index models via sliced inverse regression
    Bo Jiang, Jun S. Liu · 2014 · The Annals of Statistics
  2. The Venom Gland Transcriptome of Latrodectus tredecimguttatus Revealed by Deep Sequencing and cDNA Library Analysis
    Quanze He, Zhigui Duan, Ying Yu, Zhen Liu, Zhonghua Liu, Songping Liang · 2013 · PLoS ONE
  3. Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing
    Beide Fu, S. He · 2012 · DNA Research
  4. An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments
    Erin E. Heyer, Hakan Özadam, Emiliano P. Ricci, Can Cenik, Melissa J. Moore · 2014 · Nucleic Acids Research
  5. Base Preferences in Non-Templated Nucleotide Incorporation by MMLV-Derived Reverse Transcriptases
    Paweł Zając, Saiful Islam, Hannah Hochgerner, Peter Lönnerberg, Sten Linnarsson · 2013 · PLoS ONE
  6. Genome-wide in silico prediction of gene expression
    Robert C. McLeay, Tom Lesluyes, Gabriel Cuéllar-Partida, Timothy L. Bailey · 2012 · Bioinformatics
  7. Transcriptome-wide analysis of protein–RNA interactions using high-throughput sequencing
    Miha Milek, Emanuel Wyler, Markus Landthaler · 2011 · Seminars in Cell and Developmental Biology
  8. Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome
    R. Chaudhuri, Lu Yu, A. Kanji, Timothy T. Perkins, P. Gardner, Jyoti S. Choudhary, D. Maskell, Andrew J. Grant · 2011 · Microbiology
  9. The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe
    Ting Ni, K. Tu, Zhong Wang, Shen Song, Han Wu, Bin Xie, K. C. Scott, S. Grewal, Yuan Gao, Jun Zhu · 2010 · PLoS ONE
  10. Novel methodologies in marine fish larval nutrition
    L. Conceição, C. Aragão, N. Richard, S. Engrola, P. Gavaia, S. Mira, J. Dias · 2010 · Fish Physiology & Biochemistry
  11. Dynamics of the chili pepper transcriptome during fruit development
    Luis A Martínez-López, Neftalí Ochoa‐Alejo, Octavio Martínez · 2014 · BMC Genomics
  12. Transcriptome profiling and digital gene expression by deep-sequencing in normal/regenerative tissues of planarian Dugesia japonica
    Yunfei Qin, Hui-Min Fang, Qing-Nan Tian, Zhen-Xia Bao, Ping Lü, Jin-Mei Zhao, Jia Mai, Zhao-Yu Zhu, Lin-Lin Shu, Li Zhao et al. · 2011 · Genomics
  13. Massive-Scale RNA-Seq Analysis of Non Ribosomal Transcriptome in Human Trisomy 21
    Valerio Costa, Claudia Angelini, Luciana D’Apice, Margherita Mutarelli, Amelia Casamassimi, Linda Sommese, Maria Assunta Gallo, Marianna Aprile, Roberta Esposito, Luigi Leone et al. · 2011 · PLoS ONE
  14. RNA-seq analysis of 2 closely related leukemia clones that differ in their self-renewal capacity
    Brian T. Wilhelm, Mathieu Briau, Pamela Austin, Amélie Faubert, Geneviève Boucher, Pierre Chagnon, Kristin J. Hope, Simon Girard, Nadine Mayotte, Josette‐Renée Landry et al. · 2010 · Blood
  15. Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples
    Kapteyn, Jeremy, He, Ruifeng, McDowell, Eric T, Gang, David R · 2010 · BMC Genomics
  16. NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA
    Michael A. Schon, Max J. Kellner, Alexandra Plotnikova, Falko Hofmann, Michael D. Nodine · 2018 · Genome Research
  17. Digital gene expression for non-model organisms
    Lewis Zuocheng Hong, Jun Li, Anne Schmidt‐Küntzel, Wesley C. Warren, Gregory S. Barsh · 2011 · Genome Research
  18. Length bias correction for RNA-seq data in gene set analyses
    Liyan Gao, Zhide Fang, Kui Zhang, Degui Zhi, Xiangqin Cui · 2011 · Bioinformatics
  19. Developing genomic platforms for Chinese hamster ovary cells
    Anne Kantardjieff, Peter Morin Nissom, Song Hui Chuah, Faraaz N.K. Yusufi, Nitya M. Jacob, Bhanu Chandra Mulukutla, Miranda G.S. Yap, Wei‐Shou Hu · 2009 · Biotechnology Advances
  20. Transcriptome characterization and sequencing-based identification of drought-responsive genes in potato
    Ning Zhang, Bai-Lin Liu, Congyu Ma, Guodong Zhang, Jing Chang, Huai-Jun Si, Di Wang · 2013 · Molecular Biology Reports
  21. Capture and sequence analysis of RNAs with terminal 2′,3′-cyclic phosphates
    Kevin Schutz, Jay R. Hesselberth, Stanley Fields · 2010 · RNA
  22. Altruistic functions for selfish DNA
    Geoffrey J. Faulkner, Piero Carninci · 2009 · Cell Cycle
  23. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
    Isabelle Lesur, Grégoire Le Provost, Pascal Bento, Corinne Da Silva, Jean‐Charles Leplé, Florent Murat, Saneyoshi Ueno, Jérôme Bartholomé, Céline Lalanne, François Ehrenmann et al. · 2015 · BMC Genomics
  24. Sharing biological data: why, when, and how
    Samantha L. Wilson, Gregory P. Way, Wout Bittremieux, Jean‐Paul Armache, Melissa Anne Haendel, Michael M. Hoffman · 2021 · FEBS Letters
  25. MultiRankSeq: Multiperspective Approach for RNAseq Differential Expression Analysis and Quality Control
    Yan Ping Guo, Shilin Zhao, Fei Ye, Quanhu Sheng, Yu Shyr · 2014 · BioMed Research International
  26. The application of next-generation sequencing technologies to drug discovery and development
    Peter M. Woollard, Nalini Mehta, Jessica J. Vamathevan, Stephanie Van Horn, Bhushan K. Bonde, David J. Dow · 2011 · Drug Discovery Today
  27. High-confidence coding and noncoding transcriptome maps
    Bohyeon Yu, Sang-Ho Yoon, Jin‐Wu Nam · 2017 · Genome Research
  28. Computational approaches towards understanding human long non-coding RNA biology
    Saakshi Jalali, S. S. Kapoor, Ambily Sivadas, Deeksha Bhartiya, Vinod Scaria · 2015 · Bioinformatics
  29. Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd)
    Minyi Xie, Ying Huang, Yan-Ping Zhang, Xin Wang, Hua Yang, O. Yu, W. Dai, Cong-Bing Fang · 2013 · BMC Genomics
  30. Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions
    Cecilia Conaco, Pierre A. Neveu, Hongjun Zhou, Mary Luz Arcila, Bernard M. Degnan, Bernard M. Degnan, Kenneth S. Kosik · 2012 · BMC Genomics
  31. Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice
    Laura Carmen Terron-Camero, Fernando Gordillo-González, Eduardo Salas‐Espejo, Eduardo Andrés‐León · 2022 · Genes
  32. A Novel AP2/ERF Transcription Factor CR1 Regulates the Accumulation of Vindoline and Serpentine in Catharanthus roseus
    Jiaqi Liu, F. Gao, Juan-Sheng Ren, Xian-Jun Lu, G. Ren, Rui Wang · 2017 · Frontiers in Plant Science
  33. Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    K. Yokosho, Naoki Yamaji, Jian-Feng Ma · 2014 · Plant and Cell Physiology
  34. RNA-Seq and its applications: a new technology for transcriptomics
    Yunxia Qi, Yongbin Liu, Rong Wei-heng · 2011 · Hereditas (Beijing)
  35. Whole genome transcriptome analysis
    A. Forrest, Piero Carninci · 2009 · RNA Biology
  36. Bioinformatics for High Throughput Sequencing
    N. Rodríguez-Ezpeleta, M. Hackenberg, A. Aransay · 2012 · Springer: New York
  37. Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
    Thorsten Bischler, Hock Siew Tan, Kay Nieselt, Cynthia Mira Sharma · 2015 · Methods
  38. TopHat: discovering splice junctions with RNA-Seq
    Cole Trapnell, Lior S. Pachter, Steven L. Salzberg · 2009 · Bioinformatics
  39. Transcriptome sequencing of a highly salt tolerant mangrove species Sonneratia alba using Illumina platform
    Sufang Chen, Renchao Zhou, Yelin Huang, Meng Zhang, Guili Yang, Cairong Zhong, Suhua Shi · 2011 · Marine Genomics
  40. RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data
    Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean Michael Grimmond · 2009 · Bioinformatics
  41. High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer
    Shinichi Hashimoto, Wei Qü, Budrul Ahsan, Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki et al. · 2008 · PLoS ONE
  42. Perspectives on Bulk-Tissue RNA Sequencing and Single-Cell RNA Sequencing for Cardiac Transcriptomics
    Jana-Charlotte Hegenbarth, Giuliana Lezzoche, León J. De Windt, Monika Stoll · 2022 · Frontiers in Molecular Medicine
  43. RNA-seq Profiles of Immune Related Genes in the Spleen of Necrotic Enteritis-afflicted Chicken Lines
    A. D. Truong, Y. Hong, H. Lillehoj · 2015 · Asian-Australasian Journal of Animal Sciences
  44. RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm
    Onur Sakarya, Heinz Breu, Milan Radovich, Yongzhi Chen, Yulei Wang, Cátálin Bárbácioru, Sowmi Utiramerur, Penn Whitley, Joel P. Brockman, Paolo Vatta et al. · 2012 · PLoS Computational Biology
  45. Structural annotation of equine protein‐coding genes determined by mRNA sequencing
    Stephen J. Coleman, Zheng Zeng, K. Wang, Shujun J. Luo, Irina Khrebtukova, Michael J. Mienaltowski, Gary P. Schroth, Jinze Liu, James N. MacLeod · 2010 · Animal Genetics
  46. Oral Microbiome and Cancer Therapy-Induced Oral Mucositis
    Jean-Luc Mougeot, Craig B. Stevens, Darla S. Morton, Michael Thomas Brennan, Farah Bahrani Mougeot · 2019 · JNCI Monographs
  47. hnRNPDL extensively regulates transcription and alternative splicing.
    Ruth Li, Jing Hou, Yaxun Wei, Xiao-Tian Luo, Ya-Li Ye, Yi Zhang · 2019 · Gene
  48. Comparative Transcriptome Analysis Reveals Heat-Responsive Genes in Chinese Cabbage (Brassica rapa ssp. chinensis)
    Ai-Hua Wang, Jihong Hu, Xing-Xue Huang, Xia Li, Guo-Lin Zhou, Zhi-Xiang Yan · 2016 · Frontiers in Plant Science
  49. Transcriptomic changes during tuber dormancy release process revealed by RNA sequencing in potato
    Bailin Liu, Ning Zhang, Yikai Wen, Xin Jin, Jiangwei Yang, Huaijun Si, Di Wang · 2015 · Journal of Biotechnology
  50. High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
    Hyunghoon Cho, Joe R. Davis, Xin Li, Kevin S. Smith, Alexis J. Battle, Stephen B. Montgomery · 2014 · PLoS ONE
  51. Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes
    Ruosi Zhang, Lili Hao, Lingping Wang, Meili Chen, Wen Li, Rujiao Li, Jun Myoung Yu, Jingfa Xiao, Jiayan Wu · 2013 · BMC Genomics
  52. Technical considerations for functional sequencing assays
    Weihua Zeng, Ali Mortazavi · 2012 · Nature Immunology
  53. Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
    J. Duitama, P. Srivastava, I. Măndoiu · 2011 · BMC Genomics
  54. Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility.
    Xue-Mei Lu, J. Shapiro, C. Ting, Yan Li, Chunyan Li, Jin Xu, Huan-Wei Huang, Yan-Bo Cheng, A. Greenberg, Shou-Hsien Li et al. · 2010 · Genome Research
  55. Characterization of Human Salivary Extracellular RNA by Next-generation Sequencing
    Feng Li, Karolina Elżbieta Kaczor‐Urbanowicz, Jie Lena Sun, Blanca Majem, Hsien-Chun Lo, Yong Kim, Kikuye Koyano, Shannon Liu Rao, So Young Kang, Su Mi Kim et al. · 2018 · Clinical Chemistry
  56. Tracking the Emergence of High Affinity Aptamers for rhVEGF165 During Capillary Electrophoresis-Systematic Evolution of Ligands by Exponential Enrichment Using High Throughput Sequencing
    Jing Meng, Michael T. Bowser · 2013 · Analytical Chemistry
  57. The bench scientist's guide to statistical analysis of RNA-Seq data
    Craig R. Yendrek, Elizabeth A. Ainsworth, Jyothi Thimmapuram · 2012 · BMC Research Notes
  58. Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.
    T. Kyndt, S. Denil, A. Haegeman, G. Trooskens, T. de Meyer, W. van Criekinge, G. Gheysen · 2012 · Journal of Experimental Botany
  59. Epigenomic profiling of cancer cells
    Gaetano Gargiulo, Saverio Minucci · 2008 · The International Journal of Biochemistry & Cell Biology
  60. Epigenetics in aquaculture – the last frontier
    Luana Granada, Marco F.L. Lemos, Henrique N. Cabral, Peter Bossier, Sara C. Novais · 2017 · Reviews in Aquaculture
  61. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues
    Serghei Mangul, Harry Taegyun Yang, Nicolas B. Strauli, Franziska Gruhl, Hagit T. Porath, Kevin Hsieh, Linus Chen, Timothy Daley, Stephanie A. Christenson, Agata Wesolowska‐Andersen et al. · 2018 · Genome biology
  62. Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data
    Chung-I Li, Pei-Fang Su, Yu Shyr · 2013 · BMC Bioinformatics
  63. Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome
    Inês G. Mollet, Claudia Ben-Dov, Daniel Felício‐Silva, Ana Rita Grosso, Pedro Monteiro da Silva Eleuterio, Ruben Alves, Ray Staller, Tito Santos Silva, Maria Carmo‐Fonseca · 2010 · Nucleic Acids Research
  64. Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite
    Takehiro Hashimoto, Michiel de Hoon, Sean Michael Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner · 2009 · Bioinformatics
  65. Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
    Yan Ping Guo, Amma Bosompem, Sanjay Ram Mohan, Begüm Erdoğan, Fei Ye, Kasey C. Vickers, Quanhu Sheng, Shilin Zhao, Chung-I Li, Pei-Fang Su et al. · 2015 · BMC Genomics
  66. Genome-wide alternative polyadenylation in animals: insights from high-throughput technologies
    Yi Sun, Yonggui Fu, Yuxin Li, Anlong Xu · 2012 · Journal of Molecular Cell Biology
  67. Comparison of microarray and RNA-Seq analysis of mRNA expression in dermal mesenchymal stem cells
    Junqin Li, Ruixia Hou, Xuping Niu, Ruifeng Liu, Qiang Wang, Chunfang Wang, Xinhua Li, Zhongping Hao, Guohua Yin, Kaiming Zhang · 2015 · Biotechnology Letters
  68. Alternative splicing: An important mechanism in stem cell biology
    Kenian Chen · 2015 · World Journal of Stem Cells
  69. Methods for Quantifying Gene Expression in Ecoimmunology: From qPCR to RNA-Seq
    Carol A. Fassbinder‐Orth · 2014 · Integrative and Comparative Biology
  70. Peregrine
    Stanley A. Langevin, Zachary Bent, Owen D. Solberg, Deanna Joy Curtis, Pamela D. Lane, Kelly Porter Williams, Joseph S. Schoeniger, Anupama Sinha, Todd W. Lane, Steven S. Branda · 2013 · RNA Biology
  71. Correlation Pursuit: Forward Stepwise Variable Selection for Index Models
    Wenxuan Zhong, Tingting Zhang, Yu Zhu, Jun S. Liu · 2012 · Journal of the Royal Statistical Society Series B (Statistical Methodology)
  72. Unamplified cap analysis of gene expression on a single-molecule sequencer
    Mutsumi Kanamori-Katayama, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Shintaro Katayama, Miki Kojima, Nicolas Bertin, Ai Kaiho, Noriko Ninomiya, Carsten O. Daub et al. · 2011 · Genome Research
  73. Hypoxic and Cold Adaptation Insights from the Himalayan Marmot Genome
    Liang Bai, Baoning Liu, Changmian Ji, Sihai Zhao, Siyu Liu, Rong Wang, Weirong Wang, Pu Yao, Xuming Li, Xiaojun Fu et al. · 2018 · iScience
  74. Long non-coding RNAs in hematological malignancies: translating basic techniques into diagnostic and therapeutic strategies
    Nonthaphat Kent Wong, Chien‐Ling Huang, Rashidul Islam, Shea Ping Yip · 2018 · Journal of Hematology & Oncology
  75. Identification of targets of tumor suppressor microRNA-34a using a reporter library system
    Yoshiaki Ito, Atsushi Inoue, Timothy Seers, Yukari Hato, Arisa Igarashi, Tatsuya Toyama, Konstantin D. Taganov, Mark Boldin, Hiroshi Asahara · 2017 · Proceedings of the National Academy of Sciences
  76. Global Transcriptome Analysis Reveals Distinct Aluminum-Tolerance Pathways in the Al-Accumulating Species Hydrangea macrophylla and Marker Identification
    Hạixia Chen, Chang-Ping Lu, Hui Jiang, Jin-Qiang Peng · 2015 · PLoS ONE
  77. Non-coding RNA and pseudogenes in neurodegenerative diseases: “The (un)Usual Suspects”
    Valerio Costa, Roberta Esposito, Marianna Aprile, Alfredo Ciccodicola · 2012 · Frontiers in Genetics
  78. Detection of genetic alterations in hereditary colorectal cancer screening
    Marta Pineda, Sara González, Conxi Lázaro, Ignacio Blanco, Gabriel Capellá · 2009 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
  79. Widespread alternative exon usage in clinically distinct subtypes of Invasive Ductal Carcinoma
    Sunniva Stordal Bjørklund, Anshuman Panda, Surendra Kumar, Michael Seiler, Doug Robinson, Jinesh Gheeya, Ming Yao, Grethe I.G. Alnæs, Deborah Toppmeyer, Margit L. H. Riis et al. · 2017 · Scientific Reports
  80. Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.
    Ratan Chopra, Gloria B. Burow, Andrew D Farmer, Joann Mudge, Charles E. Simpson, Thea A. Wilkins, Michael R. Baring, Naveen Puppala, Kelly D. Chenault Chamberlin, Mark D. Burow · 2015 · Molecular Genetics and Genomics
  81. Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice
    Ferhat Öztürk, You Li, Xiujuan Zhu, Chittibabu Guda, Ali Nawshad · 2013 · BMC Genomics
  82. Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome.
    Ayelet T. Lamm, M. Stadler, Huibin Zhang, J. Gent, A. Fire · 2011 · Genome Research
  83. A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data
    Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, See Kiong Ng, Samik Ghosh, Lawrence JK Wee · 2016 · BMC Genomics
  84. FUS ‐mediated regulation of alternative RNA processing in neurons: insights from global transcriptome analysis
    Akio Masuda, Jun‐ichi Takeda, Kinji Ohno · 2016 · Wiley Interdisciplinary Reviews - RNA
  85. Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling
    Stinus Lindgreen, Sinan U. Umu, Alicia Sook-Wei Lai, Hisham Eldai, Wenting Liu, Stephanie McGimpsey, Nicole E. Wheeler, Patrick J. Biggs, Nicholas Robert Thomson, Lars Barquist et al. · 2014 · PLoS Computational Biology
  86. Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
    Nathaniel K. Jue, Michael B Murphy, Seth D. Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J. Foley, Rachel J. Waugh O'Neill, Michael J. O’Neill · 2013 · BMC Genomics
  87. Transcriptome Profiling Using Next-Generation Sequencing
    Yan W. Asmann, Michael B. Wallace, E. Aubrey Thompson · 2008 · Gastroenterology
  88. Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing
    Anis Djari, Diane Esquerré, Bernard Weiss, Frédéric Martins, Cédric Meersseman, Mekki Boussaha, Christophe Klopp, Dominique Rocha · 2013 · BMC Genomics
  89. TrueSight: a new algorithm for splice junction detection using RNA-seq
    Yang Li, Hongmei Li‐Byarlay, Paul D. Burns, Mark Yu. Borodovsky, Gene E. Robinson, Jian Ma · 2012 · Nucleic Acids Research
  90. High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm (Phoenix dactylifera, L.)
    Yuxin Yin, Xiaowei Zhang, Yongjun Fang, Linlin Pan, Gaoyuan Sun, Chengqi Xin, Mohammed M. Ba Abdullah, Xiaoguang Yu, Songnian Hu, Ibrahim S. Al‐Mssallem et al. · 2012 · Plant Molecular Biology
  91. SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
    Xutao Deng · 2011 · BMC Bioinformatics
  92. High-abundance mRNAs in Apis mellifera: comparison between nurses and foragers.
    Fang Liu, Wenfeng Li, Zhiguo Li, Shaowu Zhang, Shenglu Chen, S. Su · 2011 · Journal of insect physiology
  93. Statistical Analyses of Next Generation Sequence Data: A Partial Overview
    Susmita Datta, Somnath Datta, Seongho Kim, Sutirtha Chakraborty, R. Gill · 2010 · Journal of Proteomics & Bioinformatics
  94. Predicting expression: the complementary power of histone modification and transcription factor binding data
    David Budden, Daniel Hurley, Joseph Cursons, John F Markham, Melissa J. Davis, Edmund J. Crampin · 2014 · Epigenetics & Chromatin
  95. Transcriptome de novo assembly and differentially expressed genes related to cytoplasmic male sterility in kenaf (Hibiscus cannabinus L.)
    Peng Chen, Shanmin Ran, Ru Li, Zhipeng Huang, Jinghua Qian, Mingli Yu, Ruiyang Zhou · 2014 · Molecular Breeding
  96. Exploiting Single-Cell Tools in Gene and Cell Therapy
    Daniel Bode, Alyssa H. Cull, Juan A. Rubio-Lara, David G. Kent · 2021 · Frontiers in Immunology
  97. High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub)
    H. Rawal, Shrawan Kumar, Amitha Mithra S.V., A. Solanke, Deepti Nigam, S. Saxena, A. Tyagi, S. V, N. Yadav, P. Kalia et al. · 2017 · Genes
  98. mRNA enrichment protocols determine the quantification characteristics of external RNA spike-in controls in RNA-Seq studies
    Tao Qing, Ying Yu, Tingting Du, Leming M. Shi · 2013 · Science China Life Sciences
  99. Transcriptome Profiling Using Single-Molecule Direct RNA Sequencing
    Fatih Ozsolak, Patrice M. Milos · 2011 · Methods in molecular biology
  100. Somatosensory neuron types and their neural networks as revealed via single-cell transcriptomics
    Kaikai Wang, Bing Cai, Yuran Song, Yan Chen, Xu Zhang · 2023 · Trends in Neurosciences