Highly multiplexed simultaneous detection of RNAs and proteins in single cells

Cited by (343)

Items 101–200 of 343

1. Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
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2. Silver nanoparticles for the detection of cell surface antigens in mass cytometry
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3. A Dual‐Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain‐like Proteases of SARS‐CoV‐2‐Infected Cells for Accurate Detection and Rapid Inhibitor Screening
   Yong Cheng, Raina M. Borum, Alex E. Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony John O’Donoghue, Aaron F. Carlin, Jesse V. Jokerst · 2021 · Angewandte Chemie International Edition
4. A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies
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5. Micro/nanofluidics-enabled single-cell biochemical analysis
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6. Optimization of mass cytometry sample cryopreservation after staining
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7. A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment
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8. Lanthanide‐Coordinated Semiconducting Polymer Dots Used for Flow Cytometry and Mass Cytometry
   Xu Wu, Quinn DeGottardi, I‐Che Wu, Jiangbo Yu, Li Jun Wu, Fangmao Ye, Chun‐Ting Kuo, William W. Kwok, Daniel T. Chiu · 2017 · Angewandte Chemie International Edition
9. Preclinical assessment of antiviral combination therapy in a genetically humanized mouse model for hepatitis delta virus infection
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10. The Future of Biomarkers in Veterinary Medicine: Emerging Approaches and Associated Challenges
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11. Progress in single-cell multimodal sequencing and multi-omics data integration
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12. Label-Free DNA Assay by Metal Stable Isotope Detection
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13. Single nanoparticle analysis by ICPMS: a potential tool for bioassay
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14. Single‐Cell Multi‐Omics and Its Prospective Application in Cancer Biology
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15. Proteomics approaches to characterize the immune responses in cancer
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16. Advances in Mass Spectrometry-Based Single Cell Analysis
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17. CellCycleTRACER accounts for cell cycle and volume in mass cytometry data
    Marianna Rapsomaniki, Xiao‐Kang Lun, Stefan Woerner, Marco Laumanns, Bernd Bodenmiller, María Rodríguez Martínez · 2018 · Nature Communications
18. Computational Methods for Single-Cell Imaging and Omics Data Integration
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19. Neuroinflammation — using big data to inform clinical practice
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20. New Structure Mass Tag based on Zr‐NMOF for Multiparameter and Sensitive Single‐Cell Interrogating in Mass Cytometry
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21. Signal amplification by cyclic extension enables high-sensitivity single-cell mass cytometry
    Xiao‐Kang Lun, Kuanwei Sheng, Xueyang Yu, Ching Yeung Lam, Gokul Gowri, Matthew P. Serrata, Yunhao Zhai, Hanquan Su, Jingyi Luan, Youngeun Kim et al. · 2024 · Nature Biotechnology
22. High-throughput platforms for machine learning-guided lipid nanoparticle design
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23. Single-cell technologies — studying rheumatic diseases one cell at a time
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24. Combining Qdot Nanotechnology and DNA Nanotechnology for Sensitive Single‐Cell Imaging
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25. Estimation methods for heterogeneous cell population models in systems biology
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26. Analysis of Host Responses to Hepatitis B and Delta Viral Infections in a Micro‐scalable Hepatic Co‐culture System
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27. A connectome is not enough – what is still needed to understand the brain of<i>Drosophila</i>?
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28. More Than a Light Switch: Engineering Unconventional Fluorescent Configurations for Biological Sensing
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29. High-Fidelity Single Molecule Quantification in a Flow Cytometer Using Multiparametric Optical Analysis
    Lucas D. Smith, Yang Liu, Mohammad U. Zahid, Taylor D. Canady, Liang Wang, Manish Kohli, Brian T. Cunningham, Andrew M. Smith · 2020 · ACS Nano
30. Protein‐Mediated Suppression of Rolling Circle Amplification for Biosensing with an Aptamer‐Containing DNA Primer
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31. Assay of Genome-Wide Transcriptome and Secreted Proteins on the Same Single Immune Cells by Microfluidics and RNA Sequencing
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32. Parallel analysis of tri-molecular biosynthesis with cell identity and function in single cells
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33. Target-Induced Cascade Amplification for Homogeneous Virus Detection
    Mingyuan Du, Guobin Mao, Songbai Tian, Yucheng Liu, Jiao Zheng, Xianliang Ke, Zhenhua Zheng, Hanzhong Wang, Xinghu Ji, Zhike He · 2019 · Analytical Chemistry
34. Multiplexed profiling of RNA and protein expression signatures in individual cells using flow or mass cytometry
    Andrew D. Duckworth, Pier Federico Gherardini, Martina Sýkorová, Faten Yasin, Garry P. Nolan, Joseph R. Slupsky, Nagesh Kalakonda · 2019 · Nature Protocols
35. Identification of genetic variants that impact gene co-expression relationships using large-scale single-cell data
    Shuang Li, Katharina Schmid, Dylan H. de Vries, Maryna Korshevniuk, Corinna Losert, Roy Oelen, Irene V. van Blokland, Hilde E. Groot, Morris A. Swertz, Pim van der Harst et al. · 2023 · Genome biology
36. Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection
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37. Programmable Chromosome Painting with Oligopaints
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38. Multiplex DNA Walking Machines for Lung Cancer-Associated miRNAs
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39. Single-cell RNA sequencing to track novel perspectives in HSC heterogeneity
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40. Maximum Entropy Framework for Predictive Inference of Cell Population Heterogeneity and Responses in Signaling Networks
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41. Application and utility of mass cytometry in vaccine development
    Patrick M. Reeves, Ann E. Sluder, Susan Raju Paul, Anja Scholzen, Satoshi Kashiwagi, Mark C. Poznansky · 2017 · The FASEB Journal
42. The CRISPR-Cas13a Gemini System for noncontiguous target RNA activation
    Hongrui Zhao, Yan Sheng, Tenghua Zhang, Shujun Zhou, Yuqing Zhu, Feiyang Qian, Meiru Liu, Weixue Xu, Dengsong Zhang, Jiaming Hu · 2024 · Nature Communications
43. Single-cell protein-mRNA correlation analysis enabled by multiplexed dual-analyte co-detection
    Haibiao Gong, Xiaohui Wang, Benjamin P. Liu, Stéphane C. Boutet, Ilona N. Holcomb, Gajalakshmi Dakshinamoorthy, Aik Teong Ooi, Chad D. Sanada, Gang Sun, Ramesh Ramakrishnan · 2017 · Scientific Reports
44. Spatial mapping of cancer tissues by OMICS technologies
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45. Integration of sample preparation and analysis into an optofluidic chip for multi-target disease detection
    Gopikrishnan G. Meena, Aadhar Jain, Joshua W. Parks, Alexandra Stambaugh, Jean L. Patterson, Aaron R. Hawkins, Holger Schmidt · 2018 · Lab on a Chip
46. Key steps and methods in the experimental design and data analysis of highly multi-parametric flow and mass cytometry
    Paulina Rybakowska, Marta Eugenia Alarcón-Riquelme, Concepción Marañón · 2020 · Computational and Structural Biotechnology Journal
47. Spatial transcriptomics: recent developments and insights in respiratory research
    Wenjia Wang, Liuxi Chu, Liyong He, Ming‐Jing Zhang, Kaitong Dang, Chen Gao, Qinyu Ge, Zhouguang Wang, Xiangwei Zhao · 2023 · Military Medical Research
48. Gene expression and protein abundance: Just how associated are these molecular traits?
    Anahita Samih, Maurício Alexander de Moura Ferreira, Zoran Nikoloski · 2025 · Biotechnology Advances
49. Beyond the message: advantages of snapshot proteomics with single‐cell mass cytometry in solid tumors
    Akshitkumar M. Mistry, Allison R. Greenplate, Rebecca A. Ihrie, Jonathan Michael Irish · 2018 · FEBS Journal
50. Single‐Cell Immune Profiling in Coronary Artery Disease: The Role of State‐of‐the‐Art Immunophenotyping With Mass Cytometry in the Diagnosis of Atherosclerosis
    Katharine A. Kott, Stephen Thomas Vernon, Thomas Hansen, Macha de Dreu, Souvik Kumar Das, Joseph E. Powell, Barbara Fazekas de St Groth, Belinda A. Di Bartolo, Helen Marie McGuire, Gemma Alexandra Figtree · 2020 · Journal of the American Heart Association
51. An update on stem cell biology and engineering for brain development
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52. Epigenomic Views of Innate Lymphoid Cells
    Giuseppe Sciumè, Han‐Yu Shih, Yohei Mikami, John J. O’Shea · 2017 · Frontiers in Immunology
53. A β-galactosidase probe for the detection of cellular senescence by mass cytometry
    Matthew Anthony Lumba, Lisa M. Willis, S. Santra, R. Rana, Luana Schito, Sergio Rey, Bradly G. Wouters, Mark Nitz · 2017 · Organic & Biomolecular Chemistry
54. The impact of single-cell RNA sequencing on understanding the functional organization of the immune system
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55. High-throughput single-cell analysis of nanoparticle-cell interactions
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56. Micro/extended-nano sampling interface from a living single cell
    Lie Lin, Kazuma Mawatari, Kyojiro Morikawa, Yuriy Pihosh, Ayumi Yoshizaki, Takehiko Kitamori · 2017 · The Analyst
57. Immunophenotyping by Mass Cytometry
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58. Single-cell omics: A new direction for functional genetic research in human diseases and animal models
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59. Einzelzell‐Massenspektrometrie zur Untersuchung zellulärer Heterogenität
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60. Epigenetic Regulations in Mammalian Cells: Roles and Profiling Techniques
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61. Assessing heterogeneity among single embryos and single blastomeres using open microfluidic design
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62. High‐Dimensional Single‐Cell Analysis with Mass Cytometry
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63. Phenotyping of tumor infiltrating immune cells using mass-cytometry (CyTOF)
    Pauline Maby, Aurélien Corneau, Jérôme Galon · 2020 · Methods in enzymology on CD-ROM/Methods in enzymology
64. Understanding health disparities
    David K. Stevenson, Ronald J. Wong, Nima Aghaeepour, Martin S. Angst, Gary Lee Darmstadt, Daniel B. DiGiulio, Maurice L. Druzin, Brice L Gaudilliere, Ronald S. Gibbs, Jeffrey B. Gould et al. · 2018 · Journal of Perinatology
65. A sensitive flow cytometric method for multi-parametric analysis of microRNA, messenger RNA and protein in single cells
    Chunfai Lai, Dariusz T. Stepniak, Leslie Sias, Castle J. Funatake · 2017 · Methods
66. Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
    Naveen Ramalingam, Brian Fowler, Lukasz Szpankowski, Anne A. Leyrat, Kyle W. Hukari, Myo Thu Maung, Wiganda Yorza, Michael Norris, Chris Cesar, Joe Shuga et al. · 2016 · Frontiers in Bioengineering and Biotechnology
67. Implementation of a Multiplex and Quantitative Proteomics Platform for Assessing Protein Lysates Using DNA-Barcoded Antibodies
    Jin‐Ho Lee, Gary K. Geiss, Gokhan Demirkan, Christopher P. Vellano, Brian Filanoski, Yiling Lu, Zhenlin Ju, Shuangxing Yu, Huifang Guo, Lisa Y. Bogatzki et al. · 2018 · Molecular & Cellular Proteomics
68. The biology of the cell – insights from mass cytometry
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69. Microfluidic single‐cell multiomics analysis
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70. Simultaneous Detection of Protein and mRNA in Jurkat and KG‐1a Cells by Mass Cytometry
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71. Integrated measurement of intracellular proteins and transcripts in single cells
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72. Network Inference from Single-Cell Transcriptomic Data
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73. Extended live-cell barcoding approach for multiplexed mass cytometry
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74. Current and future perspectives of single-cell multi-omics technologies in cardiovascular research
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75. Systematic inference identifies a major source of heterogeneity in cell signaling dynamics: The rate-limiting step number
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76. Single-Cell Technologies Applied to HIV-1 Research: Reaching Maturity
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77. Integrating Micro and Nano Technologies for Cell Engineering and Analysis: Toward the Next Generation of Cell Therapy Workflows
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78. In Situ Visualization of hERG Potassium Channel via Dual Signal Amplification
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79. Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting
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80. Single-cell transcriptomics is revolutionizing the improvement of plant biotechnology research: recent advances and future opportunities
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81. Extending the dynamic range of biomarker quantification through molecular equalization
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82. One-Shot Single-Cell Proteome and Metabolome Analysis Strategy for the Same Single Cell
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83. Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis
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84. Staggered starts in the race to T cell activation
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85. Advances in Microfluidic Single-Cell RNA Sequencing and Spatial Transcriptomics
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86. Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis
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87. Dissecting the spatial bone marrow microenvironment of hematopoietic stem cells
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88. A gapmer aptamer nanobiosensor for real-time monitoring of transcription and translation in single cells
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89. The Tumor Profiler Study: Integrated, multi-omic, functional tumor profiling for clinical decision support
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90. High‐throughput precision measurement of subcellular localization in single cells
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91. Multimodal single-cell approaches shed light on T cell heterogeneity
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92. Non-coding antisense transcripts: fine regulation of gene expression in cancer
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93. Ultrasensitive detection of SARS-CoV-2 RNA and antigen using single-molecule optofluidic chip
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94. Unified Probability Distribution and Dynamics of Lead Contents in Human Erythrocytes Revealed by Single-Cell Analysis
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95. Single-cell sequencing and its applications in bladder cancer
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96. Integration of single‐cell transcriptome and proteome technologies: Toward spatial resolution levels
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97. Cross‐Platform DNA Encoding for Single‐Cell Imaging of Gene Expression
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98. Ratiometric Barcoding for Mass Cytometry
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99. Functional patient-derived cellular models for neuropsychiatric drug discovery
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100. Binary detection of protein and nucleic acid enabled cancer diagnosis through branched hybridization chain reaction
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