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Kelley, Lawrence A, Mezulis, Stefans, Yates, Christopher M, Wass, Mark N, Sternberg, Michael J E·2015·Nature Protocols
DOI 10.1038/nprot.2015.053

Cited by (1,025)

Items 101–200 of 1,025

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  3. 2019-nCoV (Wuhan virus), a novel Coronavirus: human-to-human transmission, travel-related cases, and vaccine readiness
    Robyn Ralph, Jocelyne M. Lew, Tiansheng Zeng, Magen Ellen Francis, Bei Xue, Melissa Roux, Ali Toloue Ostadgavahi, Salvatore Rubino, Nicholas J. Dawe, Mohammed N. Al‐Ahdal et al. · 2020 · The Journal of Infection in Developing Countries
  4. SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs
    Ryu‐Suke Nozawa, Lora Boteva, Dinesh C. Soares, Catherine Naughton, Alison R. Dun, Adam Buckle, Bernard H. Ramsahoye, Peter Christopher Bruton, Rebecca S. Saleeb, María Arnedo et al. · 2017 · Cell
  5. Contriving Multi-Epitope Subunit of Vaccine for COVID-19: Immunoinformatics Approaches
    Rong Dong, Zhugang Chu, Fuxun Yu, Yan Zha · 2020 · Frontiers in Immunology
  6. Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity
    Zexin Li, Donald Pan, Guangshan Wei, Wei-Ling Pi, Chuwen Zhang, Jianghai Wang, Yongyi Peng, Lu Zhang, Yong Wang, Casey R. J. Hubert et al. · 2021 · The ISME Journal
  7. Band 3, the human red cell chloride/bicarbonate anion exchanger (AE1, SLC4A1), in a structural context
    Reinhart A.F. Reithmeier, Joseph R. Casey, Antreas C. Kalli, Mark S.P. Sansom, Yilmaz Alguel, So Iwata · 2016 · Biochimica et Biophysica Acta (BBA) - Biomembranes
  8. Mutations in KEOPS-complex genes cause nephrotic syndrome with primary microcephaly
    Daniela Anne Braun, Jia Rao, Géraldine Mollet, David Schapiro, Marie‐Claire Daugeron, Weizhen Tan, Olivier Gribouval, Olivia Boyer, Patrick Revy, Tilman Jobst‐Schwan et al. · 2017 · Nature Genetics
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    Noriyuki Nishimura, Wataru Tsuchiya, James J. Moresco, Yuki Hayashi, Kouji Satoh, Nahomi Kaiwa, Tomoko Irisa, Toshinori Kinoshita, Julian I. Schroeder, John R. Yates et al. · 2018 · Nature Communications
  10. The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire
    Marcus J. Edwards, Gaye F. White, Julea N. Butt, David J. Richardson, Thomas Andrew Clarke · 2020 · Cell
  11. Engineering virus-like particles as vaccine platforms
    Kathryn M. Frietze, David S. Peabody, Bryce Chackerian · 2016 · Current Opinion in Virology
  12. Feedback modulation of cholesterol metabolism by the lipid-responsive non-coding RNA LeXis
    Tamer Sallam, Marius C. Jones, Thomas Gilliland, Li Zhang, Xiaohui Wu, Ascia Eskin, Jaspreet Sandhu, David Casero, Thomas Q. de Aguiar Vallim, Cynthia Hong et al. · 2016 · Nature
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    John K. Brunson, Shaun M. K. McKinnie, Jonathan R. Chekan, John P. McCrow, Zachary D. Miles, Erin M. Bertrand, Vincent A. Bielinski, Hanna Luhavaya, Miroslav Obornı́k, G. Jason Smith et al. · 2018 · Science
  14. Structural insights into tetraspanin CD9 function
    Rie Umeda, Yuhkoh Satouh, Mizuki Takemoto, Yoshiko Nakada-Nakura, Kehong Liu, Takeshi Yokoyama, Mikako Shirouzu, So Iwata, Norimichi Nomura, Ken Sato et al. · 2020 · Nature Communications
  15. Human symbionts inject and neutralize antibacterial toxins to persist in the gut
    Aaron G. Wexler, Yiqiao Bao, John C. C. Whitney, Louis‐Marie Bobay, João B. Xavier, Whitman B. Schofield, Natasha A. Barry, Alistair B. Russell, Bao Quoc Tran, Young Ah Goo et al. · 2016 · Proceedings of the National Academy of Sciences
  16. Peroxiredoxins and Redox Signaling in Plants
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  17. Discovery of a pathway for terminal-alkyne amino acid biosynthesis
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  18. The human coronavirus HCoV-229E S-protein structure and receptor binding
    Zhijie Li, Aidan C.A. Tomlinson, Alan H. M. Wong, Dongxia Zhou, Marc Desforges, Pierre J. Talbot, Samir Benlekbir, John L. Rubinstein, James M. Rini · 2019 · eLife
  19. Receptor-mediated chitin perception in legume roots is functionally separable from Nod factor perception
    Zoltán Bozsóki, Jeryl Cheng, Feng Feng, Kira Gysel, Maria Vinther, Kasper R. Andersen, Giles E. D. Oldroyd, Mickaël Blaise, Simona Radutoiu, Jens Stougaard · 2017 · Proceedings of the National Academy of Sciences
  20. The structure of the yeast mitochondrial ribosome
    Nirupa Desai, Alan Brown, Alexey Amunts, Venki Ramakrishnan · 2017 · Science
  21. Red squirrels in the British Isles are infected with leprosy bacilli
    Charlotte Avanzi, Jorge Del‐Pozo, Andrej Benjak, Karen Stevenson, Victor R Simpson, Philippe Busso, Joyce McLuckie, Chloé Loiseau, Colin Lawton, Janne M Schoening et al. · 2016 · Science
  22. Anti-Markovnikov alkene oxidation by metal-oxo–mediated enzyme catalysis
    Stephan Christian Hammer, Grzegorz Kubik, Ella J. Watkins‐Dulaney, Shan Huang, Hannah Minges, Frances H. Arnold · 2017 · Science
  23. Trace gas oxidizers are widespread and active members of soil microbial communities
    Sean K. Bay, Xiyang Dong, James Andrew Bradley, Pok Man Leung, Rhys Grinter, Thanavit Jirapanjawat, Stefan K. Arndt, Perran L. M. Cook, Douglas Edward LaRowe, Philipp A. Nauer et al. · 2021 · Nature Microbiology
  24. Homology-Based Identification of a Mutation in the Coronavirus RNA-Dependent RNA Polymerase That Confers Resistance to Multiple Mutagens
    Nicole R. Sexton, Everett Clinton Smith, Hervé Blanc, Marco Vignuzzi, Olve B. Peersen, Mark R. Denison · 2016 · Journal of Virology
  25. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
    Kathryn M. Kauffman, Fatima A. Hussain, Joy Yang, Philip Arevalo, Julia M. Brown, William K. Chang, David VanInsberghe, Joseph Elsherbini, Radhey Shyam Sharma, Michael Cutler et al. · 2018 · Nature
  26. Biochemical and Structural Insights into Enzymatic Depolymerization of Polylactic Acid and Other Polyesters by Microbial Carboxylesterases
    Mahbod Hajighasemi, Boguslaw P. Nocek, Anatoli Tchigvintsev, Greg Brown, Robert Flick, Xiaohui Xu, Hong Cui, Hai Tran, A. Joachimiak, Peter N. Golyshin et al. · 2016 · Biomacromolecules
  27. The connexin 43 C-terminus: A tail of many tales
    Edward Leithe, Marc Mesnil, Trond Aasen · 2017 · Biochimica et Biophysica Acta (BBA) - Biomembranes
  28. Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics
    Mark R. Davies, Liam C. McIntyre, Ankur Mutreja, Jake A. Lacey, John A. Lees, Rebecca J. Towers, Sebastián Duchêne, Pierre Robert Smeesters, Hannah R. C. Frost, David J. Price et al. · 2019 · Nature Genetics
  29. The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay
    Karole N. D’Orazio, Colin Chih‐Chien Wu, Niladri K. Sinha, Raphaël Loll‐Krippleber, Grant W. Brown, Rachel Green · 2019 · eLife
  30. Cryo-EM analysis of the post-fusion structure of the SARS-CoV spike glycoprotein
    Xiaoyi Fan, Duanfang Cao, Lingfei Kong, Xinzheng Zhang · 2020 · Nature Communications
  31. A Thermostable Cas9 with Increased Lifetime in Human Plasma
    Harrington, Lucas B., Paez-Espino, David, Staahl, Brett T., Chen, Janice S., Ma, Enbo, Kyrpides, Nikos C., Doudna, Jennifer A. · 2017 · Nature Communications
  32. GSDMB induces an asthma phenotype characterized by increased airway responsiveness and remodeling without lung inflammation
    Sudipta Das, Marina Miller, Andrew Beppu, James Mueller, Matthew D. McGeough, Christine Vuong, Maya R. Karta, Peter Rosenthal, Fazila Chouiali, Taylor Alan Doherty et al. · 2016 · Proceedings of the National Academy of Sciences
  33. Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids
    Rafael Pinilla‐Redondo, David Mayo-Muñoz, Jakob Russel, Roger A. Garrett, Lennart Randau, Søren Johannes Sørensen, Shiraz Ali Shah · 2019 · Nucleic Acids Research
  34. A basement membrane discovery pipeline uncovers network complexity, regulators, and human disease associations
    Ranjay Jayadev, Mychel Morais, Jamie M. Ellingford, Sandhya Srinivasan, Richard William Naylor, Craig Lawless, Anna S. Li, Jack Ingham, Eric L. Hastie, Qiuyi Chi et al. · 2022 · Science Advances
  35. MmpL3 is the flippase for mycolic acids in mycobacteria
    Xu, Zhujun, Meshcheryakov, Vladimir A., Poce, Giovanna, Chng, Shu-Sin · 2017 · Proceedings of the National Academy of Sciences
  36. TMEM41B Is a Pan-flavivirus Host Factor
    Hans-Heinrich Hoffmann, William M. Schneider, Kathryn Rozen-Gagnon, Linde A. Miles, Felix Schuster, Brandon S. Razooky, Eliana Jacobson, Xianfang Wu, Soon Yi, Charles M. Rudin et al. · 2020 · Cell
  37. Noncanonical open reading frames encode functional proteins essential for cancer cell survival
    John R. Prensner, Oana M. Enache, Victor Luria, Karsten Krug, Karl R. Clauser, Joshua M. Dempster, Amir Karger, Li Wang, Karolina Stumbraite, Vickie M. Wang et al. · 2021 · Nature Biotechnology
  38. Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
    Xiaoxuan Zheng, Martin Thomas Jahn, Mingming Sun, Ville‐Petri Friman, José Luís Balcázar, Jinfeng Wang, Yu Shi, Xin Gong, Feng Hu, Yong-Guan Zhu · 2022 · The ISME Journal
  39. Repeated evolution of cytochrome P450-mediated spiroketal steroid biosynthesis in plants
    Bastien Christ, Chengchao Xu, Menglong Xu, Fu‐Shuang Li, Naoki Wada, Andrew J. Mitchell, Xiulin Han, Meng‐Liang Wen, Makoto Fujita, Jing‐Ke Weng · 2019 · Nature Communications
  40. Identification of Extracellular DNA-Binding Proteins in the Biofilm Matrix
    J.S. Kavanaugh, Caralyn E. Flack, Jessica L. Lister, Erica B. Ricker, Carolyn B. Ibberson, Christian Jenul, Derek E. Moormeier, Elizabeth Delmain, Kenneth W. Bayles, Alexander R. Horswill · 2019 · mBio
  41. Immunoinformatics analysis and in silico designing of a novel multi-epitope peptide vaccine against Staphylococcus aureus
    Nasim Hajighahramani, Navid Nezafat, Mahboobeh Eslami, Manica Negahdaripour, Seyyed Soheil Rahmatabadi, Younes Ghasemi · 2016 · Infection Genetics and Evolution
  42. Regulation of lipid saturation without sensing membrane fluidity
    Stephanie Ballweg, Erdinç Sezgin, Milka Doktorova, Roberto Covino, John Reinhard, Dorith Wunnicke, Inga Hänelt, Ilya Levental, Gerhard Hummer, Robert Ernst · 2020 · Nature Communications
  43. Structures of the stator complex that drives rotation of the bacterial flagellum
    Justin C. Deme, Steven Johnson, Owen N. Vickery, Amy Aron, Holly Monkhouse, Thomas Griffiths, Rory Hennell James, Ben C. Berks, James W. Coulton, Phillip James Stansfeld et al. · 2020 · Nature Microbiology
  44. Binding interaction of glyphosate with glyphosate oxidoreductase and C-P lyase: Molecular docking and molecular dynamics simulation studies.
    P. Bhatt, T. Joshi, Kalpana Bhatt, Wenping Zhang, Yao-Hua Huang, Shao-Hua Chen · 2020 · Journal of Hazardous Materials
  45. Designing a multi-epitope based vaccine to combat Kaposi Sarcoma utilizing immunoinformatics approach
    Varun Chauhan, Tripti Rungta, Kapil Goyal, Mini Pritam Singh · 2019 · Scientific Reports
  46. Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule
    Tsai, Jordan C., Miller-Vedam, Lakshmi E., Anand, Aditya A., Jaishankar, Priyadarshini, Nguyen, Henry C., Renslo, Adam R., Frost, Adam, Walter, Peter · 2018 · Science
  47. Malaria parasite translocon structure and mechanism of effector export
    Chi-Min Ho, Josh R. Beck, Mason Lai, Yanxiang Cui, Daniel E. Goldberg, Pascal F. Egea, Z. Hong Zhou · 2018 · Nature
  48. Discovery of several thousand highly diverse circular DNA viruses
    Michael J. Tisza, Diana V. Pastrana, Nicole L. Welch, Brittany M. Stewart, Alberto Peretti, Gabriel J. Starrett, Yuk-Ying Susana Pang, Siddharth R. Krishnamurthy, Patricia A. Pesavento, David H. McDermott et al. · 2020 · eLife
  49. cGAS-like receptors sense RNA and control 3′2′-cGAMP signalling in Drosophila
    Kailey M. Slavik, Benjamin R. Morehouse, Adelyn E. Ragucci, Wen Zhou, Xianlong Ai, Yuqiang Chen, Lihua Li, Ziming Wei, Heike Bähre, Martin F. König et al. · 2021 · Nature
  50. Compensatory mutations improve general permissiveness to antibiotic resistance plasmids
    Wesley Loftie‐Eaton, Kelsie Bashford, Hannah Quinn, Kieran Dong, Jack Millstein, Samuel S. Hunter, Maureen Kiley Thomason, Houra Merrikh, José Miguel Ponciano, Eva Maria Top · 2017 · Nature Ecology & Evolution
  51. Group II late embryogenesis abundant (LEA) proteins: structural and functional aspects in plant abiotic stress
    Aditya Banerjee, Aryadeep Roychoudhury · 2015 · Plant Growth Regulation
  52. Cryo-EM structure of the entire mammalian F-type ATP synthase
    Gergely Pinke, Long Zhou, Leonid A. Sazanov · 2020 · Nature Structural & Molecular Biology
  53. Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes
    Lukas Kater, Matthias Thoms, Clara Barrio-Garcia, Jingdong Cheng, Sherif Ismail, Yasar Luqman Ahmed, Gert Bange, Dieter Kressler, Otto Berninghausen, Irmgard Sinning et al. · 2017 · Cell
  54. Structure and regulation of the human INO80–nucleosome complex
    Rafael Ayala, Oliver Willhöft, Ricardo J. Aramayo, Martin Wilkinson, Elizabeth A. McCormack, Lorraine Ocloo, Dale B. Wigley, Xiaodong Zhang · 2018 · Nature
  55. Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer
    Jan M. Schuller, James A. Birrell, Hideaki Tanaka, Tsuyoshi Konuma, Hannes Wulfhorst, Nicholas J. Cox, Sandra K. Schuller, Jacqueline Thiemann, Wolfgang Lubitz, Pierre Q. Y. Setif et al. · 2018 · Science
  56. Identification of novel compounds against three targets of SARS CoV-2 coronavirus by combined virtual screening and supervised machine learning
    Onat Kadioglu, Mohamed E.M. Saeed, Henry Johannes Greten, Thomas Efferth · 2021 · Computers in Biology and Medicine
  57. Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry
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  58. Structures of human PRC2 with its cofactors AEBP2 and JARID2
    Vignesh Kasinath, Marco Faini, Simon Poepsel, Dvir Reif, Xinyu Ashlee Feng, Goran Stjepanović, Ruedi H. Aebersold, Eva Nogales · 2018 · Science
  59. Mechanisms and regulation of DNA replication initiation in eukaryotes
    Matthew W. Parker, Michael R. Botchan, James M. Berger · 2017 · Critical Reviews in Biochemistry and Molecular Biology
  60. Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
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  61. Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity
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  62. Rv3723/LucA coordinates fatty acid and cholesterol uptake in Mycobacterium tuberculosis
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  63. A roadmap for metagenomic enzyme discovery
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  64. A Novel Class of ER Membrane Proteins Regulates ER-Associated Endosome Fission
    Melissa Hoyer, Patrick J. Chitwood, Christopher C. Ebmeier, Jonathan F. Striepen, Robert Zhong Qi, William M. Old, Gia K. Voeltz · 2018 · Cell
  65. Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning
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  66. Anti-HER2 scFv-Directed Extracellular Vesicle-Mediated mRNA-Based Gene Delivery Inhibits Growth of HER2-Positive Human Breast Tumor Xenografts by Prodrug Activation
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  68. Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins
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  69. Identification of divergent type VI secretion effectors using a conserved chaperone domain
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  75. Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection
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  78. Vps13D Encodes a Ubiquitin-Binding Protein that Is Required for the Regulation of Mitochondrial Size and Clearance
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  84. Cryo-EM Structure of the Fork Protection Complex Bound to CMG at a Replication Fork
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  96. Human Condensin I and II Drive Extensive ATP-Dependent Compaction of Nucleosome-Bound DNA
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  100. Aptamer Bioinformatics
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