Further delineation of BCAP31‐linked intellectual disability: description of 17 new families with LoF and missense variants
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Similar features were reported in another male infant with a 60 kb deletion including BCAP31, ABCD1, and PLXNB3 who died of respiratory failure at 16 months.
“Similar features were reported in another male infant with a 60 kb deletion including BCAP31, ABCD1, and PLXNB3 who died of respiratory failure at 16 months, 9”
From Interstitial lung disease and pancreatic exocrine insufficiency in <scp>CADDS</scp>: Phenotypic expansion and literature review (2023) · cites this paper as [9]
Congenital heart disease did not feature in any of the CADDS patients with PLXNB3 involvement.
“congenital heart disease did not feature in any of the CADDS patients with PLXNB3 involvement.”
From Interstitial lung disease and pancreatic exocrine insufficiency in <scp>CADDS</scp>: Phenotypic expansion and literature review (2023) · cites this paper as [9]
The “Male patient with CADDS” section (page unavailable) identifies a patient whose deletion included PLXNB3, but does not state whether he had congenital heart disease. The passages on CADDS and adjacent-gene deletions (page unavailable) likewise do not address congenital heart disease; searches for heart and cardiac anomalies found no decisive passage. An omitted feature is not evidence that it was absent in every patient. (LLM, conf=0.72)
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Richards, S., Aziz, N., Bale, S., Bick, D., Das, S., Gastier-Foster, J., Grody, W. W., Hegde, M., Lyon, E., Spector, E., et al. (2015) · Genetics in Medicine · doi:10.1038/gim.2015.30 · Cited by 32,594 · see citing works
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Research works printed but not linked: 24
- Manley HA, Lennon VA. Endoplasmic reticulum membrane-sorting protein of lymphocytes (BAP31) is highly expressed in neurons and discrete endocrine cells. J Histochem Cytochem Off J Histochem Soc. oct 2001;49(10):1235 43.
- Bell AW, Ward MA, Blackstock WP, Freeman HN, Choudhary JS, Lewis AP, et al. Proteomics characterization of abundant Golgi membrane proteins. J Biol Chem. 16 févr 2001;276(7):5152 65.
- Annaert WG, Becker B, Kistner U, Reth M, Jahn R. Export of cellubrevin from the endoplasmic reticulum is controlled by BAP31. J Cell Biol. 15 déc 1997;139(6):1397 410.
- Paquet M-E, Cohen-Doyle M, Shore GC, Williams DB. Bap29/31 Influences the Intracellular Traffic of MHC Class I Molecules. J Immunol. 15 juin 2004;172(12):7548 55.
- Geiger R, Andritschke D, Friebe S, Herzog F, Luisoni S, Heger T, et al. BAP31 and BiP are essential for dislocation of SV40 from the endoplasmic reticulum to the cytosol. Nat Cell Biol. nov 2011;13(11):1305 14.
- Wakana Y, Takai S, Nakajima K, Tani K, Yamamoto A, Watson P, et al. Bap31 Is an Itinerant Protein That Moves between the Peripheral Endoplasmic Reticulum (ER) and a Juxtanuclear Compartment Related to ER-associated Degradation. Linstedt A, éditeur. Mol Biol Cell. mai 2008;19(5):1825 36.
- Cacciagli P, Sutera-Sardo J, Borges-Correia A, Roux J-C, Dorboz I, Desvignes J-P, et al. Mutations in BCAP31 cause a severe X-linked phenotype with deafness, dystonia, and central hypomyelination and disorganize the Golgi apparatus. Am J Hum Genet. 5 sept 2013;93(3):579 86.
- Albanyan S, Al Teneiji A, Monfared N, Mercimek-Mahmutoglu S. BCAP31- associated encephalopathy and complex movement disorder mimicking mitochondrial encephalopathy. Am J Med Genet A. juin 2017;173(6):1640 3.
- Shimizu K, Oba D, Nambu R, Tanaka M, Oguma E, Murayama K, et al. Possible mitochondrial dysfunction in a patient with deafness, dystonia, and cerebral hypomyelination (DDCH) due to BCAP31 Mutation. Mol Genet Genomic Med. 2020 Mar;8(3):e1129.
- Vittal P, Hall DA, Dames S, Mao R, Berry-Kravis E. BCAP31 Mutation Causing a Syndrome of Congenital Dystonia, Facial Dysorphism and Central Hypomyelination Discovered Using Exome Sequencing. Mov Disord Clin Pract. avr 2016;3(2):197 9.
- Engelen M, Kemp S, de Visser M, van Geel BM, Wanders RJ, Aubourg P, et al. X-linked adrenoleukodystrophy (X-ALD): clinical presentation and guidelines for diagnosis, follow-up and management. Orphanet J Rare Dis. 2012;7(1):51.
- van de Kamp JM, Betsalel OT, Mercimek-Mahmutoglu S, Abulhoul L, Grünewald S, Anselm I, et al. Phenotype and genotype in 101 males with X-linked creatine transporter deficiency. J Med Genet. juill 2013;50(7):463 72.
- Corzo D, Gibson W, Johnson K, Mitchell G, LePage G, Cox GF, et al. Contiguous Deletion of the X-Linked Adrenoleukodystrophy Gene (ABCD1) and DXS1357E: A Novel Neonatal Phenotype Similar to Peroxisomal Biogenesis Disorders. Am J Hum Genet. juin 2002;70(6):1520 31.
- Calhoun ARUL, Raymond GV. Distal Xq28 microdeletions: clarification of the spectrum of contiguous gene deletions involving ABCD1, BCAP31, and SLC6A8 with a new case and review of the literature. Am J Med Genet A. oct 2014;164A(10):2613 7.
- Iwasa M, Yamagata T, Mizuguchi M, Itoh M, Matsumoto A, Hironaka M, et al. Contiguous ABCD1 DXS1357E deletion syndrome: report of an autopsy case. Neuropathol Off J Jpn Soc Neuropathol. juin 2013;33(3):292 8.
- Osaka H, Takagi A, Tsuyusaki Y, Wada T, Iai M, Yamashita S, et al. Contiguous deletion of SLC6A8 and BAP31 in a patient with severe dystonia and sensorineural deafness. Mol Genet Metab. mai 2012;106(1):43 7.
- van de Kamp JM, Errami A, Howidi M, Anselm I, Winter S, Phalin-Roque J, et al. Genotype-phenotype correlation of contiguous gene deletions of SLC6A8, BCAP31 and ABCD1. Clin Genet. févr 2015;87(2):141 7.
- Firouzabadi SG, Kariminejad R, Vameghi R, Darvish H, Ghaedi H, Banihashemi S, et al. Copy Number Variants in Patients with Autism and Additional Clinical Features: Report of VIPR2 Duplication and a Novel Microduplication Syndrome. Mol Neurobiol. nov 2017;54(9):7019 27.
- Anselm IM, Alkuraya FS, Salomons GS, Jakobs C, Fulton AB, Mazumdar M, et al. X-linked creatine transporter defect: A report on two unrelated boys with a severe clinical phenotype. J Inherit Metab Dis. févr 2006;29(1):214 9.
- Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho Y-Y, et al. Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria. Genet Med Off J Am Coll Med Genet. 2017;19(10):1105 17.
- Rosenberg C, Freitas ÉL, Uehara DT, Auricchio MTBM, Costa SS, Oiticica J, et al. Genomic copy number alterations in non-syndromic hearing loss. Clin Genet. avr 2016;89(4):473 7.
- Alford RL, Arnos KS, Fox M, Lin JW, Palmer CG, Pandya A, et al. American College of Medical Genetics and Genomics guideline for the clinical evaluation and etiologic diagnosis of hearing loss. Genet Med Off J Am Coll Med Genet. avr 2014;16(4):347 55.
- Oza AM, DiStefano MT, Hemphill SE, Cushman BJ, Grant AR, Siegert RK, et al. Expert specification of the ACMG/AMP variant interpretation guidelines for genetic hearing loss. Hum Mutat. 2018;39(11):1593 613.
- Xu J-L, Li L-Y, Wang Y-Q, Li Y-Q, Shan M, Sun S-Z, et al. Hepatocyte-specific deletion of BAP31 promotes SREBP1C activation, promotes hepatic lipid accumulation, and worsens IR in mice. J Lipid Res. 2018;59(1):35 47.
Cited by
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Heath, O., Pandithan, D., Pitt, J., Savva, E., Raiti, L., Bracken, J., Vandeleur, M., Delatycki, M. B., Yaplito‐Lee, J., Hardikar, W., et al. (2023) · JIMD Reports · doi:10.1002/jmd2.12390 · Cited by 2 · see citing works
- Authors
- Whalen, S., Shaw, M., Mignot, C., Héron, D., Bastaraud, S. C., Walti, C. C., Liebelt, J., Elmslie, F., Yap, P., Hurst, J., Forsythe, E., Kirmse, B., Ozmore, J., Spinelli, A. M., Calabrese, O., de Villemeur, T. B., Tabet, A. C., Levy, J., Guet, A., Kossorotoff, M., Kamien, B., Morton, J., McCabe, A., Brischoux-Boucher, E., Raas-Rothschild, A., Pini, A., Carroll, R., Hartley, J. N., Care4Rare Canada Consortium, Boycott, K., Brudno, M., Bernier, F., van Karnebeek, C., Dyment, D., Kernohan, K., Innes, M., Lamont, R., Parboosingh, J., Marshall, D., Marshall, C., Mendoza, R., Dowling, J., Hayeems, R., Knoppers, B., Lehman, A., Mostafavi, S., Frosk, P., Slavotinek, A., Truxal, K., Jennifer, C., Dheedene, A., Cui, H., Kumar, V., Thomson, G., Riccardi, F., Gecz, J., & Villard, L.
- Affiliations
- Sorbonne Université (FR)
- The University of Adelaide (AU)
- Women's and Children's Hospital (AU)
- St George's Hospital (GB)
- Great Ormond Street Hospital (GB)
- University of Mississippi Medical Center (US)
- Dartmouth–Hitchcock Medical Center (US)
- University of Modena and Reggio Emilia (IT)
- Assistance Publique – Hôpitaux de Paris (FR)
- Hôpital Necker-Enfants Malades (FR)
- King Edward Memorial Hospital (AU)
- Birmingham Women's Hospital (GB)
- Istituto delle Scienze Neurologiche di Bologna (IT)
- University of Manitoba (CA)
- University of Ottawa (CA)
- University of Toronto (CA)
- Children's Hospital of Eastern Ontario (CA)
- University of Calgary (CA)
- McGill University (CA)
- University of British Columbia (CA)
- University of California, San Francisco (US)
- Nationwide Children's Hospital (US)
- Ghent University Hospital (BE)
- San Francisco General Hospital (US)
- Starship Children's Health (NZ)
- Inserm (FR)
- Corresponding author
- Whalen, Sandra
- ORCID
- Whalen, Sandra
- Mignot, Cyril
- Héron, Delphine
- Elmslie, Frances
- Yap, Patrick
- Kirmse, Brian
- Spinelli, Alessandro Mauro
- Calabrese, Olga
- Kossorotoff, Manoëlle
- Kamien, Benjamin
- McCabe, Anne
- Brischoux-Boucher, Elise
- Carroll, Renée
- Hartley, Jessica N.
- Boycott, Kym
- Brudno, Michael
- Dyment, David
- Kernohan, Kristin
- Lamont, Ryan
- Marshall, Deborah
- Marshall, Christian
- Dowling, James
- Hayeems, Robin
- Knoppers, Bartha
- Mostafavi, Sara
- Frosk, Patrick
- Slavotinek, Anne
- Truxal, Kristen
- Jennifer, Carroll
- Dheedene, Annelies
- Cui, Hong
- Kumar, Vishal
- Riccardi, Florence
- Gecz, Jozef
- Villard, Laurent
- Venue
- European Journal of Human Genetics
- Published
- 2021-02-18
- Volume
- 29
- Issue
- 9
- Pages
- 1405-1417
- ISSN
- 1018-4813 (ISSN-L)
- 1476-5438
- PMC
- PMC8440520
- OpenAlex
- W3130280597
- Cited by
- 15
- References
- 1
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 3 · 2023: 2 · 2022: 2
- FWCI
- 0.99
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- European Journal of Human Genetics (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Ghent University Academic Bibliography (Ghent University) (publishedVersion)
- HAL (submittedVersion, other-oa)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- Ghent University Academic Bibliography (Ghent University) (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Pure Amsterdam UMC (submittedVersion, cc-by)
- Funders
- U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (U01HG009599)
- GeneDx
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Hereditary Neurological Disorders
- Keywords
- BCAP31, BAP31, intellectual disability, deafness, dystonia, contiguous gene deletion, ABCD1, SLC6A8, cholestatic liver disease, loss-of-function mutations, missense mutations, female carriers, Xq28, ER-Golgi transport
- MeSH terms
- Loss of Function Mutation, Adolescent, Adult, Child, Child, Preschool, Deafness, Female, Humans, Male, Membrane Proteins, Intellectual Disability, Pedigree, Phenotype, Syndrome, Mutation, Missense, Hereditary Central Nervous System Demyelinating Diseases
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