A Nuclear Phosphoinositide Kinase Complex Regulates P53
Open accessAbstract
The tumour suppressor p53 (encoded by TP53) protects the genome against cellular stress and is frequently mutated in cancer. Mutant p53 acquires gain-of-function oncogenic activities that are dependent on its enhanced stability. However, the mechanisms by which nuclear p53 is stabilized are poorly understood. Here, we demonstrate that the stability of stress-induced wild-type and mutant p53 is regulated by the type I phosphatidylinositol phosphate kinase (PIPKI-α (also known as PIP5K1A)) and its product phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P 2). Nuclear PIPKI-α binds to p53 upon stress, resulting in the production and association of PtdIns(4,5)P 2 with p53. PtdIns(4,5)P 2 binding promotes the interaction between p53 and the small heat shock proteins HSP27 (also known as HSPB1) and αB-crystallin (also known as HSPB5), which stabilize nuclear p53. Moreover, inhibition of PIPKI-α or PtdIns(4,5)P 2 association results in p53 destabilization. Our results point to a previously unrecognized role of nuclear phosphoinositide signalling in regulating p53 stability and implicate this pathway as a promising therapeutic target in cancer.
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Under genotoxic stress, IPMK-generated nuclear PIP3 binds to p53, which activates nuclear AKT signaling and suppresses apoptosis.
“While years of research have primarily investigated AKT signaling at the cell membrane, recent works by Chen et al. [71] and Choi et al. [61] have revealed that, under genotoxic stress, IPMK-generated nuclear PIP3 binds to p53, which activates nuclear AKT signaling and suppresses apoptosis.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [61]
The Discussion describes a different mechanism under genotoxic stress: PIPKIα generates PI4,5P2, which binds p53 and recruits small heat shock proteins that stabilize it. The Results likewise identify nuclear PI4,5P2—not IPMK-generated PIP3—as the lipid associated with p53. The cited paper does not describe this interaction as activating nuclear AKT signaling or suppressing apoptosis. Page numbers are unavailable in our copy. (LLM, conf=0.88)
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Experimental — accuracy not yet measuredIPMK loss does not affect RAD51 transcription, but impairs the mRNA's cytoplasmic export and translation, reducing RAD51 protein production.
“While IPMK loss does not affect RAD51 transcription, it impairs the mRNA’s cytoplasmic export and translation, ultimately reducing RAD51 protein production.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [61]
The Results section on PIPKIα and p53 stability reports that PIPKIα deletion reduced mutant p53 protein while leaving p53 mRNA levels unaffected; no page number is available in our copy. Searches for IPMK, RAD51, mRNA export, and translation found no passage addressing the claimed RAD51 mechanism. (LLM, conf=0.76)
Experimental — accuracy not yet measuredPIP3 recognizes a specific sequence in RAD51 transcripts, facilitating their nuclear export through the ALY factor.
“PIP3 recognizes a specific sequence in RAD51 transcripts, facilitating their nuclear export through the ALY factor.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [61]
The Results section on p53 association with PI4,5P2 describes lipid binding to p53, not recognition of a sequence in RAD51 transcripts. Searches for RAD51, ALY, and transcript export found no passage in our copy addressing the claimed mechanism. (LLM, conf=0.75)
Experimental — accuracy not yet measuredIPMK-generated PIP3 in mammalian cells regulates nuclear export of RAD51 mRNA.
“A separate investigation by Wickramasinge et al. [61] discovered that IPMK-generated PIP3 in mammalian cells plays a crucial role in regulating the nuclear export of RAD51 mRNA, a key protein in DNA repair.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [61]
The Results section on PIPKIα and the Discussion describe PIPKIα-generated PI4,5P2 regulating nuclear p53 stability, not IPMK-generated PIP3 regulating mRNA export. Searches for RAD51 mRNA, IPMK, and Wickramasinghe found no passage in our copy addressing the attributed finding. Page numbers were not available. (LLM, conf=0.76)
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Cites
Kruse, J.-P., & Gu, W. (2009) · Cell · doi:10.1016/j.cell.2009.04.050 · Cited by 1,610 · see citing works
P53 in survival, death and metabolic health: a lifeguard with a licence to kill.
Kruiswijk, F., Labuschagne, C. F., & Vousden, K. H. (2015) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm4007 · Cited by 1,080 · see citing works
Brooks, C. L., & Gu, W. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.05.022 · Cited by 186 · see citing works
Stress-mediated nuclear stabilization of p53 is regulated by ubiquitination and importin-α3 binding
Marchenko, N. D., Hanel, W., Li, D., Becker, K., Reich, N., & Moll, U. M. (2010) · Cell Death & Differentiation · doi:10.1038/cdd.2009.173 · Cited by 123 · see citing works
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Research works printed but not linked: 63
- [1]Balla T Phosphoinositides: tiny lipids with giant impact on cell regulation. Physiol Rev 93, 1019– 1137 (2013). 23899561 PMC3962547
- [2]Choi S, Thapa N, Tan X, Hedman AC & Anderson RA PIP kinases define PI4,5P(2)signaling specificity by association with effectors. Biochimica et biophysica acta 1851, 711– 723 (2015). 25617736 PMC4380618
- [3]Anderson RA, Boronenkov IV, Doughman SD, Kunz J & Loijens JC Phosphatidylinositol phosphate kinases, a multifaceted family of signaling enzymes. J Biol Chem 274, 9907– 9910 (1999). 10187762
- [4]Golebiewska U, Nyako M, Woturski W, Zaitseva I & McLaughlin S Diffusion coefficient of fluorescent phosphatidylinositol 4,5-bisphosphate in the plasma membrane of cells. Mol Biol Cell 19, 1663– 1669 (2008). 18256277 PMC2291420
- [5]Barlow CA, Laishram RS & Anderson RA Nuclear phosphoinositides: a signaling enigma wrapped in a compartmental conundrum. Trends Cell Biol 20, 25– 35 (2010). 19846310 PMC2818233
- [6]Mellman DL A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs. Nature 451, 1013– 1017 (2008). 18288197
- [7]Boronenkov IV, Loijens JC, Umeda M & Anderson RA Phosphoinositide signaling pathways in nuclei are associated with nuclear speckles containing premRNA processing factors. Mol Biol Cell 9, 3547– 3560 (1998). 9843587 PMC25675
- [8]Dai C & Gu W p53 post-translational modification: deregulated in tumorigenesis. Trends Mol Med 16, 528– 536 (2010). 20932800 PMC2978905
- [9]Bieging KT, Mello SS & Attardi LD Unravelling mechanisms of p53-mediated tumour suppression. Nat Rev Cancer 14, 359– 370 (2014). 24739573 PMC4049238
- [11]Freed-Pastor WA & Prives C Mutant p53: one name, many proteins. Genes Dev 26, 1268– 1286 (2012). 22713868 PMC3387655
- [12]Muller PA & Vousden KH Mutant p53 in cancer: new functions and therapeutic opportunities. Cancer Cell 25, 304– 317 (2014). 24651012 PMC3970583
- [13]Barlow CA, Laishram RS & Anderson RA Nuclear phosphoinositides: a signaling enigma wrapped in a compartmental conundrum. Trends Cell Biol 2010, 25– 35 (2010). PMC2818233 19846310
- [14]Emerling BM Depletion of a putatively druggable class of phosphatidylinositol kinases inhibits growth of p53-null tumors. Cell 155, 844– 857 (2013). 24209622 PMC4070383
- [15]Semenas J The role of PI3K/AKT-related PIP5K1alpha and the discovery of its selective inhibitor for treatment of advanced prostate cancer. Proc Natl Acad Sci U S A 111, E3689– 3698 (2014). 25071204 PMC4156761
- [16]Wiech M Molecular mechanism of mutant p53 stabilization: the role of HSP70 and MDM2. PLoS One 7, e51426 (2012). 23251530 PMC3520893
- [17]Muller PA & Vousden KH p53 mutations in cancer. Nat Cell Biol 15, 2– 8 (2013). 23263379
- [18]Vakifahmetoglu-Norberg H Chaperone-mediated autophagy degrades mutant p53. Genes Dev 27, 1718– 1730 (2013). 23913924 PMC3744729
- [19]Liu J Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13. Cell 147, 223– 234 (2011). 21962518 PMC3441147
- [22]Heck JN A conspicuous connection: structure defines function for the phosphatidylinositol-phosphate kinase family. Crit Rev Biochem Mol Biol 42, 15– 39 (2007). 17364683
- [23]Choi S, Houdek X & Anderson RA Phosphoinositide 3-kinase pathways and autophagy require phosphatidylinositol phosphate kinases. Adv Biol Regul (2018). PMC5955796 29472147
- [24]Alexandrova EM Improving survival by exploiting tumour dependence on stabilized mutant p53 for treatment. Nature 523, 352– 356 (2015). 26009011 PMC4506213
- [25]Fredriksson S Protein detection using proximity-dependent DNA ligation assays. Nat Biotechnol 20, 473– 477 (2002). 11981560
- [26]Lam F, Cladiere D, Guillaume C, Wassmann K & Bolte S Super-resolution for everybody: An image processing workflow to obtain high-resolution images with a standard confocal microscope. Methods 115, 17– 27 (2016). 27826080
- [27]Choi S IQGAP1 is a novel phosphatidylinositol 4,5 bisphosphate effector in regulation of directional cell migration. The EMBO journal 32, 2617– 2630 (2013). 23982733 PMC3791370
- [28]Klein DE, Lee A, Frank DW, Marks MS & Lemmon MA The pleckstrin homology domains of dynamin isoforms require oligomerization for high affinity phosphoinositide binding. J Biol Chem 273, 27725– 27733 (1998). 9765310
- [29]Rohacs T, Chen J, Prestwich GD & Logothetis DE Distinct specificities of inwardly rectifying K(+) channels for phosphoinositides. J Biol Chem 274, 36065– 36072 (1999). 10593888
- [30]Balla T & Varnai P Visualization of cellular phosphoinositide pools with GFP-fused protein-domains. Curr Protoc Cell Biol Chapter 24, Unit 24 24 (2009). PMC3125592 19283730
- [31]Varnai P & Balla T Visualization of phosphoinositides that bind pleckstrin homology domains: calcium- and agonist-induced dynamic changes and relationship to myo-[3H]inositol-labeled phosphoinositide pools. J Cell Biol 143, 501– 510 (1998). 9786958 PMC2132833
- [32]Lewis AE Identification of nuclear phosphatidylinositol 4,5-bisphosphate-interacting proteins by neomycin extraction. Mol Cell Proteomics 10, M110 003376 (2011). PMC3033679 21048195
- [33]Chatterjee A U-box-type ubiquitin E4 ligase, UFD2a attenuates cisplatin mediated degradation of DeltaNp63alpha. Cell Cycle 7, 1231– 1237 (2008). 18418053 PMC3073353
- [34]Murphy LO, Smith S, Chen RH, Fingar DC & Blenis J Molecular interpretation of ERK signal duration by immediate early gene products. Nat Cell Biol 4, 556– 564 (2002). 12134156
- [35]Fukami K Antibody to phosphatidylinositol 4,5-bisphosphate inhibits oncogene-induced mitogenesis. Proc Natl Acad Sci U S A 85, 9057– 9061 (1988). 2848254 PMC282662
- [36]Wang YH DNA damage causes rapid accumulation of phosphoinositides for ATR signaling. Nat Commun 8, 2118 (2017). 29242514 PMC5730617
- [37]Shah ZH Nuclear phosphoinositides and their impact on nuclear functions. FEBS J 280, 6295– 6310 (2013). 24112514
- [38]Xu Q Phosphatidylinositol phosphate kinase PIPKIgamma and phosphatase INPP5E coordinate initiation of ciliogenesis. Nat Commun 7, 10777 (2016). 26916822 PMC4773430
- [39]Humbert MC ARL13B, PDE6D, and CEP164 form a functional network for INPP5E ciliary targeting. Proc Natl Acad Sci U S A 109, 19691– 19696 (2012). 23150559 PMC3511769
- [40]Balla T & Varnai P Visualizing cellular phosphoinositide pools with GFP-fused protein-modules. Sci STKE 2002, pl3 (2002). 11917154
- [41]Choi S Agonist-stimulated phosphatidylinositol-3,4,5-trisphosphate generation by scaffolded phosphoinositide kinases. Nat Cell Biol 18, 1324– 1335 (2016). 27870828 PMC5679705
- [42]Xu J Gain of function of mutant p53 by coaggregation with multiple tumor suppressors. Nat Chem Biol 7, 285– 295 (2011). 21445056
- [43]Peng Y, Chen L, Li C, Lu W & Chen J Inhibition of MDM2 by hsp90 contributes to mutant p53 stabilization. J Biol Chem 276, 40583– 40590 (2001). 11507088
- [44]Li D Functional inactivation of endogenous MDM2 and CHIP by HSP90 causes aberrant stabilization of mutant p53 in human cancer cells. Mol Cancer Res 9, 577– 588 (2011). 21478269 PMC3097033
- [45]Arrigo AP Hsp27 (HspB1) and alphaB-crystallin (HspB5) as therapeutic targets. FEBS Lett 581, 3665– 3674 (2007). 17467701
- [46]Venkatakrishnan CD HSP27 regulates p53 transcriptional activity in doxorubicin-treated fibroblasts and cardiac H9c2 cells: p21 upregulation and G2/M phase cell cycle arrest. Am J Physiol Heart Circ Physiol 294, H1736– 1744 (2008). 18263706
- [47]Adhikari AS, Sridhar Rao K, Rangaraj N, Parnaik VK & Mohan Rao C Heat stress-induced localization of small heat shock proteins in mouse myoblasts: intranuclear lamin A/C speckles as target for alphaB-crystallin and Hsp25. Exp Cell Res 299, 393– 403 (2004). 15350538
- [48]Watanabe G alphaB-crystallin: a novel p53-target gene required for p53-dependent apoptosis. Cancer Sci 100, 2368– 2375 (2009). 19799611 PMC11159724
- [49]Moyano JV AlphaB-crystallin is a novel oncoprotein that predicts poor clinical outcome in breast cancer. J Clin Invest 116, 261– 270 (2006). 16395408 PMC1323258
- [50]Koletsa T alphaB-crystallin is a marker of aggressive breast cancer behavior but does not independently predict for patient outcome: a combined analysis of two randomized studies. BMC Clin Pathol 14, 28 (2014). 24987308 PMC4077639
- [51]Hanahan D & Weinberg RA Hallmarks of cancer: the next generation. Cell 144, 646– 674 (2011). 21376230
- [53]Passinen S, Valkila J, Manninen T, Syvala H & Ylikomi T The C-terminal half of Hsp90 is responsible for its cytoplasmic localization. Eur J Biochem 268, 5337– 5342 (2001). 11606196
- [54]Friedler A, Veprintsev DB, Freund SM, von Glos KI & Fersht AR Modulation of binding of DNA to the C-terminal domain of p53 by acetylation. Structure 13, 629– 636 (2005). 15837201
- [55]Laptenko O The p53 C terminus controls site-specific DNA binding and promotes structural changes within the central DNA binding domain. Mol Cell 57, 1034– 1046 (2015). 25794615 PMC6221458
- [56]Cino EA, Soares IN, Pedrote MM, de Oliveira GA & Silva JL Aggregation tendencies in the p53 family are modulated by backbone hydrogen bonds. Sci Rep 6, 32535 (2016). 27600721 PMC5013286
- [57]Ano Bom AP Mutant p53 aggregates into prion-like amyloid oligomers and fibrils: implications for cancer. J Biol Chem 287, 28152– 28162 (2012). 22715097 PMC3431633
- [58]Malin D, Petrovic V, Strekalova E, Sharma B & Cryns VL alphaB-crystallin: Portrait of a malignant chaperone as a cancer therapeutic target. Pharmacol Ther 160, 1– 10 (2016). 26820756 PMC5015648
- [59]Bakthisaran R, Tangirala R & Rao Ch M Small heat shock proteins: Role in cellular functions and pathology. Biochimica et biophysica acta 1854, 291– 319 (2015). 25556000
- [60]Arrigo AP & Gibert B HspB1, HspB5 and HspB4 in Human Cancers: Potent Oncogenic Role of Some of Their Client Proteins. Cancers (Basel) 6, 333– 365 (2014). 24514166 PMC3980596
- [61]van den IP, Wheelock R, Prescott A, Russell P & Quinlan RA Nuclear speckle localisation of the small heat shock protein alpha B-crystallin and its inhibition by the R120G cardiomyopathy-linked mutation. Exp Cell Res 287, 249– 261 (2003). 12837281
- [62]Sottile ML & Nadin SB Heat shock proteins and DNA repair mechanisms: an updated overview. Cell Stress Chaperones 23, 303– 315 (2018). 28952019 PMC5904076
- [63]Naguib A p53 mutations change phosphatidylinositol acyl chain composition. Cell Rep 10, 8– 19 (2015). 25543136 PMC4287966
- [64]Shulga YV, Anderson RA, Topham MK & Epand RM Phosphatidylinositol-4-phosphate 5-kinase isoforms exhibit acyl chain selectivity for both substrate and lipid activator. J Biol Chem 287, 35953– 35963 (2012). 22942276 PMC3476263
- [65]Waugh MG Amplification of Chromosome 1q Genes Encoding the Phosphoinositide Signalling Enzymes PI4KB, AKT3, PIP5K1A and PI3KC2B in Breast Cancer. J Cancer 5, 790– 796 (2014). 25368680 PMC4216804
- [66]Prudovsky I, Vary CP, Markaki Y, Olins AL & Olins DE Phosphatidylserine colocalizes with epichromatin in interphase nuclei and mitotic chromosomes. Nucleus 3, 200– 210 (2012). 22555604 PMC3383575
- [67]Sharma A, Singh K & Almasan A Histone H2AX phosphorylation: a marker for DNA damage. Methods Mol Biol 920, 613– 626 (2012). 22941631
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A P53-Phosphoinositide Signalosome Regulates Nuclear AKT Activation
Chen, M., Choi, S., Wen, T., Chen, C., Thapa, N., Lee, J. H., Cryns, V. L., & Anderson, R. A. (2022) · Nature Cell Biology · doi:10.1038/s41556-022-00949-1 · Cited by 117 · see citing works
Self-citationFrom Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease
Mishra, S. H., Chatterjee, S., Viera-Preval, L., & Guha, P. (2025) · Biomolecules · doi:10.3390/biom15091266 · Cited by 1 · see citing works
“A separate investigation by Wickramasinge et al. [61] discovered that IPMK-generated PIP3 in mammalian cells plays a crucial role in regulating the nuclear export of RAD51 mRNA, a key protein in DNA repair.”
Influential
- Authors
- Choi, S., Chen, M., Cryns, V. L., & Anderson, R. A.
- Affiliations
- University of Wisconsin–Madison (US)
- Corresponding author
- Anderson, Richard A.
- Venue
- Nature Cell Biology
- Published
- 2019-03-18
- Volume
- 21
- Issue
- 4
- Pages
- 462-475
- ISSN
- 1465-7392 (ISSN-L)
- 1476-4679
- PMC
- PMC7017954
- OpenAlex
- W2921628574
- Cited by
- 106
- References
- 4
- Citations by year
- 2026: 10 · 2025: 25 · 2024: 13 · 2023: 6 · 2022: 14 · 2021: 14 · 2020: 12 · 2019: 12
- FWCI
- 5.54
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Cell Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Cancer Research Institute
- Moffitt Cancer Center
- National Institutes of Health
- National Institute of General Medical Sciences (R01GM114386, R35GM134955)
- Topics
- Health Sciences › Medicine › Oncology › Cancer-related Molecular Pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- p53, phosphatidylinositol 4,5-bisphosphate, phosphoinositide signaling, p53 stabilization, mutant p53, HSP27, alphaB-crystallin, small heat shock proteins, tumour suppressor, stress response, cancer therapy targets
- MeSH terms
- Cell Line, Cell Nucleus, Humans, Tumor Suppressor Protein p53, Phosphotransferases (Alcohol Group Acceptor), Phosphatidylinositol 4,5-Diphosphate, Heat-Shock Proteins, Small, Protein Stability
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