Cited by 12Genetic Neurodegenerative DiseasesDNA Repair MechanismsHereditary Neurological Disorders

Characterization of a novel loss-of-function variant in TDP2 in two adult patients with spinocerebellar ataxia autosomal recessive 23 (SCAR23)

Open access
Errichiello, Edoardo, Zagnoli-Vieira, Guido, Rizzi, Romana, Garavelli, Livia, Caldecott, Keith W., Zuffardi, Orsetta·2020·Journal of Human Genetics

Abstract

TDP2 encodes a 5'-tyrosyl DNA phosphodiesterase required for the efficient repair of double-strand breaks (DSBs) induced by the abortive activity of DNA topoisomerase II (TOP2). To date, only three homozygous variants in TDP2 have been reported in six patients from four unrelated pedigrees with spinocerebellar ataxia 23 (SCAR23). By whole-exome sequencing, we identified a novel TDP2 splice-site variant (c.636 + 3_636 + 6del) in two Italian siblings (aged 40 and 45) showing progressive ataxia, intellectual disability, speech delay, refractory seizures, and various physical anomalies. The variant caused exon 5 skipping with consequent nonsense-mediated mRNA decay and defective repair of TOP2-induced DSBs, as demonstrated by the functional assays on the patients' fibroblasts. Our findings further demonstrate the pathogenic role of TDP2 biallelic loss-of-function variants in SCAR23 pathogenesis. Considering the age of our patients, the oldest reported to date, and their extensive follow-up, our study delineates in more detail the clinical phenotype related to the loss of TDP2 activity.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s10038-020-0800-4

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

The citation lists haven’t been fetched yet

References 25 · Cited by 12

Research works printed but not linked: 6

  1. Chen, T., Sun, Y., Ji, P., Kopetz, S., Zhang, W. (2015). Topoisomerase IIα in chromosome instability and personalized cancer therapy.Oncogene, 34 (31):4019-31.
  2. Ferrari, S., Giliani, S., Insalaco, A., Al-Ghonaium, A., Soresina, A.R., Loubser, M., . . . Plebani, A. (2001). Mutations of CD40 gene cause an autosomal recessive form of immunodeficiency with hyper IgM.Proceedings of the National Academy of Sciences USA ,98 (22):12614-9.
  3. Francks, C., Paracchini, S., Smith, S. D., Richardson, A. J., Scerri, T. S., Cardon, L. R. (2004). A 77-kilobase region of chromosome 6p22.2 is associated with dyslexia in families from the United Kingdom and from the United States. The American Journal of Human Genetics, 75 (6):1046-58.
  4. Liu, T., Zhang, H., Yi, S., Gu, L., Zhou, M. (2019). Mutual regulation of MDM4 and TOP2A in cancer cell proliferation. Molecular Oncology, 13 (5):1047-1058.
  5. McKinnon, P. J. (2014). TDP2 keeps the brain healthy. Nature Genetics, 46 (5):419-21.
  6. Pype, S., Declercq, W., Ibrahimi, A., Michiels, C., Van Rietschoten, J. G., Dewulf, N., de Boer, M., Van- denabeele, P., Huylebroeck, D., Remacle, J. E. (2000). TTRAP, a novel protein that associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor-associated factors (TRAFs), and that inhibits nuclear factor-kappa B activation. The Journal of Biological Chemistry, 275 (24):18586-93.

Authors
Errichiello, E., Zagnoli-Vieira, G., Rizzi, R., Garavelli, L., Caldecott, K. W., & Zuffardi, O.
Affiliations
  • University of Pavia (IT)
  • University of Sussex (GB)
  • Azienda Sanitaria Unità Locale di Reggio Emilia (IT)
Corresponding author
Errichiello, Edoardo
Venue
Journal of Human Genetics
Published
2020-07-10
Volume
65
Issue
12
Pages
1135-1141
ISSN
  • 1434-5161 (ISSN-L)
  • 1435-232X
OpenAlex
W3041627605
Cited by
12
References
25
Citations by year
2025: 2 · 2024: 2 · 2023: 2 · 2022: 3 · 2021: 3
FWCI
0.92
Type
journal article
Language
en
Open access
Locations
  • Journal of Human Genetics (publishedVersion)
  • PubMed (publishedVersion)
Funders
Cancer Research UK (16771)
Topics
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Hereditary Neurological Disorders
Keywords
TDP2, loss-of-function mutations, splice site mutation, exon skipping, nonsense-mediated mRNA decay, topoisomerase II, intellectual disability, refractory seizures, clinical phenotype, adult-onset ataxia
MeSH terms
Loss of Function Mutation, Adult, DNA-Binding Proteins, Female, Genes, Recessive, Humans, Male, Intellectual Disability, Middle Aged, Phosphoric Diester Hydrolases, Spinocerebellar Ataxias

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review