Cited by 157Hearing, Cochlea, Tinnitus, GeneticsPluripotent Stem Cells ResearchNeurogenesis and neuroplasticity mechanisms

3D mouse embryonic stem cell culture for generating inner ear organoids

Open access
Koehler, Karl R, Hashino, Eri·2014·Nature Protocols

Abstract

This protocol describes a culture system in which inner-ear sensory tissue is produced from mouse embryonic stem (ES) cells under chemically defined conditions. This model is amenable to basic and translational investigations into inner ear biology and regeneration. In this protocol, mouse ES cells are aggregated in 96-well plates in medium containing extracellular matrix proteins to promote epithelialization. During the first 14 d, a series of precisely timed protein and small-molecule treatments sequentially induce epithelia that represent the mouse embryonic non-neural ectoderm, preplacodal ectoderm and otic vesicle epithelia. Ultimately, these tissues develop into cysts with a pseudostratified epithelium containing inner ear hair cells and supporting cells after 16-20 d. Concurrently, sensory-like neurons generate synapse-like structures with the derived hair cells. We have designated the stem cell-derived epithelia harboring hair cells, supporting cells and sensory-like neurons as inner ear organoids. This method provides a reproducible and scalable means to generate inner ear sensory tissue in vitro.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/nprot.2014.100

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • In the 3D mESC culture, a heterogeneous population of mesenchymal and neural cells is also generated.

    “In the process of culture, a heterogeneous population of mesenchymal and neural cells is also generated (Koehler and Hashino, 2014; Koehler et al., 2013).”

    From Hair Follicle Development in Mouse Pluripotent Stem Cell-Derived Skin Organoids (2018) · cites this paper as Koehler and Hashino, 2014

  • A 3D mouse embryonic stem cell culture can produce cranial surface epithelia (non-neural ectoderm), a precursor tissue of the skin epidermis.

    “Recently, we developed a three-dimensional (3D) mouse embryonic stem cell (mESC) culture capable of producing cranial surface epithelia (also known as non-neural ectoderm), a precursor tissue of the skin epidermis.”

    From Hair Follicle Development in Mouse Pluripotent Stem Cell-Derived Skin Organoids (2018) · cites this paper as Koehler and Hashino, 2014

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 66

  1. [1]Sasai Y Cytosystems dynamics in self-organization of tissue architecture. Nature 493, 318– 326 (2013). 23325214
  2. [2]Sasai Y, Eiraku M & Suga H In vitro organogenesis in three dimensions: self-organising stem cells. Development (Cambridge, England) 139, 4111– 4121 (2012). 23093423
  3. [3]Koehler KR, Mikosz AM, Molosh AI, Patel D & Hashino E Generation of inner ear sensory epithelia from pluripotent stem cells in 3D culture. Nature 500, 217– 221 (2013). 23842490 PMC3739998
  4. [4]Gonzalez-Cordero A Photoreceptor precursors derived from three-dimensional embryonic stem cell cultures integrate and mature within adult degenerate retina. Nature Biotechnology 31, 741– 747 (2013). PMC3826328 23873086
  5. [5]Eiraku M Self-organizing optic-cup morphogenesis in three-dimensional culture. Nature 472, 51– 56 (2011). 21475194
  6. [7]Eiraku M & Sasai Y Mouse embryonic stem cell culture for generation of three-dimensional retinal and cortical tissues. Nature Protocols 7, 69– 79 (2012). 22179593
  7. [8]Nakano T Self-Formation of Optic Cups and Storable Stratified Neural Retina from Human ESCs. Cell Stem Cell 10, 771– 785 (2012). 22704518
  8. [9]Suga H Self-formation of functional adenohypophysis in three-dimensional culture. Nature 480, 57– 62 (2011). 22080957
  9. [10]Nasu M Robust Formation and Maintenance of Continuous Stratified Cortical Neuroepithelium by Laminin-Containing Matrix in Mouse ES Cell Culture. PLoS ONE 7, e53024 (2012). 23300850 PMC3534089
  10. [12]Spence JR Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro. Nature 470, 105– 109 (2010). 21151107 PMC3033971
  11. [13]McCracken KW, Howell JC, Wells JM & Spence JR Generating human intestinal tissue from pluripotent stem cells in vitro. Nature Protocols 6, 1920– 1928 (2011). 22082986 PMC3896236
  12. [15]Huch M In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration. Nature 494, 247– 250 (2013). 23354049 PMC3634804
  13. [16]Li L Location of transient ectodermal progenitor potential in mouse development. Development 140, 4533– 4543 (2013). 24131634
  14. [17]Cajal M Clonal and molecular analysis of the prospective anterior neural boundary in the mouse embryo. Development 139, 423– 436 (2012). 22186731 PMC3243100
  15. [18]Beddington SP An autoradiographic analysis of the potency of embryonic ectoderm in the 8th day postimplantation mouse embryo. J Embryol Exp Morphol 64, 87– 104 (1981). 7310311
  16. [19]Beddington RS An autoradiographic analysis of tissue potency in different regions of the embryonic ectoderm during gastrulation in the mouse. J Embryol Exp Morphol 69, 265– 285 (1982). 7119671
  17. [20]Wilson PA & Hemmati-Brivanlou A Induction of epidermis and inhibition of neural fate by Bmp-4. Nature 376, 331– 333 (1995). 7630398
  18. [21]Wilson PA, Lagna G, Suzuki A & Hemmati-Brivanlou A Concentration-dependent patterning of the Xenopus ectoderm by BMP4 and its signal transducer Smad1. Development (Cambridge, England) 124, 3177– 3184 (1997). 9272958
  19. [22]Kwon H-J, Bhat N, Sweet EM, Cornell RA & Riley BB Identification of early requirements for preplacodal ectoderm and sensory organ development. PLoS genetics 6, e1001133 (2010). 20885782 PMC2944784
  20. [23]Barth KA Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development (Cambridge, England) 126, 4977– 4987 (1999). 10529416
  21. [24]Neave B, Holder N & Patient R A graded response to BMP-4 spatially coordinates patterning of the mesoderm and ectoderm in the zebrafish. Mechanisms of development 62, 183– 195 (1997). 9152010
  22. [25]Harvey NT Response to BMP4 signalling during ES cell differentiation defines intermediates of the ectoderm lineage. Journal of cell science 123, 1796– 1804 (2010). 20427322
  23. [26]Pieper M, Ahrens K, Rink E, Peter A & Schlosser G Differential distribution of competence for panplacodal and neural crest induction to non-neural and neural ectoderm. Development (Cambridge, England) 139, 1175– 1187 (2012). 22318231
  24. [27]Reichert S, Randall RA & Hill CS A BMP regulatory network controls ectodermal cell fate decisions at the neural plate border. Development (Cambridge, England) 140, 4435– 4444 (2013). 24089471
  25. [28]Grocott T, Tambalo M & Streit A The peripheral sensory nervous system in the vertebrate head: A gene regulatory perspective. Developmental biology 370, 3– 23 (2012). 22790010
  26. [29]Ahrens K & Schlosser G Tissues and signals involved in the induction of placodal Six1 expression in Xenopus laevis. Developmental biology 288, 40– 59 (2005). 16271713
  27. [30]Brugmann SA, Pandur PD, Kenyon KL, Pignoni F & Moody SA Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and repressor. Development (Cambridge, England) 131, 5871– 5881 (2004). 15525662
  28. [31]Litsiou A, Hanson S & Streit A A balance of FGF, BMP and WNT signalling positions the future placode territory in the head. Development (Cambridge, England) 132, 4051– 4062 (2005). 16093325
  29. [32]Schlosser G Induction and specification of cranial placodes. Developmental biology 294, 303– 351 (2006). 16677629
  30. [33]Patthey C & Gunhaga L Specification and regionalisation of the neural plate border. The European journal of neuroscience 34, 1516– 1528 (2011). 22103410
  31. [34]Bhattacharyya S & Bronner-Fraser M Competence, specification and commitment to an olfactory placode fate. Development (Cambridge, England) 135, 4165– 4177 (2008). 19029046
  32. [35]Baker CV, Stark MR, Marcelle C & Bronner-Fraser M Competence, specification and induction of Pax-3 in the trigeminal placode. Development (Cambridge, England) 126, 147– 156 (1999). 9834194
  33. [36]Ladher RK, O’Neill P & Begbie J From shared lineage to distinct functions: the development of the inner ear and epibranchial placodes. Development (Cambridge, England) 137, 1777– 1785 (2010). 20460364
  34. [37]Wright TJ & Mansour SL Fgf3 and Fgf10 are required for mouse otic placode induction. Development (Cambridge, England) 130, 3379– 3390 (2003). 12810586
  35. [38]Urness LD, Paxton CN, Wang X, Schoenwolf GC & Mansour SL FGF signaling regulates otic placode induction and refinement by controlling both ectodermal target genes and hindbrain Wnt8a. Developmental biology 340, 595– 604 (2010). 20171206 PMC2854211
  36. [39]Ohyama T, Mohamed OA, Taketo MM, Dufort D & Groves AK Wnt signals mediate a fate decision between otic placode and epidermis. Development (Cambridge, England) 133, 865– 875 (2006). 16452098
  37. [40]Riccomagno MM, Takada S & Epstein DJ Wnt-dependent regulation of inner ear morphogenesis is balanced by the opposing and supporting roles of Shh. Genes & Development 19, 1612– 1623 (2005). 15961523 PMC1172066
  38. [41]Freter S, Muta Y, Mak S-S, Rinkwitz S & Ladher RK Progressive restriction of otic fate: the role of FGF and Wnt in resolving inner ear potential. Development (Cambridge, England) 135, 3415– 3424 (2008). 18799542
  39. [42]Groves AK & Bronner-Fraser M Competence, specification and commitment in otic placode induction. Development (Cambridge, England) 127, 3489– 3499 (2000). 10903174
  40. [43]Groves AK & Fekete DM Shaping sound in space: the regulation of inner ear patterning. Development (Cambridge, England) 139, 245– 257 (2011). PMC3243092 22186725
  41. [44]Neves J, Parada C, Chamizo M & Giraldez F Jagged 1 regulates the restriction of Sox2 expression in the developing chicken inner ear: a mechanism for sensory organ specification. Development (Cambridge, England) 138, 735– 744 (2011). 21266409
  42. [45]Appler JM & Goodrich LV Connecting the ear to the brain: Molecular mechanisms of auditory circuit assembly. Progress in neurobiology 93, 488– 508 (2011). 21232575 PMC3078955
  43. [46]Laine H, Sulg M, Kirjavainen A & Pirvola U Cell cycle regulation in the inner ear sensory epithelia: role of cyclin D1 and cyclin-dependent kinase inhibitors. Developmental biology 337, 134– 146 (2010). 19854167
  44. [47]Oesterle EC, Campbell S, Taylor RR, Forge A & Hume CR Sox2 and Jagged1 Expression in Normal and Drug-Damaged Adult Mouse Inner Ear. Journal of the Association for Research in Otolaryngology: JARO 9, 65– 89 (2007). 18157569 PMC2536811
  45. [48]Xiang M, Gao WQ, Hasson T & Shin JJ Requirement for Brn-3c in maturation and survival, but not in fate determination of inner ear hair cells. Development (Cambridge, England) 125, 3935– 3946 (1998). 9735355
  46. [49]Watanabe K Directed differentiation of telencephalic precursors from embryonic stem cells. Nature Neuroscience 8, 288– 296 (2005). 15696161
  47. [50]Muñoz-Sanjuán I & Brivanlou AH Neural induction, the default model and embryonic stem cells. Nature Reviews Neuroscience 3, 271– 280 (2002). 11967557
  48. [51]James D, Levine AJ, Besser D & Hemmati-Brivanlou A TGFbeta/activin/nodal signaling is necessary for the maintenance of pluripotency in human embryonic stem cells. Development (Cambridge, England) 132, 1273– 1282 (2005). 15703277
  49. [52]Camus A, Perea-Gomez A, Moreau A & Collignon J Absence of Nodal signaling promotes precocious neural differentiation in the mouse embryo. Developmental biology 295, 743– 755 (2006). 16678814
  50. [54]Muguruma K Ontogeny-recapitulating generation and tissue integration of ES cell-derived Purkinje cells. Nature Neuroscience 13, 1171– 1180 (2010). 20835252
  51. [55]Bouchard M, de Caprona D, Busslinger M, Xu P & Fritzsch B Pax2 and Pax8 cooperate in mouse inner ear morphogenesis and innervation. BMC developmental biology 10, 89 (2010). 20727173 PMC2939565
  52. [56]Christophorou NAD, Mende M, Lleras-Forero L, Grocott T & Streit A Pax2 coordinates epithelial morphogenesis and cell fate in the inner ear. Developmental biology 345, 180– 190 (2010). 20643116 PMC2946559
  53. [57]Warchol ME & Richardson GP Expression of the Pax2 transcription factor is associated with vestibular phenotype in the avian inner ear. Developmental neurobiology 69, 191– 202 (2009). 19130600 PMC2731773
  54. [58]Lysakowski A Molecular microdomains in a sensory terminal, the vestibular calyx ending. Journal of Neuroscience 31, 10101– 10114 (2011). 21734302 PMC3276652
  55. [59]Li A, Xue J & Peterson EH Architecture of the mouse utricle: macular organization and hair bundle heights. Journal of neurophysiology 99, 718– 733 (2008). 18046005
  56. [60]Li H, Roblin G, Liu H & Heller S Generation of hair cells by stepwise differentiation of embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America 100, 13495– 13500 (2003). 14593207 PMC263842
  57. [61]Oshima K Mechanosensitive Hair Cell-like Cells from Embryonic and Induced Pluripotent Stem Cells. Cell 141, 704– 716 (2010). 20478259 PMC2873974
  58. [62]Ouji Y, Ishizaka S, Nakamura-Uchiyama F & Yoshikawa M In vitro differentiation of mouse embryonic stem cells into inner ear hair cell-like cells using stromal cell conditioned medium. Cell Death and Disease 3, e314 (2012). 22622133 PMC3366087
  59. [63]Chen W Restoration of auditory evoked responses by human ES-cell-derived otic progenitors. Nature 490, 278– 282 (2012). 22972191 PMC3480718
  60. [64]Ouji Y, Ishizaka S, Nakamura-Uchiyama F, Wanaka A & Yoshikawa M Induction of inner ear hair cell-like cells from Math1-transfected mouse ES cells. Cell Death and Disease 4, e700 (2013). 23828563 PMC3730404
  61. [65]Brigande JV & Heller S Quo vadis, hair cell regeneration? Nature Neuroscience 12, 679– 685 (2009). 19471265 PMC2875075
  62. [66]Ding Q A TALEN genome-editing system for generating human stem cell-based disease models. Cell Stem Cell 12, 238– 251 (2013). 23246482 PMC3570604
  63. [67]Ding Q Enhanced Efficiency of Human Pluripotent Stem Cell Genome Editing through Replacing TALENs with CRISPRs. Cell Stem Cell 12, 393– 394 (2013). 23561441 PMC3925309
  64. [68]Trowe M-O Loss of Sox9 in the periotic mesenchyme affects mesenchymal expansion and differentiation, and epithelial morphogenesis during cochlea development in the mouse. Developmental biology 342, 51– 62 (2010). 20346939
  65. [70]Gaboyard S Three-dimensional culture of newborn rat utricle using an extracellular matrix promotes formation of a cyst. Neuroscience 133, 253– 265 (2005). 15893648
  66. [72]Yokomizo T Whole-mount three-dimensional imaging of internally localized immunostained cells within mouse embryos. Nature Protocols 7, 421– 431 (2012). 22322215 PMC3629302

Cited by

Sorted by citations

Authors
Koehler, K. R., & Hashino, E.
Affiliations
Indiana University Indianapolis (US)
Corresponding author
  • Koehler, Karl R
  • Hashino, Eri
Venue
Nature Protocols
Published
2014-05-01
Volume
9
Issue
6
Pages
1229-1244
ISSN
  • 1750-2799 (ISSN-L)
  • 1754-2189
OpenAlex
W2006591300
Cited by
157
References
5
Citations by year
2026: 12 · 2025: 18 · 2024: 12 · 2023: 13 · 2022: 11 · 2021: 15 · 2020: 16 · 2019: 9 · 2018: 10 · 2017: 13 · 2016: 11 · 2015: 14 · 2014: 1 · 2013: 2
FWCI
8.02
Type
journal article
Language
en
Open access
Locations
  • Nature Protocols (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
  • IUScholarWorks (Indiana University) (submittedVersion)
  • PMC
Funders
  • National Institute on Deafness and Other Communication Disorders (R21DC012617, RC1DC010706, R01DC013294)
  • National Center for Research Resources (TL1RR025759)
Topics
  • Life Sciences › Neuroscience › Sensory Systems › Hearing, Cochlea, Tinnitus, Genetics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
Keywords
inner ear organoids, mouse embryonic stem cells, 3D organoid culture, hair cells, supporting cells, otic vesicle, inner ear regeneration, chemically defined culture, extracellular matrix, sensory epithelium
MeSH terms
Animals, Cell Differentiation, Hair Cells, Auditory, Ear, Inner, Organoids, Extracellular Matrix Proteins, Cell Culture Techniques, Mice, Embryonic Stem Cells

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review