The landscape and therapeutic relevance of cancer-associated transcript fusions
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Items 201–300 of 450
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- Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous CellsYinwei Cheng, Yunmei Chen, Qianqian Zhao, Xing Zhao, Ya-Ru Wu, Danze Chen, Lian‐Di Liao, Yang Chen, Qian Yang, Li‐Yan Xu et al. · 2019 · Frontiers in Genetics
- Potential pathogenetic link between angiomyofibroblastoma and superficial myofibroblastoma in the female lower genital tract based on a novel MTG1-CYP2E1 fusionRyosuke Tajiri, Eisuke Shiba, Ryuji Iwamura, Chisachi Kubo, Aya Nawata, Hiroshi Harada, Kiyoshi Yoshino, Masanori Hisaoka · 2021 · Modern Pathology
- Genomic and clinical findings in myeloid neoplasms with PDGFRB rearrangementDanika Di Giacomo, Martina Quintini, Valentina Pierini, Fabrizia Pellanera, Roberta La Starza, Paolo Gorello, Caterina Matteucci, Barbara Crescenzi, Paolo Fabio Fiumara, Marinella Veltroni et al. · 2021 · Annals of Hematology
- Novel COL4A1‐VEGFD gene fusion in myofibromaGuillaume Dachy, Sylvie Fraitag, Boutaina Boulouadnine, Sabine Cordi, Jean‐Baptiste Demoulin · 2021 · Journal of Cellular and Molecular Medicine
- Melanocytic Myxoid Spindle Cell Tumor With ALK Rearrangement (MMySTAR)Émilie Perron, Daniel Pissaloux, Céline Charon‐Barra, Marie Karanian, Laurence Lamant, Sophie Parfait, Laurent Alberti, Arnaud de la Fouchardière · 2017 · The American Journal of Surgical Pathology
- High expression of the vacuole membrane protein 1 (VMP1) is a potential marker of poor prognosis in HER2 positive breast cancerArsalan Amirfallah, Aðalgeir Arason, Hjörleifur Einarsson, Eydis Th. Gudmundsdottir, Edda Sigríður Freysteinsdóttir, Kristrún Ólafsdóttir, Óskar Þór Jóhannsson, Bjarni Agnar Agnarsson, Rosa Bjork Barkardottir, Inga Reynisdóttir · 2019 · PLoS ONE
- Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancerHelena Persson, Rolf Søkilde, Jari Häkkinen, Johan Vallon‐Christersson, Felix Mitelman, Åke Borg, Mattias Höglund, Carlos Rovira · 2020 · International Journal of Cancer
- Emerging Role of Genomic Rearrangements in Breast Cancer: Applying Knowledge from Other CancersBhavna Paratala, Sonia C. Dolfi, Hossein Khiabanian, Lorna Rodríguez-Rodríguez, Shridar Ganesan, Kim Marie Hirshfield · 2016 · Biomarkers in Cancer
- Elucidation of Novel Therapeutic Targets for Breast Cancer with ESR1-CCDC170 FusionJae Heon Jeong, Jae Won Yun, Ha-Young Kim, Chan Yeong Heo, Sejoon Lee · 2021 · Journal of Clinical Medicine
- MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidatesMichael J. Apostolides, Yue Jiang, Mia Husić, Robert Siddaway, Cynthia E Hawkins, Andrei L. Turinsky, Michael Brudno, Arun K Ramani · 2021 · Bioinformatics
- Novel K6-K14 keratin fusion enhances cancer stemness and aggressiveness in oral squamous cell carcinomaFuu‐Jen Tsai, Ming‐Tsung Lai, Jack Cheng, Stev Chun-Chin Chao, Praveen Kumar Korla, Hui‐Jye Chen, Chung-Ming Lin, Ming‐Hsui Tsai, Chun‐Hung Hua, Chia‐Ing Jan et al. · 2019 · Oncogene
- ProTECT—Prediction of T-Cell Epitopes for Cancer TherapyArjun Arkal Rao, Ada A. Madejska, Jacob Pfeil, Benedict Paten, Sofie R. Salama, David H. Haussler · 2020 · Frontiers in Immunology
- Factors Impacting Clinically Relevant RNA Fusion Assays Using Next-Generation SequencingNisha Subhashchandra Ramani, Keyur Pravinchandra Patel, Mark J. Routbort, Hector Alvarez, Russell R. Broaddus, Hui Chen, Asif Rashid, Alex J. Lazar, Francis Anthony San Lucas, Hui Yao et al. · 2021 · Archives of Pathology & Laboratory Medicine
- Discovery of a rare GKAP1-NTRK2 fusion in a pediatric low-grade glioma, leading to targeted treatment with TRK-inhibitor larotrectinibLily Deland, Simon Keane, Thomas Olsson Bontell, Helene Sjögren, Henrik Fagman, Ingrid Øra, Esther A. De La Cuesta, Magnus Tisell, Jonas A. Nilsson, Katarina Ejeskär et al. · 2021 · Cancer Biology & Therapy
- TEX10 Promotes the Tumorigenesis and Radiotherapy Resistance of Urinary Bladder Carcinoma by Stabilizing XRCC6Sheng Luo, Wenjin Wang, Jingfang Feng, Rui Li · 2021 · Journal of Immunology Research
- Experimentally Deduced Criteria for Detection of Clinically Relevant Fusion 3′ Oncogenes from FFPE Bulk RNA Sequencing DataElizaveta Rabushko, Maxim Sorokin, Maria Suntsova, Alexander P. Seryakov, Denis Kuzmin, Elena V Poddubskaya, Anton A. Buzdin · 2022 · Biomedicines
- TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependenceGongwei Wu, Noriaki Yoshida, Jihe Liu, Xiaoyang Zhang, Yuan Xiong, Tayla B. Heavican, Elisa Mandato, Huiyun Liu, Geoffrey M. Nelson, Lu Yang et al. · 2023 · Science Translational Medicine
- Fusion Challenges in Solid Tumors: Shaping the Landscape of Cancer Care in Precision MedicineJibran Ahmed, Carlos Torrado, Anca Chelariu-Raicu, Sunhee Kim, Jordi Ahnert Rodon · 2024 · JCO Precision Oncology
- Identification of a novel fusion gene HMGA2‐EGFR in glioblastomaAkiyoshi Komuro, Erna Raja, Caname Iwata, Manabu Soda, Kazunobu Isogaya, Keiko Yuki, Yasushi Ino, Masato Morikawa, Tomoki Todo, Hiroyuki Aburatani et al. · 2017 · International Journal of Cancer
- The CTNNBIP1-CLSTN1 fusion transcript regulates human neocortical developmentMin‐Yi Ou, Qi Xiao, Xiang-Chun Ju, Peng-Ming Zeng, Jing Huang, Ai-Li Sheng, Zhen‐Ge Luo · 2021 · Cell Reports
- Domain retention in transcription factor fusion genes and its biological and clinical implications: a pan-cancer studyPora Kim, Leomar Y. Ballester, Zhongming Zhao · 2017 · Oncotarget
- Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolutionQian Qin, Victoria Popic, Kirsty Wienand, Houlin Yu, Emily White, Akanksha Khorgade, Asa Shin, Christophe Georgescu, Catarina D. Campbell, Arthur Dondi et al. · 2025 · Genome Research
- SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpointsYiqun Zhang, Fengju Chen, Chad J. Creighton · 2021 · BMC Bioinformatics
- Re-Evaluate Fusion Genes in Prostate CancerTing Wei, Lu Ji, Tao Ma, Haojie Huang, Jean-Pierre A. Kocher, Liguo Wang · 2021 · Cancer Informatics
- FaNDOM: Fast nested distance-based seeding of optical mapsSiavash R. Dehkordi, Jens Luebeck, Vineet Bafna · 2021 · Patterns
- ZNF507 affects TGF-β signaling via TGFBR1 and MAP3K8 activation in the progression of prostate cancer to an aggressive stateWookbong Kwon, Seong‐Kyoon Choi, Dae-Hwan Kim, Hyeon‐Gyeom Kim, Jin‐Kyu Park, Jee Eun Han, Gil‐Jae Cho, Sungho Yun, Wookyung Yu, Se‐Hyeon Han et al. · 2021 · Journal of Experimental & Clinical Cancer Research
- Novel transcription-induced fusion RNAs in prostate cancerSen Zhao, Marthe Løvf, Kristina Totland Carm, Anne Cathrine Bakken, Andreas Hoff, Rolf Inge Skotheim · 2017 · Oncotarget
- Functional comparison of exome capture-based methods for transcriptomic profiling of formalin-fixed paraffin-embedded tumorsKyrillus Samaan Shohdy, Rohan Bareja, Michael Sigouros, David C. Wilkes, Princesca Dorsaint, Jyothi Manohar, Daniel Bockelman, Jenny Xiang, Rob Kim, Kentaro Ohara et al. · 2021 · npj Genomic Medicine
- Analysis of CD74 Occurrence in Oncogenic Fusion Proteins2023
- Genomics-Enabled Precision Medicine for CancerAlison Roos, Sara Ann Byron · 2019 · Cancer treatment and research
- t(4;12)(q12;p13) ETV6-rearranged AML without eosinophilia does not involve PDGFRA: relevance for imatinib insensitivitySarah B. Mueller, Paola Dal Cin, Long P. Le, Dora C. Dias-Santagata, Jochen K. Lennerz, Anthony John Iafrate, Hetal D. Marble, Andrew Mark Brunner, Matthew J. Weinstock, Marlise Rachael Luskin et al. · 2021 · Blood Advances
- Implementing targeted therapies in the treatment of glioblastoma: Previous shortcomings, future promises, and a multimodal strategy recommendationVincent Fougner, Benedikte Hasselbalch, Ulrik Lassen, Joachim Weischenfeldt, Hans Skovgaard Poulsen, Thomas Haargaard Urup · 2022 · Neuro-Oncology Advances
- Enhancement of Gene Editing and Base Editing with Therapeutic Ribonucleoproteins through In Vivo Delivery Based on Absorptive Silica NanoconstructSeongchan Kim, You Kyeong Jeong, Chang Sik Cho, SeokHoon Lee, Chang Ho Sohn, Jeong Hun Kim, Youngdo Jeong, Dong Hyun Jo, Sangsu Bae, Hyojin Lee · 2022 · Advanced Healthcare Materials
- New chimeric RNAs in acute myeloid leukemiaFlorence Rufflé, Jerome Audoux, Anthony Boureux, Sacha Beaumeunier, Jean‐Baptiste Gaillard, Elias Bou Samra, André Mégarbané, Bruno Cassinat, Christine Chomienne, Ronnie Cley de Oliveira Alves et al. · 2017 · F1000Research
- Identification of a Novel Oncogenic Fusion Gene SPON1-TRIM29 in Clinical Ovarian Cancer That Promotes Cell and Tumor Growth and Enhances Chemoresistance in A2780 CellsSaya Nagasawa, Kazuhiro Ikeda, Daisuke Shintani, Chiujung Yang, Satoru Takeda, Kosei Hasegawa, Kuniko Horie, Satoshi Inoue · 2022 · International Journal of Molecular Sciences
- Comprehensive drug response profiling and pan-omic analysis identified therapeutic candidates and prognostic biomarkers for Asian cholangiocarcinomaSupawan Jamnongsong, Patipark Kueanjinda, Pongsakorn Buraphat, Phuwanat Sakornsakolpat, Kulthida Vaeteewoottacharn, Seiji Okada, Siwanon Jirawatnotai, Somponnat Sampattavanich · 2022 · iScience
- C16ORF70/MYTHO promotes healthy aging in C.elegans and prevents cellular senescence in mammalsAnaïs Franco‐Romero, Valeria Morbidoni, Giulia Milan, Roberta Sartori, Jesper Wulff, Vanina Romanello, Andrea Armani, Leonardo Salviati, Maria Conte, Stefano Salvioli et al. · 2024 · Journal of Clinical Investigation
- Pure Apocrine Intraductal Carcinoma of Salivary Glands: Reassessment of Molecular Underpinnings and BehaviorLuvy Delfin, Jan Johannes Doff, Jeffrey Gagan, Allen B. Flack, Jeffrey F. Krane, Vickie Y. Jo, Alan G. Torell, Doreen N. Palsgrove, Justin A. Bishop · 2024 · Head and Neck Pathology
- GraphChrom: A Novel Graph-Based Framework for Cancer Classification Using Chromosomal Rearrangement EndpointsGolrokh Mirzaei · 2022 · Cancers
- Target-dependent RNA polymerase as universal platform for gene expression control in response to intracellular moleculesShodai Komatsu, Hirohisa Ohno, Hirohide Saito · 2023 · Nature Communications
- Oncogenic Effect of the Novel Fusion Gene VAPA-Rab31 in Lung AdenocarcinomaDaseul Yoon, Kieun Bae, Jin-Hee Kim, Yang‐Kyu Choi, Kyong‐Ah Yoon · 2019 · International Journal of Molecular Sciences
- Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA–minus RNA sequencing dataYouri Hoogstrate, Malgorzata A. Komor, René Böttcher, Job van Riet, Harmen J.G. van de Werken, Stef van Lieshout, Ralf Hoffmann, Evert van den Broek, Anne S. Bolijn, Natasja F. J. Dits et al. · 2021 · GigaScience
- Novel fusion genes and chimeric transcripts in ependymal tumorsThale Kristin Olsen, Ioannis Panagopoulos, Ludmila Gorunova, Francesca Micci, Kristin Andersen, Hege Kilen Andersen, Torstein Ragnar Meling, Bernt Johan Due‐Tønnessen, David Scheie, Sverre Heim et al. · 2016 · Genes Chromosomes and Cancer
- Clinical Implications and Treatment Strategies for ESR1 Fusions in Hormone Receptor-Positive Metastatic Breast Cancer: A Case SeriesJamie O. Brett, Lauren L. Ritterhouse, Erik T. Newman, Kelly Edwards Irwin, Megan Dawson, Lianne Y. Ryan, Laura M. Spring, Miguel N. Rivera, Jochen K. Lennerz, Dora C. Dias-Santagata et al. · 2022 · The Oncologist
- PRKC Fusion Melanocytic Tumors, a Subgroup of Melanocytic Tumors More Closely Aligned to Blue Nevi Than to PRKAR1A-inactivated Pigmented Epithelioid MelanocytomasPragi Patel, Alice P. Chen, Natasha Sharma, Yongzhan Zhang, Victor Li Quan, Shantel Olivares, Pedram Gerami · 2024 · The American Journal of Surgical Pathology
- TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq dataReadman Chiu, Ka Ming Nip, Justin Chu, İnanç Birol · 2018 · BMC Medical Genomics
- A long-term survivor of pediatric midline glioma with H3F3A K27M and BRAF V600E double mutationsYoshiko Nakano, Kai Yamasaki, Hiroaki Sakamoto, Yasuhiro Matsusaka, Noritsugu Kunihiro, Hiroko Fukushima, Takeshi Inoue, Mai Honda‐Kitahara, Junichi Hara, Akihiko Yoshida et al. · 2019 · Brain Tumor Pathology
- RAP80 suppresses the vulnerability of R-loops during DNA double-strand break repairTakaaki Yasuhara, Reona Kato, Motohiro Yamauchi, Yuki Uchihara, Lee Zou, Kiyoshi Miyagawa, Atsushi Shibata · 2022 · Cell Reports
- FARE-CAFE: a database of functional and regulatory elements of cancer-associated fusion eventsPraveen Kumar Korla, Jack Cheng, Chien‐Hung Huang, Jeffrey J. P. Tsai, Yu-Hsuan Liu, Nilubon Kurubanjerdjit, Wen‐Tsong Hsieh, Huey-Yi Chen, Ka‐Lok Ng · 2015 · Database
- Gene of the month: DDIT3Julio Alexander Díaz-Pérez, Darcy A. Kerr · 2023 · Journal of Clinical Pathology
- Evaluation of BIRC6 Expression in Oral Squamous Cell Carcinoma, Epithelial Dysplasia, Lichen Planus with and without Dysplasia, and HyperkeratosisFateme Eskandari, Alireza Razavian, Razieh Zare, Shayan Ejlali, Alireza Razmahang, Milad Zanjani, Seyedeh Sara Aghili, Mohammad Amin Mahdiyar, Hossein Mofidi, Kamyar Abbasi et al. · 2023 · Diagnostics
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- Identification of STRBP as a Novel JAK2 Fusion Partner Gene in a Young Adult With Philadelphia Chromosome-Like B-Lymphoblastic LeukemiaXinyue Zhang, Haiping Dai, Zheng Li, Jia Yin, Xingping Lang, Chunxiao Yang, Sheng Xiao, Mingqing Zhu, Dandan Liu, Hong Liu et al. · 2021 · Frontiers in Oncology
- Gene fusions in tumourigenesis with particular reference to ovarian cancerYi Zhou, Mona A El-Bahrawy · 2021 · Journal of Medical Genetics
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- Fusion proteins in lung cancer: addressing diagnostic problems for deciding therapyFederica Zito Marino, Greta Alì, Francesco Facchinetti, Luisella Righi, Gabriella Fontanini, Giulio Rossi, Renato Franco · 2021 · Expert Review of Anticancer Therapy
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- Real-World Clinical Performance of a DNA-Based Comprehensive Genomic Profiling Assay for Detecting Targetable Fusions in Nonsquamous NSCLCPhilip C. Mack, Rachel B. Keller-Evans, Gerald Li, Katherine T Lofgren, Alexa Betzig Schrock, Sally E. Trabucco, Justin M. Allen, Khaled A. Tolba, Geoffrey R. Oxnard, Richard S.P. Huang · 2024 · The Oncologist
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- Low Prevalence of ETV6::RUNX1 Fusion Gene in a Hispanic PopulationMinerva Mata‐Rocha, Angélica Rangel-López, Elva Jiménez‐Hernández, Juan Carlos Núñez-Enríquez, Blanca Angélica Morales-Castillo, Norberto Sánchez-Escobar, Omar Alejandro Sepúlveda Robles, Juan Carlos Bravata-Alcántara, Alan Steve Nájera-Cortés, Maria Luisa Pérez‐Saldívar et al. · 2022 · Frontiers in Pediatrics
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