Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
He, Housheng Hansen, Meyer, Clifford A, Hu, Sheng'en Shawn, Chen, Mei-Wei, Zang, Chongzhi, Liu, Yin, Rao, Prakash K, Fei, Teng +4 more·2014·Nature Methods
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- Tracking Transcription Factors on the Genome by their DNase-seq FootprintsGalip Gürkan Yardımcı · 2014 · DukeSpace (Duke University)
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- Mapping Protein Occupancy on DNA with an Unnatural Cytosine ModificationRuiyao Zhu, Christian E. Loo, Christina M. Hurley, Jared B. Parker, Rahul M. Kohli · 2026 · ACS Chemical Biology
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- Two essential criteria for transcription factor footprint discovery using V-plotQifan Zhang, Chenhuan Xu · 2026 · Molecular Systems Biology
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