Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases

Cited by (346)

Items 301–346 of 346

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6. Additional file 13 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
   Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
7. Additional file 16 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
   Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
8. Additional file 7 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
   Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
9. Additional file 5 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
   Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
10. Additional file 2 of RSNET: inferring gene regulatory networks by a redundancy silencing and network enhancement technique
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11. Additional file 3 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
12. Additional file 9 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
13. Additional file 8 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
14. Additional file 1 of RSNET: inferring gene regulatory networks by a redundancy silencing and network enhancement technique
    Jiang, Xiaohan, Zhang, Xiujun · 2022 · Figshare
15. Additional file 1 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
16. Additional file 4 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
17. Additional file 3 of RSNET: inferring gene regulatory networks by a redundancy silencing and network enhancement technique
    Jiang, Xiaohan, Zhang, Xiujun · 2022 · Figshare
18. Additional file 12 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
19. Additional file 21 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
20. Additional file 15 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
21. Additional file 17 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
22. Additional file 10 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
23. Additional file 4 of Comparison of confound adjustment methods in the construction of gene co-expression networks
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24. Additional file 20 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
25. Additional file 8 of Comparison of confound adjustment methods in the construction of gene co-expression networks
    Alanna C. Cote, Hannah E. Young, Huckins, Laura M. · 2022 · Figshare
26. Additional file 2 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
27. Additional file 6 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
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29. Additional file 14 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
30. Additional file 18 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
31. Additional file 3 of scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks
    Jin, Ting, Rehani, Peter, Mufang Ying, Huang, Jiawei, Liu, Shuang, Panos Roussos, Wang, Daifeng · 2021 · Figshare
32. Additional file 19 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
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33. Additional file 1 of De-obstruction of bladder outlet in humans reverses organ remodelling by normalizing the expression of key transcription factors
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34. Additional file 11 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
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35. Integrative analysis of CD8 T-cell responses in the context of adaptive immunity to acute Hepatitis C virus infection
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36. Characterization of the FGFR3 regulatory network in bladder cancer
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37. Approaches to explore multiplex biological networks and application to study premature aging diseases
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38. Analysis and integration of heterogeneous large-scale genomics data : application to B cell differentiation and follicular lymphoma non coding mutations
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40. Combinatorial transcription factor interactions drive modular gene regulatory networks
    Jialei Duan, B Li, Kartik Kulkarni, Gabriela Orquera-Tornakian, Daryl Barth, L H Wang, Vrushali Pandit, Joel Liou, Nikhil V Munshi, Gary C. Hon · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
41. 189Chapter 10 Artificial Intelligence: Transforming the Landscape of Computational Biology
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42. Combinatorial transcription factor interactions drive modular gene regulatory networks
    Jialei Duan, Boxun Li, Kartik Kulkarni, Gabriela Orquera-Tornakian, Daryl Barth, L H Wang, Vrushali Pandit, Joel Liou, Nikhil V Munshi, Gary C. Hon · 2026 · eLife
43. Combinatorial transcription factor interactions drive modular gene regulatory networks
    Jialei Duan, Boxun Li, Kartik Kulkarni, Gabriela Orquera-Tornakian, Daryl Barth, L H Wang, Vrushali Pandit, Joel Liou, Nikhil V Munshi, Gary C. Hon · 2026 · eLife
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45. Single-Cell Omics to Uncover Cell-Type-Specific Gene Regulatory Networks Driving Mucilage Production in Specialized Roots
    Rafael E. Venado, Marina Kotvanova, Chandrani Kumari, Prakriti Garg, Saptarshi Pyne, Rubens Diogo, Tess Kern, Christopher Dervinis, Wendell J. Pereira, Matias Kirst et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
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