Cited by 290Lignin and Wood ChemistryPolysaccharides and Plant Cell WallsBiofuel production and bioconversion

Carbohydrate-aromatic interface and molecular architecture of lignocellulose

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Kirui, Alex, Zhao, Wancheng, Deligey, Fabien, Yang, Hui, Kang, Xue, Mentink-Vigier, Frederic, Wang, Tuo·2022·Nature Communications

Abstract

Plant cell walls constitute the majority of lignocellulosic biomass and serve as a renewable resource of biomaterials and biofuel. Extensive interactions between polysaccharides and the aromatic polymer lignin make lignocellulose recalcitrant to enzymatic hydrolysis, but this polymer network remains poorly understood. Here we interrogate the nanoscale assembly of lignocellulosic components in plant stems using solid-state nuclear magnetic resonance and dynamic nuclear polarization approaches. We show that the extent of glycan-aromatic association increases sequentially across grasses, hardwoods, and softwoods. Lignin principally packs with the xylan in a non-flat conformation via non-covalent interactions and partially binds the junction of flat-ribbon xylan and cellulose surface as a secondary site. All molecules are homogeneously mixed in softwoods; this unique feature enables water retention even around the hydrophobic aromatics. These findings unveil the principles of polymer interactions underlying the heterogeneous architecture of lignocellulose, which may guide the rational design of more digestible plants and more efficient biomass-conversion pathways.

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  • Such structural rearrangements have been observed in the xylan of the secondary cell walls across various plant species, where folding onto the flat surfaces of cellulose microfibrils induces a conformational shift from a three-fold helical structure to a flat, two-fold conformation.

    “Such structural rearrangements have been observed in the xylan of the secondary cell walls across various plant species, where folding onto the flat surfaces of cellulose microfibrils induces a conformational shift from a three-fold helical structure to a flat, two-fold conformation92–94.”

    From Distinct echinocandin responses of Candida albicans and Candida auris cell walls revealed by solid-state NMR (2025) · cites this paper as [94]

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References 85 · Cited by 290

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  1. [2]Somerville C Youngs H Taylor C Davis SC Long SP Feedstocks for lignocellulosic biofuels Science 2010 329 790 792 20705851
  2. [3]Moon RJ Martini A Nairn J Simonsen J Youngblood J Cellulose nanomaterials review: structure, properties and nanocomposites Chem. Soc. Rev. 2011 40 3941 3994 21566801
  3. [4]Himmel ME Biomass recalcitrance: engineering plants and enzymes for biofuels production Science 2007 315 804 805 17289988
  4. [5]McCann MC Carpita NC Biomass recalcitrance: a multi-scale, multi-factor, and conversion-specific property J. Exp. Bot. 2015 66 4109 4118 26060266
  5. [6]Loque D Scheller HV Pauly M Engineering of plant cell walls for enhanced biofuel production Curr. Opin. Plant Biol. 2015 25 151 161 26051036
  6. [7]Ragauskas AJ Lignin valorization: improving lignin processing in the biorefinery Science 2014 344 1246843 24833396
  7. [8]Cai Y Enhancing digestibility and ethanol yield of Populus wood via expression of an engineered monolignol 4-O-methyltransferase Nat. Commun. 2016 7 11989 27349324 PMC4931242
  8. [9]Purushotham P Ho R Zimmer J Architecture of a catalytically active homotrimeric plant cellulose synthase complex Science 2020 369 1089 1094 32646917
  9. [10]Jarvis M Chemistry: cellulose stacks up Nature 2003 426 611 612 14668842
  10. [12]Fernandes AN Nanostructure of cellulose microfibrils in spruce wood Proc. Natl Acad. Sci. USA 2011 108 E1195 E1203 22065760 PMC3223458
  11. [13]Thomas LH Nanostructural deformation of high-stiffness spruce wood under tension Sci. Rep. 2021 11 453 33432070 PMC7801420
  12. [14]Vanholme R Demedts B Morreel K Ralph J Boerjan W Lignin biosynthesis and structure Plant Physiol. 2010 153 895 905 20472751 PMC2899938
  13. [16]Cosgrove DJ Jarvis MC Comparative structure and biomechanics of plant primary and secondary cell walls Front. Plant Sci. 2012 3 204 22936943 PMC3424969
  14. [17]Du X Analysis of lignin-carbohydrate and lignin-lignin linkages after hydrolase treatment of xylan-lignin, glucomannan-lignin and glucan-lignin complexes from spruce wood Planta 2014 239 1079 1090 24531838
  15. [18]Giummarella N Pu Y Ragauskas AJ Lawoko M A critical review on the analysis of lignin carbohydrate bonds Green Chem. 2019 21 1573 1595
  16. [19]Zhang T Vavylonis D Durachko DM Cosgrove DJ Nanoscale movements of cellulose microfibrils in primary cell walls Nat. Plants 2017 3 17056 28452988 PMC5478883
  17. [20]Reif B Ashbrook SE Emsley L Hong M Solid-state NMR spectroscopy Nat. Rev. Methods Primers 2021 1 2 34368784 PMC8341432
  18. [21]Zhao W Fernando LD Kirui A Deligey F Wang T Solid-state NMR of plant and fungal cell walls: a critical review Solid State Nucl. Magn. Reson. 2020 107 101660 32251983
  19. [22]Grantham NJ An even pattern of xylan substitution is critical for interaction with cellulose in plant cell walls Nat. Plants 2017 3 859 865 28993612
  20. [24]Kang X Lignin-polysaccharide interactions in plant secondary cell walls revealed by solid-state NMR Nat. Commun. 2019 10 347 30664653 PMC6341099
  21. [25]Dupree R Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional 13C solid state nuclear magnetic resonance spectroscopy Biochemistry 2015 54 2335 2345 25739924
  22. [26]Simmons BA Loque D Blanch HW Next-generation biomass feedstocks for biofuel production Genome Biol. 2008 9 242 19133109 PMC2646290
  23. [27]Phyo P Wang T Yang Y O’Neill H Hong M Direct determination of hydroxymethyl conformations of plant cell wall cellulose using 1H polarization transfer solid-state NMR Biomacromolecules 2018 19 1485 1497 29562125
  24. [28]Wang T Yang H Kubicki JD Hong M Cellulose structural polymorphism in plant primary cell walls investigated by high-field 2D solid-state NMR spectroscopy and density functional theory calculations Biomacromolecules 2016 17 2210 2222 27192562 PMC5270591
  25. [29]Terrett OM Molecular architecture of softwood revealed by solid-state NMR Nat. Commun. 2019 10 4978 31673042 PMC6823442
  26. [30]Rencoret J Lignin composition and structure in young versus adult eucalyptus globulus plants Plant Physiol 2011 155 667 682 21098672 PMC3032458
  27. [31]Rinaldi R Paving the way for lignin valorisation: recent advances in bioengineering, biorefining and catalysis Angew. Chem. Int. Ed. 2016 55 8164 8215 PMC6680216 27311348
  28. [34]Li M The effect of liquid hot water pretreatment on the chemical–structural alteration and the reduced recalcitrance in poplar Biotechnol. Biofuels 2017 10 237 29213308 PMC5707831
  29. [37]Su Y Andreas L Griffin RG Magic angle spinning NMR of proteins: high-frequency dynamic nuclear polarization and 1H detection Annu. Rev. Biochem. 2015 84 465 497 25839340
  30. [38]Mentink-Vigier F Akbey U Oschkinat H Vega S Feintuch A Theoretical aspects of magic angle spinning—-dynamic nuclear polarization J. Magn. Reson. 2015 258 102 120 26232770
  31. [39]Rossini AJ Dynamic nuclear polarization surface enhanced NMR spectroscopy Acc. Chem. Res. 2013 46 1942 1951 23517009
  32. [40]Yang H Quantum calculations on plant cell wall component interactions Interdis. Sci 2019 11 485 495 29582245
  33. [41]Cresswell R Importance of water in maintaining softwood secondary cell wall nanostructure Biomacromolecules 2021 8 4669 4680 PMC8579401 34669375
  34. [42]Gao Y Lipton AS Wittmer Y Murray DT Mortimer JC A grass-specific cellulose-xylan interaction dominates in sorghum secondary cell walls Nat. Commun. 2020 11 6081 33247125 PMC7695714
  35. [43]Wang T Park YB Cosgrove DJ Hong M Cellulose-pectin spatial contacts are inherent to never-dried Arabidopsis thaliana primary cell walls: evidence from solid-state NMR Plant Physiol 2015 168 871 884 26036615 PMC4741345
  36. [47]Berglund J Wood hemicelluloses exert distinct biomechanical contributions to cellulose fibrillar networks Nat. Commun. 2020 11 4692 32943624 PMC7499266
  37. [49]Kang X Molecular architecture of fungal cell walls revealed by solid-state NMR Nat. Commun. 2018 9 2747 30013106 PMC6048167
  38. [50]Ehren HL Characterization of the cell wall of a mushroom forming fungus at atomic resolution using solid-state NMR spectroscopy Cell Surface 2020 6 100046 PMC7649524 33204900
  39. [51]Chrissian C Solid-state NMR spectroscopy identifies three classes of lipids in Cryptococcus neoformans melanized cell walls and whole fungal cells J. Biol. Chem. 2020 295 15083 15096 32859751 PMC7606693
  40. [52]Martin RW Kelly JE Kelz JI Advances in instrumentation and methodology for solid-state NMR of biological assemblies J. Struct. Biol. 2019 206 73 89 30205196 PMC6408314
  41. [53]Bougault C Ayala I Vollmer W Simorre JP Schanda P Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency J. Struct. Biol. 2019 206 66 72 30031884 PMC6252081
  42. [54]Mao H Designing hierarchical nanoporous membranes for highly efficient gas adsorption and storage Sci. Adv. 2020 6 eabb0694 33028517 PMC7541071
  43. [55]Thongsomboon W Phosphoethanolamine cellulose: a naturally produced chemically modified cellulose Science 2018 359 334 338 29348238
  44. [56]Chakraborty A A molecular vision of fungal cell wall organization by functional genomics and solid-state NMR Nat. Commun. 2021 12 6346 34732740 PMC8566572
  45. [57]Poulhazan A Identification and quantification of glycans in whole cells: architecture of microalgal polysaccharides described by solid-state nuclear magnetic resonance J. Am. Chem. Soc. 2021 143 19374 19388 34735142 PMC8630702
  46. [58]Ghassemi, N. et al. Solid-state NMR investigations of extracellular matrixes and cell walls of algae, bacteria, fungi, and plants. Chem. Rev. 10.1021/acs.chemrev.1c00669 (2022). PMC9486976 34878762 · DOI
  47. [61]Williams JK Schmidt-Rohr K Hong M Aromatic spectral editing techniques for magic-angle-spinning solid-state NMR spectroscopy of uniformly 13C-labeled proteins Solid State Nucl. Magn. Reson. 2015 72 118 126 26440131 PMC4674322
  48. [62]Schmidt-Rohr K Fritzsching KJ Liao SY Hong M Spectral editing of two-dimensional magic-angle-spinning solid-state NMR spectra for protein resonance assignment and structure determination J. Biomol. NMR 2012 54 343 353 23053913 PMC3656487
  49. [63]Kang X CCMRD: A solid-state NMR database for complex carbohydrates J. Biomol. NMR 2020 74 239 245 32125579
  50. [64]White PB Wang T Park YB Cosgrove DJ Hong M Water-polysaccharide interactions in the primary cell wall of Arabidopsis thaliana from polarization transfer solid-state NMR J. Am. Chem. Soc. 2014 136 10399 10409 24984197
  51. [65]Ader C Structural rearrangements of membrane proteins probed by water-edited solid-state NMR spectroscopy J. Am. Chem. Soc. 2009 131 170 176 19063626
  52. [69]Yelle DJ Ralph J Frihart C Characterization of nonderivatized plant cell walls using high-resolution solution-state NMR spectroscopy Magn. Reson. Chem. 2008 46 508 517 18383438 PMC5826555
  53. [70]Mansfield SD Kim H Lu FC Ralph J Whole plant cell wall characterization using solution-state 2D NMR Nat. Protoc. 2012 7 1579 1589 22864199
  54. [71]Grabber JH Ralph J Hatfield RD Model studies of ferulate-coniferyl alcohol cross-product formation in primary maize walls: implications for lignification in grasses J. Agric. Food Chem. 2002 50 6008 6016 12358473
  55. [72]Grabber JH Ralph J Hatfield RD Cross-linking of maize walls by ferulate dimerization and incorporation into lignin J. Agric. Food Chem. 2000 48 6106 6113 11312783
  56. [73]Yuan T-Q Sun S-N Xu F Sun R-C Characterization of lignin structures and lignin–carbohydrate complex (LCC) linkages by quantitative 13C and 2D HSQC NMR spectroscopy J. Agric. Food Chem. 2011 59 10604 10614 21879769
  57. [74]Sauvee C Highly efficient, water-soluble polarizing agents for dynamic nuclear polarization at high frequency Angew. Chem. Int. Ed. 2013 52 10858 10861 23956072
  58. [75]Takahashi H Rapid natural-abundance 2D 13C-13C correlation spectroscopy using dynamic nuclear polarization enhanced solid-state NMR and matrix-free sample preparation Angew. Chem. Int. Ed. 2012 51 11766 11769 23081784
  59. [76]Perras FA Atomic-level structure characterization of biomass pre- and post-lignin treatment by dynamic nuclear polarization-enhanced solid-state NMR J. Phys. Chem. A 2017 121 623 630 28026949
  60. [78]Zhao W Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment Biotechnol. Biofuels 2021 14 14 33413580 PMC7792314
  61. [79]Szabo L Structure of a family 15 carbohydrate-binding module in complex with xylopentaose. Evidence that xylan binds in an approximate 3-fold helical conformation J. Biol. Chem 2001 276 49061 49065 11598143
  62. [83]Raju RK Ramraj A Hillier IH Vicent MA Burton NA Carbohydrate–aromatic π interactions: a test of density functionals and the DFT-D method Phys. Chem. Chem. Phys. 2009 11 3411 3416 19421542
  63. [84]Yang H Zimmer J Yingling YG Kubicki JD How cellulose elongates—a QM/MM study of the molecular mechanism of cellulose polymerization in bacterial CESA J. Phys. Chem. B 2015 119 6525 6535 25942604
  64. [86]Wen JL Sun SL Yuan TQ Xu F Sun RC Structural elucidation of lignin polymers of Eucalyptus chips during organosolv pretreatment and extended delignification J. Agric. Food Chem. 2013 61 11067 11075 24168231

Authors
Kirui, A., Zhao, W., Deligey, F., Yang, H., Kang, X., Mentink-Vigier, F., & Wang, T.
Affiliations
  • Louisiana State University (US)
  • Pennsylvania State University (US)
  • Ningbo University (CN)
Corresponding author
Wang, Tuo
Venue
Nature Communications
Published
2022-01-27
Volume
13
Issue
1
Pages
538-538
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4210301269
Cited by
290
References
85
Citations by year
2026: 84 · 2025: 80 · 2024: 60 · 2023: 48 · 2022: 18
FWCI
14.75
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
Funders
U.S. Department of Energy (DE-SC0021210, DE-SC0001090)
Topics
  • Physical Sciences › Engineering › Biomedical Engineering › Lignin and Wood Chemistry
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Polysaccharides and Plant Cell Walls
  • Physical Sciences › Engineering › Biomedical Engineering › Biofuel production and bioconversion
Keywords
lignocellulosic biomass, plant cell wall, lignin, xylan, cellulose, non-covalent interactions, plant stems, Poaceae, hardwood, softwood, lignocellulose recalcitrance, enzymatic hydrolysis, water retention
MeSH terms
Biopolymers, Cell Wall, Cellulose, Poaceae, Hydrolysis, Lignin, Magnetic Resonance Spectroscopy, Plants, Polysaccharides, Xylans, Biomass

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