Visual proteomics of the human pathogen Leptospira interrogans

Beck, Martin, Malmström, Johan A, Lange, Vinzenz, Schmidt, Alexander, Deutsch, Eric W, Aebersold, Ruedi·2009·Nature Methods

Cited by (156)

Items 101–156 of 156

  1. Ultrastructural analysis of neuronal synapses using state-of-the-art nano-imaging techniques
    Chang-Lu Tao, Chenglong Xia, Xiaobing Chen, Zhiwei Zhou, Guo‐Qiang Bi · 2012 · Neuroscience Bulletin
  2. Comparative proteomic analysis of lung tissue from guinea pigs with leptospiral pulmonary haemorrhage syndrome (LPHS) reveals a decrease in abundance of host proteins involved in cytoskeletal and cellular organization
    Simone Schüller, Kjell Sergeant, Jenny Renaut, John J. Callanan, Caitríona Scaife, Jarlath E. Nally · 2015 · Journal of Proteomics
  3. Putting structure into context: fitting of atomic models into electron microscopic and electron tomographic reconstructions
    Niels Volkmann · 2011 · Current Opinion in Cell Biology
  4. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification
    Yixiu Zhao, Xiangrui Zeng, Qiang Guo, Min Xu · 2018 · Bioinformatics
  5. Mass spectrometry for biologists
    Monya Baker · 2010 · Nature Methods
  6. Template matching and machine learning for cryo-electron tomography
    Antonio Martínez-Sánchez · 2025 · Current Opinion in Structural Biology
  7. A community approach to whole-cell modeling
    Jitin Singla, Kate L. White · 2021 · Current Opinion in Systems Biology
  8. Proteomics, morphoproteomics, saliva and breast cancer: An emerging approach to guide the delivery of individualised thermal therapy, thermochemotherapy and monitor therapy response
    Charles F. Streckfus, Robert Eldon Brown, Joan M. Bull · 2010 · International Journal of Hyperthermia
  9. Efficient Cryo-Electron Tomogram Simulation of Macromolecular Crowding with Application to SARS-CoV-2
    Sinuo Liu, Yan Ma, Xiaojuan Ban, Xiangrui Zeng, Vamsi Nallapareddy, Ajinkya Chaudhari, Min Xu · 2020 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  10. Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization
    Hmrishav Bandyopadhyay, Zihao Deng, Leiting Ding, Sinuo Liu, Mostofa Rafid Uddin, Xiangrui Zeng, Sima Behpour, Min Xu · 2021 · Bioinformatics
  11. Assessing the benefits of focal pair cryo-electron tomography
    Mikhail Kudryashev, Henning Stahlberg, Daniel Castaño‐Díez · 2011 · Journal of Structural Biology
  12. What shapes template-matching performance in cryogenic electron tomography in situ?
    Valentin J. Maurer, Marc Siggel, Jan Kosiński · 2024 · Acta Crystallographica Section D Structural Biology
  13. Multi-task Learning for Macromolecule Classification, Segmentation and Coarse Structural Recovery in Cryo-Tomography
    Chang Liu, Xiangrui Zeng, Kaiwen Wang, Qiang Guo, Min Xu · 2018 · PubMed
  14. Structural basis of flagellar filament asymmetry and supercoil templating by Leptospira spirochete sheath proteins
    Megan R. Brady, Fabiana San Martin, Garrett E. Debs, Kimberley H. Gibson, Azalia Rodríguez, Rosario Durán, Elsio Augusto Wunder, Albert Icksang Ko, Alejandro Buschiazzo, Charles Vaughn Sindelar · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  15. The Family Leptospiraceae
    Mathieu Picardeau · 2014 · Springer eBooks
  16. Recent technical advances in cellular cryo-electron tomography
    Tianyu Zheng, Shujun Cai · 2024 · The International Journal of Biochemistry & Cell Biology
  17. Geometry-aware template matching for cryo-electron tomograms in Dynamo
    Raffaele Coray, Daniel Castaño‐Díez · 2025 · Structure
  18. Electron Tomography: A Primer
    Andrew P. Leis · 2017 · Biological and medical physics, biomedical engineering
  19. Comparative transcriptome reveals the thermal stress response differences between Heilongjiang population and Xinjiang population of Lota lota
    Fangrui Lou, Manhong Liu, Zhiqiang Han, Tianxiang Gao · 2022 · Comparative Biochemistry and Physiology Part D Genomics and Proteomics
  20. Elusive data underlying debate at the prokaryote-eukaryote divide
    Marie Gerlitz, Michael R. Knopp, Nils Kapust, Joana C. Xavier, William F. Martin · 2018 · Biology Direct
  21. Domain Randomization for Macromolecule Structure Classification and Segmentation in Electron Cyro-tomograms
    Chengqian Che, Zhou Xian, Xiangrui Zeng, Xin Gao, Min Xu · 2019 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  22. Comprehensive Proteome Profiling of a Xanthomonas campestris pv. Campestris B100 Culture Grown in Minimal Medium with a Specific Focus on Nutrient Consumption and Xanthan Biosynthesis
    Ben Struck, Sanne J. Wiersma, Vera Ortseifen, Alfred Pühler, Karsten Niehaus · 2024 · Proteomes
  23. Image-derived generative modeling of pseudo-macromolecular structures - towards the statistical assessment of Electron CryoTomography template matching
    Kai Wen Wang, Xiangrui Zeng, Xiaodan Liang, Zhiguang Huo, Eric P. Xing, Min Xu · 2018 · PubMed
  24. Proteomics as a tool to understand Leptospira physiology and virulence: Recent advances, challenges and clinical implications
    Edson G. Nascimento Filho, Mônica L. Vieira, Aline F. Teixeira, Jademilson C. Santos, Luis G. V. Fernandes, Felipe José Passalia, Brenda B. Daroz, Amanda Diaz Rossini, Leandro T. Kochi, Maria F. Cavenague et al. · 2018 · Journal of Proteomics
  25. An accurate proteomic quantification method: Fluorescence labeling absolute quantification ( FLAQ ) using multidimensional liquid chromatography and tandem mass spectrometry
    Junyan Liu, Yang Liu, Mingxia Gao, Xiangmin Zhang · 2012 · PROTEOMICS
  26. Structure Determination by Single Particle Cryo‐electron Tomography
    Thomas Hrabe, Friedrich G. Förster · 2011 · Encyclopedia of Life Sciences
  27. Electron Tomography
    Takashi Ishikawa · 2015 · Elsevier eBooks
  28. Gradient-based high precision alignment of cryo-electron subtomograms
    Min Xu, Frank Alber · 2011 · IEEE International Conference on Systems Biology
  29. Visualizing the Bacterial Cell Surface: An Overview
    Harald Engelhardt · 2012 · Methods in molecular biology
  30. Small Heat Shock Proteins, a Key Player in Grass Plant Thermotolerance
    Kehua Wang, Xunzhong Zhang, Erik H. Ervin · 2016 · Heat shock proteins
  31. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography
    Jitin Singla, Kate L. White, Raymond C. Stevens, Frank Alber · 2021 · Journal of Structural Biology
  32. Structural Biology in Situ Using Cryo-Electron Subtomogram Analysis
    Stefan Pfeffer, Friedrich G. Förster · 2017 · Biological and medical physics, biomedical engineering
  33. 1.14 Structure Determination of Macromolecular Complexes by Cryo-Electron Microscopy in vitro and in situ
    Friedrich G. Förster, Elizabeth Villa, Dennis R. Thomas, Andreas Korinek, Wolfgang P. Baumeister · 2012 · Elsevier eBooks
  34. Automated detection of polysomes in cryoelectron tomography
    Luis Kuhn Cuellar, Stefan Pfeffer, Yuxiang Chen, Friedrich G. Förster · 2014 · Proceedings - International Conference on Image Processing
  35. Single-particle applications at intermediate resolution
    Bettina Böttcher, Katharina Hipp · 2010 · Advances in protein chemistry and structural biology
  36. Single and few cell analysis for correlative light microscopy, metabolomics, and targeted proteomics
    Luca Rima, Christian Berchtold, Stefan Arnold, Andri Fränkl, Rosmarie Sütterlin, Gregor Dernick, Götz Schlotterbeck, Thomas Braun · 2024 · Lab on a Chip
  37. Subproteomic signature comparison of in vitro selected fluoroquinolone resistance and ciprofloxacin stress in Salmonella Typhimurium DT104B
    Susana Correia, Michel Hébraud, Ingrid Chafsey, Christophe Chambon, Didier Viala, Cármen Torres, Manuela Caniça, José Luís Capelo, Patrícia Alexandra Curado Quintas D Poeta, Gilberto Igrejas · 2017 · Expert Review of Proteomics
  38. Detection and Interpretation of Cellular Structures in Tomograms: Segmentation, Localization and Spatial Pattern Analysis
    Antonio Martínez-Sánchez, Vladan Lučić · 2012 · Focus on structural biology
  39. Exploration of Nicotine Metabolism in Paenarthrobacter nicotinovorans pAO1 by Microbial Proteomics
    Marius Mihăşan, Cornelia Babii, Roshanak Aslebagh, Devika Channaveerappa, Emmalyn J. Dupree, Costel C. Darie · 2019 · Advances in experimental medicine and biology
  40. Adding a spatial dimension to the proteome
    Kay Grünewald · 2009 · Nature Methods
  41. Proteomics and its application in plant biotechnology
    Sylvain Bischof, Jonas Grossmann, Wilhelm Gruissem · 2011 · Elsevier eBooks
  42. ProViz: a tool for explorative 3-D visualization and template matching in electron tomograms
    Lennart Svensson, Stina Svensson, Ingela Nyström, Fredrik Nysjö, Johan Nysjö, Aurelie Laloeuf, Lianne den Hollander, Anders Brun, Sergej Masich, Linda Sandblad et al. · 2016 · Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization
  43. The Shape of Things in Cryo-ET: Why Emojis Aren’t Just for Texts
    Valentin J. Maurer, Marc Siggel, Jan Kosiński · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  44. The Chloroplast-Localized Plant sHsp in Arabidopsis Thaliana: Role of Its Oligomeric Conformation and Its Translocation into Membranes
    Katja Bernfur, Gudrun Rutsdottir, Cecilia Månsson, Cecilia Sundby Emanuelsson · 2015 · Heat shock proteins
  45. Elucidating the mechanism of cardiac ischemia and reperfusion by proteomics approach
    Li Xin · 2011
  46. 2.5 Studying the Macromolecular Machinery of Cells in situ by Cryo-Electron Tomography
    Vladan Lučić, Wolfgang P. Baumeister, Friedrich G. Förster · 2012 · Elsevier eBooks
  47. The Cell at Molecular Resolution
    Rubén Fernández‐Busnadiego, Vladan Lučić · 2012 · Elsevier eBooks
  48. Exploring small heat shock protein chaperones by crosslinking mass spectrometry
    Wietske Lambert · 2012 · Lund University Publications (Lund University)
  49. Tomography of the Hydrated Materials
    Vikas Mittal, Nadejda B. Matsko · 2012 · Engineering materials
  50. A Software Framework for the Detection and Classification of Biological Targets in Bio-Nano Sensing
    Abdul Hafeez · 2014 · ProQuest Demo Repository
  51. Optimization of solid phase PLA with emphasis on antibody modification
    Masood Kamali‐Moghaddam, Maria Hammond · 2010
  52. Single cell visual proteomics through pattern mining
    Min Xu, Elitza I. Tocheva, Yi‐Wei Chang, Grant J. Jensen, Frank Alber · 2015 · arXiv (Cornell University)
  53. Whole Proteome Approach to Delineate Leptospiral Pathogenesis
    Azad Eshghi · 2011 · UVic’s Research and Learning Repository (University of Victoria)
  54. Book review
    Jon Marles‐Wright · 2012 · Micron
  55. Cryo-Electron Tomography
    Takashi Ishikawa · 2022 · Elsevier eBooks
  56. New strategies for the identification and enumeration of macromolecules in 3D images of cryo electron tomography
    Emmanuel Moebel · 2019