Quantitative assessment of single-cell RNA-sequencing methods
Wu, Angela R, Neff, Norma F, Kalisky, Tomer, Dalerba, Piero, Treutlein, Barbara, Rothenberg, Michael E, Mburu, Francis M, Mantalas, Gary L +3 more·2014·Nature Methods
Cited by (709)
Items 501–600 of 709
- Targeted detection and quantitation of histone modifications from 1,000 cellsNebiyu Ali Abshiru, Jacek W. Sikora, Jeannie M. Camarillo, Juliette A. Morris, Philip Daniel Compton, Tak H. Lee, Yaseswini Neelamraju, Samuel Haddox, Caroline K. Sheridan, Martin P Carroll et al. · 2020 · PLoS ONE
- Non-linear Normalization for Non-UMI Single Cell RNA-SeqZhijin J. Wu, Kenong Su, Hao Wu · 2021 · Frontiers in Genetics
- Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promotersFatemeh Behjati Ardakani, Kathrin Kattler, Karl J. V. Nordström, Nina Gasparoni, Gilles Gasparoni, Sarah Fuchs, Anupam N. Sinha, Matthias Barann, Peter Ebert, Jonas Fischer et al. · 2018 · Epigenetics & Chromatin
- Integrated Fluidic Circuits for Single-Cell Omics and Multi-omics ApplicationsMark Lynch, Naveen Ramalingam · 2019 · Advances in experimental medicine and biology
- Not miR ‐ly micromanagers: the functions and regulatory networks of microRNAs in mammalian skinKent A. Riemondy, Jaimee Elizabeth Hoefert, Rui Yi · 2014 · Wiley Interdisciplinary Reviews - RNA
- PD-1 checkpoint blockade disrupts CD4 T cell regulated adaptive B cell tolerance to foreign antigensChad R. Dufaud, Andrew G. Shuparski, Brett Higgins, Louise J. McHeyzer‐Williams, Michael G. McHeyzer‐Williams · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- A Protocol for Revealing Oral Neutrophil Heterogeneity by Single-Cell Immune Profiling in Human SalivaSaibyasachi N. Choudhury, Mark A. Novotny, Brian D. Aevermann, Steven Lee, Aishwarya Mandava, Yu Qian, Richard H. Scheuermann, Marcelo Freire · 2020
- Maternal plasma RNA sequencingCees B.M. Oudejans · 2015 · Clinical Biochemistry
- MSIQ: Joint modeling of multiple RNA-seq samples for accurate isoform quantificationWei Vivian Li, Anqi Zhao, Shihua Zhang, Jingyi Jessica Li · 2018 · The Annals of Applied Statistics
- Restored UBE2C expression in islets promotes β-cell regeneration in mice by ubiquitinating PER1Hemin Jiang, Shuai Zheng, Yu Qian, Yuncai Zhou, Hao Dai, Yucheng Liang, Yunqiang He, Rui Gao, Hui Lv, Jie Zhang et al. · 2023 · Cellular and Molecular Life Sciences
- Non-mass spectrometric targeted single-cell metabolomicsHanjun Cheng, Yin Tang, Zhonghan Li, Zhili Guo, James R. Heath, Min Xue, Wei Wei · 2023 · TrAC Trends in Analytical Chemistry
- Single-Cell Transcriptome Analysis of Developing and Regenerating Spiral Ganglion NeuronsKelvin Y. Kwan · 2016 · Current Pharmacology Reports
- Lineage specification of early embryos and embryonic stem cells at the dawn of enabling technologiesGuangdun Peng, Patrick Tam, Naihe Jing · 2017 · National Science Review
- Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian TissuesJo Anne Stratton, Sarthak Sinha, Wisoo Shin, Elodie Labit, Tak‐Ho Chu, Prajay T. Shah, Rajiv Midha, Jeff A. Biernaskie · 2019 · Journal of Visualized Experiments
- Comparison of RNA isolation procedures for analysis of adult murine brain and spinal cord astrocytesKamil Sebastian Rosiewicz, Tadhg Crowley, Gesine Saher, Janis Kerkering, Marlen Alisch, Volker Siffrin · 2019 · Journal of Neuroscience Methods
- DTD: An R Package for Digital Tissue DeconvolutionMarian Schön, Jakob Simeth, Paul Heinrich, Franziska Görtler, Stefan Solbrig, Tilo Wettig B, Peter Josef Oefner, Michael Altenbuchinger, Rainer Spang · 2020 · Journal of Computational Biology
- Carbohydrate Accumulation and Differential Transcript Expression in Winter Wheat Lines with Different Levels of Snow Mold and Freezing Tolerance after Cold TreatmentErika B. Kruse, Samuel R. Revolinski, Jesse J. Aplin, Daniel Z. Skinner, Timothy D. Murray, Charles G. Edwards, Arron Hyrum Carter · 2020 · Plants
- Hematopoietic Stem Cell Requirement for Macrophage Regeneration Is Tissue SpecificDevon James Eddins, Astrid Kosters, Jeffrey Waters, Jasmine Sosa, Megan Phillips, Koshika Yadava, Leonore A. Herzenberg, Hedwich F. Kuipers, Eliver Ghosn · 2021 · The Journal of Immunology
- Recent Developments and Applications of Single-Cell RNA Sequencing Technology in Cell ClassificationSafir Ullah Khan, Munir Ullah Khan · 2021 · Journal of Biomedical Research & Environmental Sciences
- Aging causes changes in transcriptional noise across a diverse set of cell typesG. Edward Marti, Steven Chu, Stephen R. Quake · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Germination-Driven Modulation of Phenolic Compounds in Sorghum: Bioactivity and Gene ExpressionRaúl Ezerinho Salato, Hugo José Martins Carvalho, Janaína de Oliveira Melo, Marcio Masculino Schmiele · 2026 · Foods
- COMSE: analysis of single-cell RNA-seq data using community detection-based feature selectionQinhuan Luo, Yaozhu Chen, Xun Lan · 2024 · BMC Biology
- RoCK and ROI: single-cell transcriptomics with multiplexed enrichment of selected transcripts and region-specific sequencingGiulia Moro, Izaskun Mallona, Malwine Barz, Joël Maillard, Michael David Brügger, Hassan Fazilaty, Quentin Szabo, Tomáš Valenta, Kristina Handler, Fiona Kerlin et al. · 2025 · Nature Communications
- Insights into nuclear dynamics using live‐cell imaging approachesRachel B. Bigley, Alexander Y. Payumo, Jeffrey M. Alexander, Guo N. Huang · 2017 · WIREs Systems Biology and Medicine
- Going single but not solo with podocytes: potentials, limitations, and pitfalls of single-cell analysisMario Schiffer · 2017 · Kidney International
- SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolutionJingwan Wang, Shiying Li, Lingxi Chen, Shuai Cheng Li · 2022 · NAR Genomics and Bioinformatics
- BdLT-Seq as a barcode decay-based method to unravel lineage-linked transcriptome plasticityYelyzaveta Shlyakhtina, Bianca Bloechl, Maximiliano M. Portal · 2023 · Nature Communications
- Transcriptional Control of Stem and Progenitor PotentialDavid E. Muench, H. Leighton Grimes · 2015 · Current Stem Cell Reports
- Methods to edit T cells for cancer immunotherapyFrancesca Lucibello, Silvia Menegatti, Laurie Menger · 2019 · Methods in enzymology on CD-ROM/Methods in enzymology
- Genome-wide analysis of Claviceps paspali: insights into the secretome of the main species causing ergot disease in Paspalum sppH. Oberti, GERMAN C. SPANGENBERG, Noel O. I. Cogan, Rafael Reyno, Matías Feijoo, Sara Murchio, Marco Dalla Rizza · 2021 · BMC Genomics
- A Beginner’s Guide on Integrating *Omics Approaches to Study Marine Microbial Communities: Details and Discussions From Sample Collection to Bioinformatics AnalysisS. N. Wilms · 2021 · Frontiers in Marine Science
- GLDADec: marker-gene guided LDA modeling for bulk gene expression deconvolutionIori Azuma, Tadahaya Mizuno, Hiroyuki Kusuhara · 2024 · Briefings in Bioinformatics
- Optimised isolation method for RNA extraction suitable for RNA sequencing from feline teeth collected in a clinical setting and at post mortemSeungmee Lee, U. Trivedi, Craig I. Johnson, Colin Farquharson, Gurå Therese Bergkvist · 2018 · Veterinary Research Communications
- Scalable parametric encoding of multiple modalitiesDavid Banh, Alan Huang · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Single-Cell Genomics: Enabling the Functional Elucidation of Infectious Diseases in Multi-Cell GenomesShweta Sahni, Partha Chattopadhyay, Kriti Khare, Rajesh Pandey · 2021 · Pathogens
- Analysis of MicroRNA Regulation and Gene Expression Variability in Single Cell DataWendao Liu, Noam Shomron · 2022 · Journal of Personalized Medicine
- Aortic Cellular Heterogeneity in Health and Disease: Novel Insights Into Aortic Diseases From Single-Cell RNA Transcriptomic Data SetsTayla A. Gibson Hughes, Malathi S.I. Dona, Christopher Graeme Sobey, Alexander Ruvantha Pinto, Grant Raymond Drummond, Antony Vinh, Maria Jelinic · 2024 · Hypertension
- Bioinformatics approaches to single-blastomere transcriptomicsLeila Taher, Martin Johannes Pfeiffer, Georg Fuellen · 2014 · Molecular Human Reproduction
- From measuring noise toward integrated single-cell biologyPawel Paszek · 2014 · Frontiers in Genetics
- De novo transcriptome sequencing in Monsonia burkeana revealed putative genes for key metabolic pathways involved in tea quality and medicinal valueAdugna Abdi Woldesemayat, Khayalethu Ntushelo, David Mxolisi Modise · 2016 · 3 Biotech
- A short review of variants calling for single-cell-sequencing data with applicationsZhuo-Hui Wei, Chang Shu, Changsheng Zhang, Jingying Huang, Hongmin Cai · 2017 · The International Journal of Biochemistry & Cell Biology
- Spectral clustering of single cells using Siamese nerual network combined with improved affinity matrixHan-Jing Jiang, Yabing Huang, Qianpeng Li · 2022 · Briefings in Bioinformatics
- Quantification of mutant–allele expression at isoform level in cancer from RNA-seq dataWenjiang Deng, Tian Mou, Yudi Pawitan Y, Trung Nghia Vu · 2022 · NAR Genomics and Bioinformatics
- Characterizing nutritional phenotypes using experimental nutrigenomics: Is there nutrient‐specificity to different types of dietary stress?Catriona L. C. Jones, Aaron B. A. Shafer, Paul C. Frost · 2022 · Molecular Ecology
- Evaluating and Validating Sunflower Reference Genes for Q-PCR Studies Under High Temperature Condition.Masood Soltani Najafabadi, Nazanin Amirbakhtiar · 2023 · PubMed Central
- FEED: a feature selection method based on gene expression decomposition for single cell clusteringChao Zhang, Zhi-Wei Duan, Yunpei Xu, Jin Liu, Hong‐Dong Li · 2023 · Briefings in Bioinformatics
- Understanding hematopoiesis from a single-cell standpointKonstantinos D. Kokkaliaris, Daniel Lucas, Isabel Beerman, David G. Kent, Leïla Perié · 2016 · Experimental Hematology
- Single-Cell Genomics and EpigenomicsFátima Valdés‐Mora, Heather J Lee · 2016 · Series in bioengineering
- Defining the Phenotype and Function of Mammalian Spermatogonial Stem CellsKazadi Nadine Mutoji, Brian P. Hermann · 2017 · Springer eBooks
- Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model UncertaintyEhsan Hajiramezanali, Mahdi Imani, Ulisses Braga-Neto, Xiaoning Qian, Edward R. Dougherty · 2018 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
- Bacterial droplet-based single-cell RNA-seq reveals heterogeneity in bacterial populations and in response to antibiotic perturbationPeijun Ma, Haley M. Amemiya, Lorrie L. He, Shivam J. Gandhi, Robert Nicol, Roby P. Bhattacharyya, Christopher S. Smillie, Deborah Tan Hung · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Heterogeneity of bacterial host-pathogen interactions across biological scalesJuan Alfonso Redondo, Niharika Purkait, Pawel Paszek · 2026 · mSystems
- Complete Transcriptome Analysis by 5′-End Single-Cell RNA-Seq with Random PrimingTsukasa Kouno, Piero Carninci, Jay W. Shin · 2022 · Methods in molecular biology
- Differences in Oxygen-Induced Retinopathy Susceptibility Between Two Sprague Dawley Rat Vendors: A Comparison of Retinal TranscriptomesHaeyeon Lee, Mandkhai Molomjamts, Heidi Roehrich, Sydney Gudvangen, Chanel Asuncion, Michael Georgieff, Phu V. Tran, Linda K. McLoon, Ellen C. Ingolfsland · 2023 · Current Eye Research
- Integration of mass cytometry and single-cell RNA-sequencing of cells in bronchoalveolar lavageElizabeth Guinto, Sameeksha Chopra, I-Chih Kuo, Samuel B. Shin, Melina Messing, Chung Yan Cheung, Julia SW. Yang, Firoozeh V. Gerayeli, William Yip, Stephen B Milne et al. · 2025 · BioTechniques
- SpateCV: cross-modality alignment regularization of cell types improves spatial gene imputation for spatial transcriptomicsJiaqi Yuan, Junhua Yu, Qianbei Yi, Ye Zheng, Xu Peng, Wenbin Liu · 2025 · Journal of Translational Medicine
- Single-cell genomics: An overviewQichao Wang, Xianmin Zhu, Yun Feng, Zhigang Xue, Guoping Fan · 2013 · Frontiers in Biology
- Transcriptome Analysis at the Single‐Cell Level Using SMART TechnologyRachel N Fish, Magnolia L. Bostick, Alisa P. Lehman, Andrew A. Farmer · 2016 · Current Protocols in Molecular Biology
- Shrinkage estimation of gene interaction networks in single-cell RNA sequencing dataDuong H.T. Vo, Thomas Thorne · 2024 · BMC Bioinformatics
- Identification of Differential Gene Groups From Single-Cell Transcriptomes Using Network EntropyYanglan Gan, Shanshan Liang, Qingting Wei, Guobing Zou · 2020 · Frontiers in Cell and Developmental Biology
- Diagnosing Spermatogonial Stemness1F. Kent Hamra · 2015 · Biology of Reproduction
- Comparative transcriptomics reveal insights into the drought response of the three Panicum species P. bisulcatum, P. laetum and P. turgidumPeter Kotrade, Anahita Werner, Ingo Ebersberger, Wolfgang Brüggemann · 2020 · Plant Gene
- Patterns, Profiles, and Parsimony: Dissecting Transcriptional Signatures From Minimal Single-Cell RNA-Seq Output With SALSAOswaldo A. Lozoya, Kathryn S. McClelland, Brian N. Papas, Jian‐Liang Li, Humphrey Hung‐Chang Yao · 2020 · Frontiers in Genetics
- The Application of Single-Cell Sequencing in Dynamic TranscriptomesKenian Chen, Xiaomin Dong, Jiaqian Wu · 2015 · Translational bioinformatics
- From DNA to Data: Transcending Beyond the Double Helix and Demystifying the Genetic Alchemy of Life Through NGS to Empower Precision MedicineMuhammed Ali Siham H R · 2023 · Journal of Clinical and Medical Research
- Towards a Mechanistic Understanding of Epigenetic DynamicsJens Przybilla, Thimo Rohlf, Joerg Galle · 2015 · Translational bioinformatics
- Successful pregnancies in patients with hyperprolactinemia--clinical and endocrinological studies on mothers and babies.T. Goto, O Narita, Nobuhiko Suganuma, Michio Suzuki, Yutaka Tomoda, A Kuwayama, Naoki Kageyama · 1983 · PubMed
- Moore's Law in Single Cell TranscriptomicsValentine Svensson, Roser Vento‐Tormo, Sarah Amalia Teichmann · 2017 · arXiv (Cornell University)
- CLEAR: Coverage-based Limiting-cell Experiment Analysis for RNA-seqLogan A. Walker, Michael G. Sovic, Chi‐Ling Chiang, Eileen Y. Hu, Jiyeon K. Denninger, Xi Chen, Elizabeth D. Kirby, John C. Byrd, Natarajan Muthusamy, Ralf A. Bundschuh et al. · 2018 · arXiv (Cornell University)
- Comparative analysis of sequencing technologies platforms for single-cell transcriptomicsKedar Nath Natarajan, Zhichao Miao, Miaomiao Jiang, Xiaoyun Huang, Hongpo Zhou, Jiarui Xie, Chunqing Wang, Shishang Qin, Zhikun Zhao, Liang Li Wu et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing v1Hadas Keren Shaul, Hadas Keren‐Shaul, Ephraim Kenigsberg, Diego Adhemar Jaitin, Eyal David, Franziska Paul, Amos Tanay, Ido Amit · 2019
- p-clustval: a novel $$p$$-adic approach for enhanced clustering of high-dimensional single-cell RNASeq dataParichit Sharma, Sarthak R. Mishra, Hasan Kurban, Mehmet M Dalkilic · 2025 · International Journal of Data Science and Analytics
- Base editing and nanoparticle transfection of airway cell types essential for treatment of cystic fibrosisErin W. Kavanagh, Anya T. Joynt, A. Pion, Alice C. Eastman, Alianna I. Parr, K. Starego, Manav Jain, Sydney R. Shannon, Edwin Yoo, Gregory A. Newby et al. · 2026 · JCI Insight
- Single-cell sequencing in molecular diagnostics: Transformative yet untapped potentialDuaa Elshiekh, Nour Farchoukh, Reema El Hassan, Sara K. Al-Marzooqi, Waad Rashid Aldosari, Haissam Abou-Saleh, Amal Al-Haidose, Hatem Zayed, Atiyeh M. Abdallah · 2025 · Frontiers in Genetics
- Stem cell control in the lung by an autocrine injury-activated Igf complexYue Zhang, Youcef Ouadah, Yin Liu, Maya E. Kumar, Makenna M. Morck, Mark A. Krasnow · 2026 · Science
- Single-Cell Phenotypic Screening in Inverse Metabolic EngineeringAndreas E. Vasdekis, Gregory N Stephanopoulos · 2016 · Springer eBooks
- Microbial Diversities During Chinese Liquor FermentationsXiaowei Zheng, Bei‐Zhong Han, Ziyuan Ding, Xinyi Chen · 2023 · Springer eBooks
- Contrastive Representation Learning for Multimodal Single-Cell RNA-Seq Data IntegrationVishnu Vardhan Kosuru, Sree Virajitha Ramaraju, Sri Harshitha Anantatmula, Tricha Anjali · 2024 · International Conference on Electronics, Communication and Aerospace Technology (ICECA)
- Heterogeneity of the tumor immune cell microenvironment revealed by single-cell sequencing in head and neck cancerChunhong Li, Jia Liao, Bo Chen, Qiang Wang · 2025 · Critical Reviews in Oncology/Hematology
- Single-Cell Transcriptomics in Spinal Cord Studies: Progress and PerspectivesMaiweilan Maihemuti, Mst. Afsana Mimi, S. M. Sohag, Md. Mahmudul Hasan · 2025 · BioChem
- Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian TissuesJo Anne Stratton, Sarthak Sinha, Wisoo Shin, Elodie Labit, Tak‐Ho Chu, Prajay T. Shah, Rajiv Midha, Jeff A. Biernaskie · 2019 · Journal of Visualized Experiments
- Progress in genomics according to bingo: 2013 editionKonrad J. Karczewski · 2013 · Genome biology
- Eukaryotic Single-Cell mRNA SequencingKenneth J. Livak · 2016 · Springer eBooks
- Preparation of Low‐Input and Ligation‐Free ChIP‐seq Libraries Using Template‐Switching TechnologyNathalie Bolduc, Alisa P. Lehman, Andrew A. Farmer · 2016 · Current Protocols in Molecular Biology
- Colony Lysate Arrays for Proteomic Profiling of Drug-Tolerant Persisters of Cancer CellKohei Kume, Satoshi Nishizuka · 2017 · Analytical Chemistry
- Varying dietary protein and fat elicits differential transcriptomic expression within stress response pathways in preweaned Holstein heifersConnor E. Owens, A.J. Geiger, R.M. Akers, Rebecca Cockrum · 2018 · Journal of Dairy Science
- Single-Cell DNA-Seq and RNA-Seq in Cancer Using the C1 SystemMasahide Seki, Ayako Suzuki, Sarun Sereewattanawoot, Yutaka Suzuki · 2019 · Advances in experimental medicine and biology
- Clustering single-cell RNA sequencing data by multi-view latent embedding learningYilong Lin, Guanhua Zou · 2021 · International Conference on Computer Information Science and Artificial Intelligence (CISAI)
- Gene expression variability in long-term survivors of childhood cancer and cancer-free controls in response to ionizing irradiationCaine Lucas Grandt, Lara Kim Brackmann, Ronja Foraita, Heike Schwarz, Willempje Hummel-Bartenschlager, Thomas Hankeln, Christiane Kraemer, Sebastian Zahnreich, Philipp Drees, Johanna Mirsch et al. · 2023 · Molecular Medicine
- Multi‐Tissue Multi‐Omics Nutrigenomics Indicates Context‐Specific Effects of Docosahexaenoic Acid on Rat BrainGuanglin Zhang, Qingying Meng, Montgomery Blencowe, Rahul Agrawal, Fernando Gómez‐Pinilla, Xia Yang · 2020 · Molecular Nutrition & Food Research
- Integrative analysis of single cell expression data reveals distinct regulatory states in bidirectional promotersFatemeh Behjati Ardakani, Kathrin Kattler, Karl J. V. Nordström, Nina Gasparoni, Gilles Gasparoni, Sarah Fuchs, Anupam N. Sinha, Matthias Barann, Peter Ebert, Jonas Fischer et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Comprehensive benchmarking of single cell RNA sequencing technologies for characterizing cellular perturbationKaren Verboom, Alemu Takele Assefa, Nurten Yigit, Jasper Anckaert, Niels Vandamme, Dries Rombaut, Yvan Saeys, Olivier Thas, Frank Speleman, Kaat Durinck et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Machine Learning-Assisted Identification of Factors Contributing to the Technical Variability Between Bulk and Single-Cell RNA-Seq ExperimentsSofya Lipnitskaya, Yang Shen, Stefan Legewie, Holger Klein, Kolja Becker · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- SpatialScope: A unified approach for integrating spatial and single-cell transcriptomics data using deep generative modelsXiaomeng Wan, Jiashun Xiao, Sindy Sing Ting Tam, Mingxuan Cai, Ryohichi Sugimura, Yang Wang, Xiang Wan, Zhixiang Lin, Angela Ruohao Wu, Can Yang · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Time-course full profiling of circulating miRNAs in neurologically deceased organ donors: a proof of concept study to understand the onset of the cytokine stormAndrée‐Anne Clément, Daphnée Lamarche, Marie-Hélène Masse, Cécilia Légaré, Lee‐Hwa Tai, Laurence Fleury-Deland, Marie‐Claude Battista, Luigi Bouchard, Frédérick D’Aragon · 2022 · Epigenetics
- Microfluidics in GenomicsShabroz Alam, Juveriya Israr, Ajay Kumar · 2024 · Springer eBooks
- Cell cycle checkpoint factor p15Ink4b is a novel regulator of osteoclast differentiationShunya Tsuji, Sora Mizukami, Akihiko Sakamoto, Kenji Takemoto, Tetsuya Seto, Kazuya Uehara, Kiminori Yukata, Takashi Sakai, Keiko Iwaisako, Norihiko Takeda et al. · 2025 · Scientific Reports
- Patterns of Associations with Epidemiologic Factors by High-Grade Serous Ovarian Cancer Gene Expression SubtypesLindsay Jane Collin, Kara L. Cushing‐Haugen, Kathryn L. Terry, Ellen L. Goode, Anna H. Wu, Holly Ruth Harris, Naoko Sasamoto, Daniel William Cramer, Francesmary Modugno, Esther Elishaev et al. · 2025 · Cancer Epidemiology Biomarkers & Prevention
- Harp: data harmonization for computational tissue deconvolution across diverse transcriptomics platformsZahra Nozari, Paul Hüttl, Jakob Simeth, Marian Schön, James A. Hutchinson, Rainer Spang · 2025 · Bioinformatics
- Bayesian Modeling of Gene Regulatory Networks in Colorectal Cancer OrganoidsHuijun Gao, Dongxu Lei, Songlin Zhuang · 2025 · IEEE Transactions on Cybernetics