Understanding nucleosome dynamics and their links to gene expression and DNA replication
Cited by (482)
Items 401–482 of 482
- Isolation of Nucleoid Fraction from Mycoplasma gallisepticum Cells with Synchronized Cell DivisionAleksandr I. Zubov, Valentina G. Ladygina, M. A. Galyamina, Olga V. Pobeguts, Gleb Yu. Fisunov · 2021 · Bulletin of Experimental Biology and Medicine
- Global and Gene-specific Transcriptional Responses to Acute StressHarry Fischl, Tom Brown, Andrew Angel, Jane Mellor · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Data on nucleoid-associated proteins isolated from Mycoplasma gallisepticum after intracellular infectionAleksandr I. Zubov, Valentina G. Ladygina, Sergey I. Kovalchuk, Rustam Ziganshin, M. A. Galyamina, Olga V. Pobeguts, Gleb Yu. Fisunov · 2021 · Data in Brief
- A New Mechanism for Genomic Nucleosome Positioning by Native ISWI and Engineered CHD Chromatin Remodeling Proteins is Driven by Sequence-Specific DNA Binding.Drake A. Donovan · 2021 · Scholars' Bank (University of Oregon)
- Influence of Linker DNA on Nucleosome Structure according to Single-Particle Fluorescence Microscopy DataTatyana V. Andreeva, Alexander V. Lyubitelev, Natalia V. Maluchenko, Vasily M. Studitsky, Mikhail P. Kirpichnikov, Alexey V. Feofanov · 2021 · Moscow University Biological Sciences Bulletin
- A histone modification-based synthetic circuit to engineer temporal gene expression in Arabidopsis floral meristemsMargaret Anne Pelayo, Haruka Sawada, Kasumi Matsushita, Zemiao He, Liang‐Sheng Looi, Naoya Katagiri, Nobutoshi Yamaguchi, Toshiro Ito · 2022 · Research Square
- Rtt109 promotes nucleosome replacement ahead of the replicating forkFelix Jonas, Gilad Yaakov, Naama Barkai · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Chromatin reorganization, signaling responses and non-coding RNA regulators in homeostasis and senescenceNataša Josipović · 2022 · eDiss (Georg-August-Universität Göttingen)
- Faculty Opinions recommendation of RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast.Tom Owen‐Hughes · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of The nucleosome core particle remembers its position through DNA replication and RNA transcription.Simon J. Elsässer · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Gene expression levels tune germline mutation rates through the compound effects of transcription-coupled repair and damageBo Xia, Itai Yanai · 2021 · Research Square
- Ultimate Precision: Targeting Cancer But Not Normal Self-ReplicationVamsidhar Velcheti, David S. Schrump, Yogen Saunthararajah · 2021 · Current cancer research
- Faculty Opinions recommendation of The nucleosome core particle remembers its position through DNA replication and RNA transcription.Yamini Dalal · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Analysis of Yeast RNAP I Transcription of Nucleosomal Templates In VitroPhilipp Merkl, Christopher Schächner, Michael Pilsl, Katrin Schwank, Kristin Hergert, Gernot Längst, Philipp Milkereit, Joachim Griesenbeck, Herbert Tschochner · 2022 · Methods in molecular biology
- Targeting the super elongation complex for oncogenic transcription driven tumor malignancies: Progress in structure, mechanisms and small molecular inhibitor discoveryXinyu Wu, Yanqiu Xie, Kehao Zhao, Jing Lü · 2023 · Advances in cancer research
- Data from Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer PhenotypesNavonil De Sarkar, Robert D. Patton, Anna-Lisa Doebley, Brian P. Hanratty, Mohamed Adil, Adam J. Kreitzman, Jay F. Sarthy, Minjeong Ko, Sandipan Brahma, Michael P. Meers et al. · 2023
- Nucleosome Positioning Events and Probability Model Created with Probability Theory Application in a Human DNA SequenceBrahim Cherif, Salah Cherif · 2023 · Research Square
- Advances in Epigenetic Mechanisms and Transgenerational Inheritance of Male Infertility Induced by Exposure to Endocrine-Disrupting ChemicalsYan Yuan, Peihao Wu, Yixuan Yan, Jing Wang, Jialin Feng, Jinqi Ma, Qiuqin Tang, Wei Wu · 2023 · IntechOpen eBooks
- Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Harald Berger, Katharina Steinert, Slavica Janevska, Nadia Ponts, Hans‐Ulrich Humpf, Svetlana A. Kalinina, Lena Studt · 2024 · Epigenetics & Chromatin
- Will Liquid Biopsy Deliver the Expected Breakthrough in Clinical Oncology? Contribution of Mass Spectrometry-Based ProteomicsPietro Traldi, Marco Agostini, Mahmoud H. Hamdan · 2024 · Preprints.org
- Structural and biochemical studies on chromatin-protein complexes in transcription initiationJulio Abril Garrido · 2024
- Nucleosome PositioningVladimir B. Teif, Christopher T. Clarkson · 2019 · Elsevier eBooks
- Rsc1 DNA-binding bromodomain drives RSC activity at A-rich promotersCamille Sayou, Oriane Viravaux, Jordan Lyonnet, Jérémy Lucas, Raphael Dupeyron, Emmanuel Thévenon, Julie Marais, Annie Adrait, Yohann Couté, François Parcy et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- WITHDRAWN: SAUNA - Simulated Annealing for Unique Nucleosome Arrangements from Cell-Free DNA-Sequencing DataMaria Rafaela Lambrinos, Tara Rahimi, Tarun Mehra, Michael Schmid, Nicola Miglino, Anna Romanens, Kirsten D. Mertz, Michael O. Krauthammer, Ronny Nienhold, Andreas N. WICKI et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and DiseaseAchal Mahajan, Francesca Ratti, Ban Wang, Hana El‐Samad, James H. Kaufman, Vishrawas Gopalakrishnan · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- ILF2 blockade suppresses helicase-mediated R-loop resolution to induce lethality in homologous recombination-deficient cancersYi Chieh Lim, Soak Kuan Lai, Ru Yang, Yong Kang Chua, Rémi Patouret, Vaishnervi Manoj, C Soh, Benjamin Lebeau, Ning Cham, Wei Meng et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Cytoplasmic Histone Is a Marker of Pro‐Inflammatory CD4 + T CellsBohan Xu, Guanglong Liu, Yifang Peng, Chuxi Chen, Bingsong Li, Tianning Zhu, Nan Jing Huang, Jiawei Zhong, Kang Zhang, Zhizhang Wang · 2025 · Immunology
- Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and DiseaseAchal Mahajan, Francesca Ratti, Ban Wang, Hana El‐Samad, James H. Kaufman, Vishrawas Gopalakrishnan · 2025 · eLife
- Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and DiseaseAchal Mahajan, Francesca Ratti, Ban Wang, Hana El‐Samad, James H. Kaufman, Vishrawas Gopalakrishnan · 2025 · eLife
- Advances in dietary bioactives: Unlocking chromatin accessibilityWenqi Huang, Shiye Lin, Yi Yuan, Mohamed Ali Farag, Hui Wang, Jianbo Xiao · 2025 · Phytochemistry Reviews
- Pervasive binding of the stem cell transcription factor SALL4 shapes the chromatin landscapeKashyap Chhatbar, Sara Giuliani, Timo Quante, Beatrice Alexander-Howden, Jim Selfridge, Jacky Guy, Tatsiana Auchynnikava, Christos Spanos, Tricia Mathieson, Guido Sanguinetti et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Pathophysiology, biological models and new therapeutic approaches in β-Propeller Associated NeurodegenerationAna Romero-González, Diana Reche-López, Mónica Álvarez-Córdoba, Alejandra Suárez-Carrillo, Paula Cilleros-Holgado, Rocío Piñero-Pérez, David Gómez-Fernández, José Manuel Romero-Domínguez, Alejandra López-Cabrera, José A. Sánchez-Alcázar · 2025 · International review of cytology
- Inositide-dependent signal transduction in the nucleus: a virtuous path from the laboratory to the clinicAlessia De Stefano, James Andrew McCubrey, P.G. Suh, Giulia Ramazzotti, Roberta Fiume, Stefano Ratti, Matilde Y. Follo, Lucia Manzoli, Lucio Cocco · 2025 · Advances in Biological Regulation
- Additional file 1 of NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomesChen, Xiaolan, Yang, Hui, Liu, Guifen, Yong Zhang · 2021 · Figshare
- Additional file 5 of Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Harald Berger, Katharina Steinert, Slavica Janevska, Ponts, Nadia, Humpf, Hans-Ulrich, Svetlana A. Kalinina, Lena Studt · 2024 · Figshare
- Additional file 1 of Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCposHiroaki Kato, Mitsuhiro Shimizu, Urano, Takeshi · 2021 · Figshare
- Additional file 1 of Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Berger, Harald, Katharina Steinert, Slavica Janevska, Ponts, Nadia, Humpf, Hans-Ulrich, Svetlana A. Kalinina, Lena Studt · 2024 · Figshare
- Additional file 4 of Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Berger, Harald, Katharina Steinert, Slavica Janevska, Ponts, Nadia, Humpf, Hans-Ulrich, Svetlana A. Kalinina, Lena Studt · 2024 · Figshare
- Additional file 2 of Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Harald Berger, Katharina Steinert, Slavica Janevska, Ponts, Nadia, Humpf, Hans-Ulrich, Svetlana A. Kalinina, Lena Studt · 2024 · Figshare
- Additional file 3 of Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroiAnna Katharina Atanasoff-Kardjalieff, Berger, Harald, Katharina Steinert, Slavica Janevska, Ponts, Nadia, Humpf, Hans-Ulrich, Svetlana A. Kalinina, Lena Studt · 2024 · Figshare
- Structural basis of RNA polymerase II transcription on the histone H3–H4 octasomeCheng-Han Ho, K. Nozawa, Masahiro Nishimura, Mayuko Oi, Tomoya Kujirai, Mitsuo Ogasawara, Haruhiko Ehara, Shun‐ichi Sekine, Yoshimasa Takizawa, Hitoshi Kurumizaka · 2026 · Journal of Biological Chemistry
- A latent interaction landscape inferred from Micro-C encodes chromatin regulatory identity and conformational diversity beyond contact frequencyRahul Mittal, Kavana Priyadarshini Keshava, Arnab Bhattacherjee · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Dnmt1 mediates epigenetic restriction of invasive traits in clonal crayfishJ. Jaime Diaz-Larrosa, Vitor Coutinho Carneiro, Katharina Hanna, Günter Raddatz, Frank Lyko · 2026 · Nature Communications
- Role of histone chaperones in the replication and repair of DNAD. Liu · 2018
- The roles of FANCD2 in the maintenance of common fragile site stabilityPhilippe Fernandes · 2018 · theses.fr (ABES)
- Etude du rôle de la protéine kinase DCLK3 dans les mécanismes de neurodégénérescence dans la maladie de HuntingtonLucie de Longprez · 2018 · theses.fr (ABES)
- Analysis of the composition and the function of oocyte-specific TBP2-containing transcription machinery during mouse oogenesisChangwei Yu · 2018 · theses.fr (ABES)
- Study of the co-translational assembly mechanism of transcription complexes in mammalian cellsPooja Mukherjee · 2019 · theses.fr (ABES)
- Régulation épigénétique de la télomérase dans un modèle de leucémie aiguë promyélocytaireDelphine Garsuault · 2019 · theses.fr (ABES)
- Maintien de l'hétérochromatine en réponse aux dommages à l'ADN dans des cellules de mammifèresAnna Fortuny · 2019 · theses.fr (ABES)
- Organisation du génome par le complexe cohésine chez la levure Saccharomyces cerevisiaeLise Dauban · 2019 · theses.fr (ABES)
- Role of general regulatory factors in the control of gene expression and transcription fidelityDrice Challal · 2019 · theses.fr (ABES)
- Régulation et rôle de la compaction de la chromatine dans des cellules pluripotentes et lors de la différentiationClaire Dupont · 2020 · theses.fr (ABES)
- Development of a new mutation monitoring system in the yeast Saccharomyces cerevisiaeEliet H. Sipos · 2021 · theses.fr (ABES)
- Molecular Characterization of LncRNAs : ANRIL as a Model SystemCharbel Alfeghaly · 2020 · theses.fr (ABES)
- Vers une meilleure compréhension du rôle des gènes LEC par analyse fonctionnelle de variantsCamille Salaün · 2023 · theses.fr (ABES)
- Structural and functional reorganization of the genome in quiescent cellsManuela Baquero Perez · 2023 · theses.fr (ABES)
- Deciphering the roles of Jumonji domain containing proteins in Podospora anserinaMengyuan Li · 2024 · theses.fr (ABES)
- ZmSSRP1-mediated chromatin accessibility modulates maize development via regulation of ZmBRD1 transcriptionJ. Q. Wu, Yu Wang, Guangming zheng, Ruyu Yan, Menglin Pu, Yajie Zhao, Z. L. Zhang, Haiping Ding, Yanyan Wang, Chao Luo et al. · 2026 · PLANT PHYSIOLOGY
- NuRepress: Inferring Transcriptional Repressors from Phased Nucleosome ArchitectureQianming Xiang, Binbin Lai · 2026 · Genes
- Contributions of DNA mechanics and trans-regulation to nucleosome positioning in Schizosaccharomyces pombe and its role in co-transcriptional splicingGuoqing Liu, Jing CANG, Zhihao Du, Xiangjun Cui, Hongyu Zhao, Jia Liu · 2026 · Epigenetics & Chromatin
- Histone’s quality control by prokaryotic ClpP/ClpR regulates the eukaryotic mitotic cell cycle in malaria parasitesSudipta Das · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Chromatin folding and functionDinarte N Moreira-Ferreira, Jerson Lima Silva, Guilherme A. P. de Oliveira · 2026 · Elsevier eBooks
- Sequence-encoded H2A.Z nucleosome dynamics control DNA unwrapping and SUV420H1 recognitionTong Zhang, L Huang, Xuanfeng Li, Baoguo Liu, Juan Li, Chaowei Shi, Shusheng Fu, Zheng Zhou, ShengQi Xiang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Isw2-mediated chromatin remodeling governs antifungal tolerance and heteroresistance in Candida albicansMantilla, Maria Juliana, Tebbji, Faïza, Vincent, Antony T., Villeneuve, Louis, Chatr-aryamontri, Andrew, Sellam, Adnane · 2026 · npj Antimicrobials and Resistance
- A Nanopore-Gated Subattoliter Silicon Nanocavity for Single-Molecule Trapping and Analysis without Applying an External ForceFuning Liu, Qitao Hu, Сабанцев Антон Владимирович, Giovanni Di Muccio, Shuangshuang Zeng, Mauro Chinappi, Sebastian Deindl, Zhen Zhang · 2026 · ACS Nano
- Genome-wide rotational and translational phasing of nucleosomes with human transcription factorsHaining Chen, Jordan Krebs, Olivia W. Lang, Jiayi Hu, Devin C Mellini, Judith W. Hyle, Chunliang Li, William Lai, B. Franklin Pugh · 2026 · Molecular Cell
- The +1 nucleosome functions in RNA Pol II transcription initiation and the transition to elongationYumeng Zhan, Julio Abril-Garrido, Frauke Grabbe, Paulina Seweryn, Ute Neef, Christian Dienemann, Patrick Cramer · 2026 · Molecular Cell
- A quantitative FLIM-FRET framework to measure chromatin compaction with extended dynamic range and functional correlationSimone Civita, Paolo Faraci, Alberto Leggio, Sofia Cristiani, Martina Ruglioni, Beatrice Polini, Benedetta Masciulli, Vittoria Carnicelli, Matteo Mariangeli, Francesco Garzella et al. · 2026 · Research Square
- A Scalable MNase-seq Framework for Reproducible Nucleosome Profiling across Pluripotent Stem Cell and Cardiomyocyte ModelsChris G. Thekkedam, David T. Humphreys, Marina Naval-Sánchez, Amy M. Nicks, Richard P. Harvey, Osvaldo Contreras · 2026 · Computational and Structural Biotechnology Journal
- Structural mechanism of histone H2A.Z exchange by human SRCAP-CFDP1 holoenzymeGiho Park, Carl Wu, Robert K. Louder · 2026 · Science Advances
- Epigenetic regulation in liver fibrosis: Focus on the chromatin accessibility landscapeXue Dong, Ming-Hui Li, Zheng-Lin Qiao, Zhi-Hao Xi, Wen-Jie Sun, Qi-Qi Dong, Hui Tao, Chao Lu, Jingjing Yang · 2026 · European Journal of Pharmacology
- RNA-independent cis-autoregulatory circuits within bidirectional gene pairs control metabolismXiang-Yu Liu, Yingying Yu, Guo-Xiao Wang, Rubén García-Martín, C. Ronald Kahn · 2026 · Science Advances
- Helical Peptidomimetic Inhibitors Targeting the Histone Chaperone ASF1 for Cancer TherapyChao Hao, Xiaosa Wang, Kang Wang, Hou Chenying, Mingshuang Wu, Ying Yang, Jingru Ma, Xuhui Kong, Yan Shi, Peng Wu et al. · 2026 · Journal of Medicinal Chemistry
- Targeting Transcriptional Coactivators p300/CBP: Small-Molecule Inhibitors or Bifunctional Proximity-Inducing Modalities?Zonglong Chen, Xun Huang, Yingxia Li · 2026 · Journal of Medicinal Chemistry
- Chromatin stability safeguards mitochondrial homeostasis and restrains TORC1 signalingVinoth Sigamani, Mohd Yousuf, Daniel L. Johnson, Brian D. Strahl, R. Nicholas Laribee · 2026 · PLoS Genetics
- Pan-cancer nucleosome landscapes reveal tumor heterogeneity and inform cell-free DNA-based detectionShen Yang, Jialuo Ye, Jinqi Yuan, Xiaoqian Huang, Yue Yin, zhaoying Liu, Wei Li, Yumei Li · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- NMR-measured Per-residue Electrostatic Potentials Reveal the Importance of Arginine-Lysine Balance on the Conformational Ensemble of Disordered Histone H3 Tails in Nucleosome Core ParticlesAidan Estelle, Vincent Schnapka, Nicolas Bolik-Coulon, Massimiliano Bonomi, Lewis E. Kay · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- BindingDB Entry 50017391: Design, Synthesis, and Evaluation of WD-Repeat-Containing Protein 5 (WDR5) Degraders.BindingDB · 2023 · UC San Diego
- Histone modifications define distinct nucleosome positions in cell-free DNAYukun Ou, Gunsagar Singh Gulati, Caroline F. Tyndall, Medha Pandey, Ji-Heui Seo, Ze Zhang, Zhenjie Jin, Garyoung Gary Lee, Rashad Nawfal, Taylor A. Hoggood et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- A TORC1-regulated H3K4me reader preserves promoter chromatin stability, and its degradation promotes meiotic remodelingLi Yun, Peng-Chang Zhang, Kun Zhou, Wei-Tao Wang, Kai-Yuan Zhang, Yanlin Wu, Ming Zhu, Hai-Qi Ge, Tian Min, Fang Suo et al. · 2026 · Molecular Cell
- P-TEFb regulates nucleosome positioning at promoters澄豪 郭, Shuhan Si, Yongpeng Jiang, Xiong Ji, Chengqi Lin, Zhuojuan Luo · 2026 · Molecular Cell