Histone methylation: a dynamic mark in health, disease and inheritance

Greer, Eric L., Shi, Yang·2012·Nature Reviews Genetics
DOI 10.1038/nrg3173

Cites (277)

Items 201–276 of 276

  1. PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression
    Eerappa Rajakumara, Zhentian Wang, Honghui Ma, Lulu Hu, Hao Chen, Yan Lin, Rui Guo, Feizhen Wu, Haitao Li, Fei Lan et al. · 2011 · Molecular Cell
  2. Arginine Methylation of the Histone H3 Tail Impedes Effector Binding
    Aimee N. Iberg, Alexsandra B. Espejo, Donghang Cheng, Daehoon Kim, Jonathan Michaud‐Levesque, Stéphane Richard, Mark T. Bedford · 2007 · Journal of Biological Chemistry
  3. Pharmacogenetic analysis of lithium-induced delayed aging in Caenorhabditis elegans
    McColl, Gawain, Killilea, David W., Hubbard, Alan E., Vantipalli, Maithili C., Melov, Simon, Lithgow, Gordon J. · 2008 · Journal of Biological Chemistry
  4. Patterns of exon-intron architecture variation of genes in eukaryotic genomes
    Liucun Zhu, Ying Zhang, Wen Zhang, Sihai Yang, Jian‐Qun Chen, Dacheng Tian · 2009 · BMC Genomics
  5. Caenorhabditis elegansDNA does not contain 5-methylcytosine at any time during development or aging
    Victoria J. Simpson, Thomas E. Johnson, Richard F. Hammen · 1986 · Nucleic Acids Research
  6. PRMT7, a New Protein Arginine Methyltransferase That Synthesizes Symmetric Dimethylarginine
    Jin‐Hyung Lee, Jeffry R. Cook, Zhi-Hong Yang, Olga V. Mirochnitchenko, Samuel Gunderson, Arthur M. Felix, Nicole Herth, Ralf Hoffmann, Sidney Pestka · 2004 · Journal of Biological Chemistry
  7. A Reconfigured Pattern of MLL Occupancy within Mitotic Chromatin Promotes Rapid Transcriptional Reactivation Following Mitotic Exit
    Gerd A. Blobel, Stephan Kadauke, Eric Wang, Alan W. Lau, Johannes A. Zuber, Margaret M. Chou, Christopher R. Vakoc · 2009 · Molecular Cell
  8. Cross-talk between Histone Modifications in Response to Histone Deacetylase Inhibitors
    Karl P. Nightingale, Susanne Gendreizig, Darren A. White, Charlotte Ann Bradbury, Florian Hollfelder, Bryan M. Turner · 2006 · Journal of Biological Chemistry
  9. Pre-mRNA splicing is a determinant of histone H3K36 methylation
    Soo‐Jin Kim, Hyunmin Kim, Nova Fong, Benjamin Erickson, David L. Bentley · 2011 · Proceedings of the National Academy of Sciences
  10. PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis
    Dmitry Karachentsev, Kavitha Sarma, Danny Reinberg, Ruth Steward · 2005 · Genes & Development
  11. The MES-2/MES-3/MES-6 Complex and Regulation of Histone H3 Methylation in C. elegans
    Laurel B. Bender, Ru Cao, Yi Zhang, Susan Strome · 2004 · Current Biology
  12. The DNA-binding Polycomb group protein Pleiohomeotic mediates silencing of a Drosophila homeotic gene
    Cornelia Fritsch, J. Lesley Brown, Judith A. Kassis, Jürg Müller · 1999 · Development
  13. Specificity and mechanism of the histone methyltransferase Pr-Set7
    Bing Xiao, Chun Jing, Geoff P. Kelly, P.A. Walker, Frederick W. Muskett, Thomas A. Frenkiel, Stephen R. Martin, Kavitha Sarma, Danny Reinberg, Steve J. Gamblin et al. · 2005 · Genes & Development
  14. Inactivation of a histone methyltransferase by mutations in human cancers.
    Keun‐Cheol Kim, Liqing Geng, Shi Huang · 2003 · PubMed
  15. The Global Histone Modification Pattern Correlates with Cancer Recurrence and Overall Survival in Gastric Adenocarcinoma
    Young Soo Park, Min Young Jin, Yong Jin Kim, Jeong Hwan Yook, Byung Sik Kim, Se Jin Jang · 2008 · Annals of Surgical Oncology
  16. Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex
    Sheryl T. Smith, Svetlana Petruk, Yurii Sedkov, Elizabeth Cho, Sergei V. Tillib, Eli Canaani, Alexander Mazo · 2004 · Nature Cell Biology
  17. Polycomb Proteins Remain Bound to Chromatin and DNA during DNA Replication In Vitro
    Nicole Jane Francis, Nicole E. Follmer, Matthew D. Simon, George Aghia, Jeffrey D. Butler · 2009 · Cell
  18. High-resolution X-ray and NMR Structures of the SMN Tudor Domain: Conformational Variation in the Binding Site for Symmetrically Dimethylated Arginine Residues
    Remco Sprangers, Matthew R. Groves, Irmgard Sinning, Michael Sattler · 2003 · Journal of Molecular Biology
  19. Methylation of H3K4 Is Required for Inheritance of Active Transcriptional States
    Tetsuya Muramoto, Iris I. Müller, Giles Thomas, Andrew Melvin, Jonathan Robert Chubb · 2010 · Current Biology
  20. Linking Cell Cycle to Histone Modifications: SBF and H2B Monoubiquitination Machinery and Cell-Cycle Regulation of H3K79 Dimethylation
    Julia Maria Schulze-Hentrich, Jessica Jackson, Shima Nakanishi, Jennifer Margaret Gardner, Thomas Hentrich, Jeff Haug, Mark Johnston, Sue L. Jaspersen, Michael Steffen Kobor, Ali Shilatifard · 2009 · Molecular Cell
  21. Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila
    Yurii Sedkov, Elizabeth Cho, Svetlana Petruk, Lucy Cherbas, Sheryl T. Smith, Richard S. Jones, Peter T. Cherbas, Eli Canaani, James B. Jaynes, Alexander Mazo · 2003 · Nature
  22. PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nε-dimethyl lysine demethylase
    Christoph Loenarz, Wei Ge, Mathew L. Coleman, Nathan R. Rose, C.D.O. Cooper, Robert J. Klose, Peter John Ratcliffe, Christopher John Schofield · 2009 · Human Molecular Genetics
  23. Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila
    Oliver Bell, Christiane Wirbelauer, Marc Hild, Annette N. D. Scharf, Michaela Schwaiger, David M. MacAlpine, Frédéric Zilbermann, Fred van Leeuwen, Stephen P. Bell, Axel Imhof et al. · 2007 · The EMBO Journal
  24. Trithorax-group protein ASH1 methylates histone H3 lysine 36
    Yujiro Tanaka, Zen-ichiro Katagiri, Koji Kawahashi, Dimitris Kioussis, Shigetaka Kitajima · 2007 · Gene
  25. The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9
    Arunkumar Dhayalan, Raluca Tamas, Ina Bock, Anna Tattermusch, Emilia Dimitrova, Srikanth Kudithipudi, Sergey Ragozin, Albert Jeltsch · 2011 · Human Molecular Genetics
  26. RNA traffic control of chromatin complexes
    Magdalena J. Koziol, John L. Rinn · 2010 · Current Opinion in Genetics & Development
  27. TwoC. eleganshistone methyltransferases represslin-3EGF transcription to inhibit vulval development
    Erik C. Andersen, Howard Robert Horvitz · 2007 · Development
  28. Regulation of the osteoblast‐specific transcription factor Osterix by NO66, a Jumonji family histone demethylase
    Krishna Murari Sinha, Hideyo Yasuda, Madelene M Coombes, Sharon Dent, Benoît De Crombrugghe · 2009 · The EMBO Journal
  29. Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3
    Peng Zhang, Jiamu Du, Bingfa Sun, Xianchi Dong, Guoliang Xu, Jin‐Qiu Zhou, Qingqiu Huang, Qun Liu, Quan Hao, Jianping Ding · 2006 · Nucleic Acids Research
  30. Two SET domain containing genes link epigenetic changes and aging in Caenorhabditis elegans
    Zhuoyu Ni, Atsushi Ebata, Elham Alipanahiramandi, Siu Sylvia Lee · 2011 · Aging Cell
  31. Essential Functions of the Histone Demethylase Lid
    Ling Li, Christina Greer, Robert N. Eisenman, Julie Secombe · 2010 · PLoS Genetics
  32. Coordinated but physically separable interaction with H3K27-demethylase and H3K4-methyltransferase activities are required for T-box protein-mediated activation of developmental gene expression
    Sara A. Miller, Albert C. Huang, Michael M. Miazgowicz, Margaret M. Brassil, Amy S. Weinmann · 2008 · Genes & Development
  33. ASH1, a Drosophila trithorax group protein, is required for methylation of lysine 4 residues on histone H3
    Kristin Nastase Byrd, Allen Shearn · 2003 · Proceedings of the National Academy of Sciences
  34. Studies of Histone Methylation during the HeLa S-3 Cell Cycle
    Thaddeus W. Borun, David Pearson, Woon Ki Paik · 1972 · Journal of Biological Chemistry
  35. Preferential Dimethylation of Histone H4 Lysine 20 by Suv4-20
    Hongbo Yang, James J. Pesavento, Taylor W. Starnes, Diane E. Cryderman, Lori L. Wallrath, Neil L. Kelleher, Craig Andrew Mizzen · 2008 · Journal of Biological Chemistry
  36. Reduced exploration, increased anxiety, and altered social behavior: Autistic-like features of euchromatin histone methyltransferase 1 heterozygous knockout mice
    Monique C.M. Balemans, Manon M. H. Huibers, Nathalie Eikelenboom, Arthur J. Kuipers, Rik C.J. van Summeren, Michael M.C.A. Pijpers, Makoto Tachibana, Yoichi Shinkai, Hans van Bokhoven, Catharina E.E.M. Van der Zee · 2009 · Behavioural Brain Research
  37. Crystal Structure of the Human Histone Methyltransferase ASH1L Catalytic Domain and Its Implications for the Regulatory Mechanism
    Sojin An, Kwon Joo Yeo, Young Ho Jeon, Ji‐Joon Song · 2011 · Journal of Biological Chemistry
  38. Identification of NUP98 abnormalities in acute leukemia: JARID1A (12p13) as a new partner gene
    Laura J. C. M. van Zutven, Emine Önen, Sandra C. J. M. Velthuizen, Ellen van Drunen, Anne R. M. von Bergh, Marry M. van den Heuvel‐Eibrink, Angelo Veronese, Cristina Mecucci, Massimo Negrini, Georgine E. de Greef et al. · 2006 · Genes Chromosomes and Cancer
  39. Characterization of the grappa Gene, the Drosophila Histone H3 Lysine 79 Methyltransferase
    Gregory Shanower, Martin Müller, Jason L. Blanton, Viktor Honti, Henrik Gyurkovics, Paul D. Schedl · 2004 · Genetics
  40. Epigenetic regulation of aging stem cells
    Elizabeth A. Pollina, Anne Brunet · 2011 · Oncogene
  41. E-N-dimethyllysine in histones
    Woon Ki Paik, Sangduk Kim · 1967 · Biochemical and Biophysical Research Communications
  42. MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in theC. elegansgerm line
    Laurel B. Bender, Jinkyo Suh, Coleen R. Carroll, Youyi Fong, Ian M. Fingerman, Scott D. Briggs, Ru Cao, Yi Zhang, V Reinke, Susan Strome · 2006 · Development
  43. Regulation of Set9-Mediated H4K20 Methylation by a PWWP Domain Protein
    Yu Wang, Bharat D. Reddy, James X. Thompson, Hengbin Wang, Ken-ichi Noma, John R. Yates, Songtao Jia · 2009 · Molecular Cell
  44. Specificity of the Chromodomain Y Chromosome Family of Chromodomains for Lysine-methylated ARK(S/T) Motifs
    Wolfgang Fischle, Henriette Franz, Steven A. Jacobs, C. David Allis, Sepideh Khorasanizadeh · 2008 · Journal of Biological Chemistry
  45. PHF8 Targets Histone Methylation and RNA Polymerase II To Activate Transcription
    Klaus Fortschegger, Petra de Graaf, Nikolay S. Outchkourov, Frederik M. A. van Schaik, H. T. Marc Timmers, Ramin Shiekhattar · 2010 · Molecular and Cellular Biology
  46. In vitro replication through nucleosomes without histone displacement
    Catherine Bonne-Andréa, Mei Lie Wong, Bruce Alberts · 1990 · Nature
  47. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo
    Eerappa Rajakumara, Julie A. Law, Dhirendra K. Simanshu, Philipp Voigt, Lianna M. Johnson, Danny Reinberg, Dinshaw J. Patel, Steven E. Jacobsen · 2011 · Genes & Development
  48. The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase
    Nara Lee, Junyu Zhang, Robert J. Klose, Hediye Erdjument‐Bromage, Paul Tempst, Richard S Jones, Yi Zhang · 2007 · Nature Structural & Molecular Biology
  49. Polycomb Complexes and the Propagation of the Methylation Mark at the Drosophila Ubx Gene
    Tatyana G. Kahn, Yuri B. Schwartz, Gaetano Ivan Dellino, Vincenzo Pirrotta · 2006 · Journal of Biological Chemistry
  50. Chemical Studies of Histone Methylation
    Edward L. Gershey, G. W. HASLETT, G. Vidali, V. G. Allfrey · 1969 · Journal of Biological Chemistry
  51. The CW domain, a new histone recognition module in chromatin proteins
    Verena Hoppmann, Tage Thorstensen, Per Eugen Kristiansen, Silje Veie Veiseth, Mohummad Aminur Rahman, Kenneth Finne, Reidunn B. Aalen, Rein Aasland · 2011 · The EMBO Journal
  52. The X-linked mental retardation gene PHF8 is a histone demethylase involved in neuronal differentiation
    Jihui Julia Qiu, Guang W. Shi, Yuanhui Jia, Jing Li, Meng Wu, Jiwen Li, Shuo Dong, Jiemin Wong · 2010 · Cell Research
  53. Trithorax- and Polycomb-Group Response Elements within an Ultrabithorax Transcription Maintenance Unit Consist of Closely Situated but Separable Sequences
    Sergei V. Tillib, Svetlana Petruk, Yurii Sedkov, A. Kuzin, Miki Fujioka, Tadaatsu Goto, Alexander Mazo · 1999 · Molecular and Cellular Biology
  54. Heterochromatin Protein 1a Stimulates Histone H3 Lysine 36 Demethylation by the Drosophila KDM4A Demethylase
    Chia‐Hui Lin, Bing Li, Selene K. Swanson, Ying Zhang, Laurence A. Florens, Michael P. Washburn, Susan M. Abmayr, Jerry L. Workman · 2008 · Molecular Cell
  55. The significance, development and progress of high-throughput combinatorial histone code analysis
    Nicolas L. Young, Peter A. DiMaggio, Benjamin Aaron Garcia · 2010 · Cellular and Molecular Life Sciences
  56. DNA methylation and the formation of heterochromatin in Neurospora crassa
    Michael R. Rountree, Eric U. Selker · 2010 · Heredity
  57. dSet1 Is the Main H3K4 Di- and Tri-Methyltransferase ThroughoutDrosophilaDevelopment
    Graham Hallson, Robert E Hollebakken, Taosui Li, Monika Syrzycka, Inho Kim, Shawn Cotsworth, Kathleen A Fitzpatrick, Donald A. R. Sinclair, Barry M. Honda · 2011 · Genetics
  58. PHF8 is a histone H3K9me2 demethylase regulating rRNA synthesis
    Ziqi Zhu, Yanru Wang, Xia Li, Yiqin Wang, Longyong Xu, Xiang Wang, Tianliang Sun, Xiaobin Dong, Lulu Chen, Hailei Mao et al. · 2010 · Cell Research
  59. Mutations in the BRWD3 Gene Cause X-Linked Mental Retardation Associated with Macrocephaly
    Michael J. Field, Patrick S. Tarpey, Raffaella Smith, Sarah Edkins, Sarah O’Meara, Claire Stevens, Calli Tofts, Jon W. Teague, Adam P. Butler, Ed Dicks et al. · 2007 · The American Journal of Human Genetics
  60. Asymmetric Arginine Dimethylation Determines Life Span in C. elegans by Regulating Forkhead Transcription Factor DAF-16
    Yuta Takahashi, Hiroaki Daitoku, Keiko Hirota, Hiroko Tamiya, Atsuko Yokoyama, Koichiro Kako, Yusuke Nagashima, Ayumi Nakamura, Takashi Shimada, Satoshi Watanabe et al. · 2011 · Cell Metabolism
  61. Calmodulin methyltransferase is an evolutionarily conserved enzyme that trimethylates Lys-115 in calmodulin
    Roberta Magnani, Lynnette M. A. Dirk, Raymond C. Trievel, Robert L. Houtz · 2010 · Nature Communications
  62. Structural insights into a novel histone demethylase PHF8
    Lin Yu, Yang Wang, Shuo Huang, Jianjun Wang, Zengqin Deng, Qi Zhang, Wei Wu, Xingliang Zhang, Zhao Liu, Weimin Gong et al. · 2010 · Cell Research
  63. SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair
    Amanda C. Nottke, Sara E. Beese‐Sims, Luiz F. Pantalena, V Reinke, Yang Shi, Mónica P. Colaiácovo · 2011 · Proceedings of the National Academy of Sciences
  64. Splitting of H3–H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange
    Yael Katan‐Khaykovich, Kevin Struhl · 2011 · Proceedings of the National Academy of Sciences
  65. Characterization of Drosophila melanogaster JmjC+N histone demethylases
    Marta Lloret-Llinares, Clément Carré, Alejandro Vaquero, Natalia de Olano, Fernando Azorı́n · 2008 · Nucleic Acids Research
  66. ?-N-Trimethyllysin, eine neue Aminos�ure in Histonen
    K. Hempel, Heinrich Lange, Leonhard Birkofer · 1968 · Die Naturwissenschaften
  67. Frequency of NUP98-NSD1 fusion transcript in childhood acute myeloid leukaemia
    Nuno Cerveira, Cecília Correia, Sofia Dória, Susana Bizarro, Patrícia Rocha, P Gomes, Luís Miguel Magalhães Torres, Lucília Norton, B S Borges, Sérgio M.M.J. Castedo et al. · 2003 · Leukemia
  68. Global reduction of the epigenetic H3K79 methylation mark and increased chromosomal instability in CALM-AF10–positive leukemias
    Lin, Yi-Hui, Kakadia, Purvi M., Chen, Ying, Li, Ya-Qiang, Deshpande, Aniruddha J., Buske, Christian, Zhang, Kang-Ling, Zhang, Yi, Xu, Guo-Liang, Bohlander, Stefan K. · 2009 · Blood
  69. Methylation and demethylation activities of a C. elegans MLL-like complex attenuate RAS signalling
    Kate Fisher, Stacey M. Southall, Jon R. Wilson, Gino B Poulin · 2010 · Developmental Biology
  70. Do chromatin loops provide epigenetic gene expression states?
    Wulan Deng, Gerd A. Blobel · 2010 · Current Opinion in Genetics & Development
  71. Functional significance of mutations in the Snf2 domain of ATRX
    Matthew Mitson, Lawrence A. Kelley, Michael J.E. Sternberg, Douglas R. Higgs, Richard J. Gibbons · 2011 · Human Molecular Genetics
  72. Drosophila dSet2 functions in H3-K36 methylation and is required for development
    Marianne Stabell, Jan Larsson, Reidunn B. Aalen, Andrew Lambertsson · 2007 · Biochemical and Biophysical Research Communications
  73. KIAA1718 is a histone demethylase that erases repressive histone methyl marks
    Atsushi Yokoyama, Yosuke Okuno, Toshihiro Chikanishi, Waka Hashiba, Hiroki Sekine, Ryoji Fujiki, Shigeaki Kato · 2010 · Genes to Cells
  74. Histone tails: Directing the chromatin response to DNA damage
    Roger A. Greenberg · 2011 · FEBS Letters
  75. Concomitant microduplications of MECP2 and ATRX in male patients with severe mental retardation
    Shozo Honda, Shigeko Satomura, Shin Hayashi, Issei Imoto, Eiji Nakagawa, Yu‐ichi Goto, Johji Inazawa · 2011 · Journal of Human Genetics
  76. Histone and DNA Modifications in Mental Retardation
    Shigeki Iwase, Yang Shi · 2010 · Springer eBooks