Mutant clones in normal epithelium outcompete and eliminate emerging tumours
Open accessPublished version of a preprint
Abstract
Human epithelial tissues accumulate cancer-driver mutations with age 1-9, yet tumour formation remains rare. The positive selection of these mutations suggests that they alter the behaviour and fitness of proliferating cells 10-12. Thus, normal adult tissues become a patchwork of mutant clones competing for space and survival, with the fittest clones expanding by eliminating their less competitive neighbours 11-14. However, little is known about how such dynamic competition in normal epithelia influences early tumorigenesis. Here we show that the majority of newly formed oesophageal tumours are eliminated through competition with mutant clones in the adjacent normal epithelium. We followed the fate of nascent, microscopic, pre-malignant tumours in a mouse model of oesophageal carcinogenesis and found that most were rapidly lost with no indication of tumour cell death, decreased proliferation or an anti-tumour immune response. However, deep sequencing of ten-day-old and one-year-old tumours showed evidence of selection on the surviving neoplasms. Induction of highly competitive clones in transgenic mice increased early tumour removal, whereas pharmacological inhibition of clonal competition reduced tumour loss. These results support a model in which survival of early neoplasms depends on their competitive fitness relative to that of mutant clones in the surrounding normal tissue. Mutant clones in normal epithelium have an unexpected anti-tumorigenic role in purging early tumours through cell competition, thereby preserving tissue integrity.
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In the esophagus, clonally expanding epithelial cells restrict tumorigenesis by outcompeting emerging cancer cells.
“In the esophagus, clonally expanding epithelial cells restrict tumorigenesis by outcompeting emerging cancer cells (29, 30).”
From Somatic mutations in TBX3 promote hepatic clonal expansion by accelerating VLDL secretion (2025) · cites this paper as [30]
The Abstract and ‘Epithelial mutant clones displace tumors’ section report that expanding mutant clones in normal mouse esophageal epithelium eliminate early tumors through competition. The claim omits the mouse-model qualification and calls the emerging, pre-malignant tumor cells ‘cancer cells’; the Discussion says whether the mechanism occurs in humans is unknown. (LLM, conf=0.84)
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References 57 · Cited by 192
Research works printed but not linked: 42
- [1]Lee-Six H The landscape of somatic mutation in normal colorectal epithelial cells Nature 2019 574 532 537 31645730
- [2]Martincorena I Somatic mutant clones colonize the human esophagus with age Science 2018 362 911 917 30337457 PMC6298579
- [3]Martincorena I Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin Science 2015 348 880 886 25999502 PMC4471149
- [7]Yoshida K Tobacco smoking and somatic mutations in human bronchial epithelium Nature 2020 578 266 272 31996850 PMC7021511
- [8]Fowler JC Selection of Oncogenic Mutant Clones in Normal Human Skin Varies with Body Site Cancer Discov 2021 11 340 361 33087317 PMC7116717
- [10]Vermeulen L Defining stem cell dynamics in models of intestinal tumor initiation Science 2013 342 995 998 24264992
- [11]Alcolea MP Differentiation imbalance in single oesophageal progenitor cells causes clonal immortalization and field change Nat Cell Biol 2014 16 615 622 24814514 PMC4085550
- [12]Fernandez-Antoran D Outcompeting p53-Mutant Cells in the Normal Esophagus by Redox Manipulation Cell stem cell 2019 25 329 341 31327664 PMC6739485
- [13]Colom B Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium Nature genetics 2020 52 604 614 32424351 PMC7116672
- [14]Murai K Epidermal Tissue Adapts to Restrain Progenitors Carrying Clonal p53 Mutations Cell stem cell 2018 23 687 699 e688 30269904 PMC6224607
- [15]Doupe DP A single progenitor population switches behavior to maintain and repair esophageal epithelium Science 2012 337 1091 1093 22821983 PMC3527005
- [16]Piedrafita G A single-progenitor model as the unifying paradigm of epidermal and esophageal epithelial maintenance in mice Nat Commun 2020 11 1429 32188860 PMC7080751
- [17]Frede J Greulich P Nagy T Simons BD Jones PH A single dividing cell population with imbalanced fate drives oesophageal tumour growth Nat Cell Biol 2016 18 967 978 27548914 PMC5870829
- [18]Nair RR A role for keratin 17 during DNA damage response and tumor initiation Proceedings of the National Academy of Sciences 2021 118 e2020150118 PMC8020757 33762306
- [19]Hobbs RP Keratin-dependent regulation of Aire and gene expression in skin tumor keratinocytes Nat Genet 2015 47 933 938 26168014 PMC4520766
- [20]Liu Z Keratin 17 activates AKT signalling and induces epithelial-mesenchymal transition in oesophageal squamous cell carcinoma Journal of Proteomics 2020 211 103557 31669361
- [22]Rubio CA Liu FS Chejfec G Sveander M The induction of esophageal tumors in mice: dose and time dependency In Vivo 1987 1 35 38 2979761
- [23]McGranahan N Swanton C Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future Cell 2017 168 613 628 28187284
- [25]Hall MWJ Jones PH Hall BA Relating evolutionary selection and mutant clonal dynamics in normal epithelia Journal of the Royal Society Interface 2019 16 20190230 PMC6685019 31362624
- [26]Martincorena I Universal Patterns of Selection in Cancer and Somatic Tissues Cell 2017 171 1029 1041 e1021 29056346 PMC5720395
- [27]Martincorena I Jones PH Campbell PJ Constrained positive selection on cancer mutations in normal skin Proceedings of the National Academy of Sciences 2016 113 E1128 E1129 PMC4780655 26884187
- [28]Prasad V Haploinsufficiency of Atp2a2, Encoding the Sarco(endo)plasmic Reticulum Ca2+-ATPase Isoform 2 Ca2+ Pump, Predisposes Mice to Squamous Cell Tumors via a Novel Mode of Cancer Susceptibility Cancer Research 2005 65 8655 8661 16204033
- [29]Liu LH Boivin GP Prasad V Periasamy M Shull GE Squamous Cell Tumors in Mice Heterozygous for a Null Allele of Atp2a2, Encoding the Sarco(endo)plasmic Reticulum Ca2+-ATPase Isoform 2 Ca2+Pump Journal of Biological Chemistry 2001 276 26737 26740 11389134
- [30]Tumbar T Defining the epithelial stem cell niche in skin Science 2004 303 359 363 14671312 PMC2405920
- [31]Brown S Correction of aberrant growth preserves tissue homeostasis Nature 2017 548 334 337 28783732 PMC5675114
- [32]Kon S Cell competition with normal epithelial cells promotes apical extrusion of transformed cells through metabolic changes Nature Cell Biology 2017 19 530 28414314
- [33]Shultz LD Human lymphoid and myeloid cell development in NOD/LtSz-scid IL2R gamma null mice engrafted with mobilized human hemopoietic stem cells Journal of immunology (Baltimore, Md.: 1950) 2005 174 6477 6489 15879151
- [34]Ellis P Reliable detection of somatic mutations in solid tissues by laser-capture microdissection and low-input DNA sequencing Nature Protocols 2021 16 841 871 33318691
- [35]Li H Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM ArXiv 2013 1303.3997
- [36]Gerstung M Papaemmanuil E Campbell PJ Subclonal variant calling with multiple samples and prior knowledge Bioinformatics 2014 30 1198 1204 24443148 PMC3998123
- [37]Alexandrov LB The repertoire of mutational signatures in human cancer Nature 2020 578 94 101 32025018 PMC7054213
- [38]Rosenthal R McGranahan N Herrero J Taylor BS Swanton C DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution Genome biology 2016 17 31 26899170 PMC4762164
- [39]Jones D cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data Current Protocols in Bioinformatics 2016 56 15.10.11 15.10.18 PMC6097605 27930805
- [40]Menzies A VAGrENT: Variation Annotation Generator Current Protocols in Bioinformatics 2015 52 15.18.11 PMC6101192 26678383
- [41]Scheinin I DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome research 2014 24 2022 2032 25236618 PMC4248318
- [42]Kuilman T CopywriteR: DNA copy number detection from off-target sequence data Genome biology 2015 16 49 25887352 PMC4396974
- [43]Nik-Zainal S Mutational processes molding the genomes of 21 breast cancers Cell 2012 149 979 993 22608084 PMC3414841
- [45]Klinger E Rickert D Hasenauer J pyABC: distributed, likelihood-free inference Bioinformatics 2018 34 3591 3593 29762723
- [46]Consortium, T. Integrated genomic characterization of oesophageal carcinoma Nature 2017 541 169 175 28052061 PMC5651175
- [47]Klein AM Brash DE Jones PH Simons BD Stochastic fate of p53-mutant epidermal progenitor cells is tilted toward proliferation by UV B during preneoplasia Proceedings of the National Academy of Sciences 2010 107 270 275 PMC2806764 20018764
- [49]Kendall DG On the Generalized "Birth-and-Death" Process The Annals of Mathematical Statistics 1948 19 1 15 15
- [50]Orr HA THE POPULATION GENETICS OF ADAPTATION: THE DISTRIBUTION OF FACTORS FIXED DURING ADAPTIVE EVOLUTION Evolution 1998 52 935 949 28565213
- Authors
- Colom, B., Herms, A., Hall, M. W. J., Dentro, S. C., King, C., Sood, R. K., Alcolea, M. P., Piedrafita, G., Fernandez-Antoran, D., Ong, S. H., Fowler, J. C., Mahbubani, K. T., Saeb-Parsy, K., Gerstung, M., Hall, B. A., & Jones, P. H.
- Affiliations
- Wellcome Sanger Institute (GB)
- University of Cambridge (GB)
- European Bioinformatics Institute (GB)
- Wellcome/MRC Cambridge Stem Cell Institute (GB)
- NIHR Cambridge Biomedical Research Centre (GB)
- University College London (GB)
- Corresponding author
- Jones, P. H.
- ORCID
- Venue
- Nature
- Published
- 2021-10-13
- Volume
- 598
- Issue
- 7881
- Pages
- 510-514
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC7612642
- OpenAlex
- W3207879702
- Cited by
- 192
- References
- 57
- Citations by year
- 2026: 24 · 2025: 33 · 2024: 40 · 2023: 42 · 2022: 46 · 2021: 7
- FWCI
- 13.63
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Locations
- Nature (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Apollo (University of Cambridge) (submittedVersion)
- Apollo
- Funders
- Wellcome Trust (296194, 098051)
- European Bioinformatics Institute
- Chan Zuckerberg Initiative
- Cancer Research UK (27326, A27326, A17257, C/609/A17257, 17257, C609/A27326)
- Royal Society (UF130039)
- Russian Science Foundation
- Medical Research Council (098051, MC_UU_00014/5, MR/S000216/1, MC_PC_17230, MR/S000216/2, MC_UU_12022/9)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer Genomics and Diagnostics
- Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- clonal competition, early tumorigenesis, esophageal cancer, mutant clones, cancer driver mutations, cell competition, clonal selection, tissue integrity
- MeSH terms
- Cell Competition, Animals, Cell Survival, Clone Cells, Disease Models, Animal, Epithelial Cells, Epithelium, Esophageal Neoplasms, Female, Male, Mutation, Time Factors, Cell Death, Cell Proliferation, Mice, Carcinogenesis
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