Cited by 111Neurogenesis and neuroplasticity mechanismsDevelopmental Biology and Gene RegulationSingle-cell and spatial transcriptomics

The development and evolution of inhibitory neurons in primate cerebrum

Open access
Schmitz, Matthew T., Sandoval, Kadellyn, Chen, Christopher P., Mostajo-Radji, Mohammed A., Seeley, William W., Nowakowski, Tomasz J., Ye, Chun Jimmie, Paredes, Mercedes F. +1 more·2022·Nature

Abstract

Neuroanatomists have long speculated that expanded primate brains contain an increased morphological diversity of inhibitory neurons (INs) 1 , and recent studies have identified primate-specific neuronal populations at the molecular level 2 . However, we know little about the developmental mechanisms that specify evolutionarily novel cell types in the brain. Here, we reconstruct gene expression trajectories specifying INs generated throughout the neurogenic period in macaques and mice by analysing the transcriptomes of 250,181 cells. We find that the initial classes of INs generated prenatally are largely conserved among mammals. Nonetheless, we identify two contrasting developmental mechanisms for specifying evolutionarily novel cell types during prenatal development. First, we show that recently identified primate-specific TAC3 striatal INs are specified by a unique transcriptional programme in progenitors followed by induction of a distinct suite of neuropeptides and neurotransmitter receptors in new-born neurons. Second, we find that multiple classes of transcriptionally conserved olfactory bulb (OB)-bound precursors are redirected to expanded primate white matter and striatum. These classes include a novel peristriatal class of striatum laureatum neurons that resemble dopaminergic periglomerular cells of the OB. We propose an evolutionary model in which conserved initial classes of neurons supplying the smaller primate OB are reused in the enlarged striatum and cortex. Together, our results provide a unified developmental taxonomy of initial classes of mammalian INs and reveal multiple developmental mechanisms for neural cell type evolution.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41586-022-04510-w

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The LGE PAX6+ interneuron signature resembles mouse olfactory bulb precursors that generate neurons redirected to white matter in primates.

    “Notably, we found a cluster of interneurons expressing MEIS2 and high levels of PAX6 (LGE PAX6+ interneurons), a signature that resembles mouse olfactory bulb precursors that were recently reported to generate neurons redirected to white matter in primates29.”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

The citation lists haven’t been fetched yet

References 62 · Cited by 111

Research works printed but not linked: 40

  1. [4]Hansen DV Non-epithelial stem cells and cortical interneuron production in the human ganglionic eminences Nat. Neurosci. 2013 16 1576 1587 24097039 PMC4191718
  2. [7]Fishell G Kepecs A Interneuron types as attractors and controllers Annu. Rev. Neurosci. 2020 43 1 30 31299170 PMC7064158
  3. [8]Rakic P Neurons in rhesus monkey visual cortex: systematic relation between time of origin and eventual disposition Science 1974 183 425 427 4203022
  4. [9]Zhu Y Spatiotemporal transcriptomic divergence across human and macaque brain development Science 2018 362 eaat8077 30545855 PMC6900982
  5. [11]Loo L Single-cell transcriptomic analysis of mouse neocortical development Nat. Commun. 2019 10 134 30635555 PMC6329831
  6. [13]Wagner DE Klein AM Lineage tracing meets single-cell omics: opportunities and challenges Nat. Rev. Genet 2020 21 410 427 32235876 PMC7307462
  7. [14]Miller JA Common cell type nomenclature for the mammalian brain eLife 2020 9 e59928 33372656 PMC7790494
  8. [15]Lange, M. et al. CellRank for directed single-cell fate mapping. Nat. Methods19, 159–170 (2022). PMC8828480 35027767
  9. [16]Paul A Transcriptional architecture of synaptic communication delineates GABAergic neuron identity Cell 2017 171 522 539 28942923 PMC5772785
  10. [18]Valero M Sleep down state-active ID2/Nkx2.1 interneurons in the neocortex Nat. Neurosci. 2021 24 401 411 33619404 PMC9662703
  11. [19]Kuerbitz J Loss of intercalated cells (ITCs) in the mouse amygdala of Tshz1 mutants correlates with fear, depression, and social interaction phenotypes J. Neurosci. 2018 38 1160 1177 29255003 PMC5792476
  12. [20]Märtin A A spatiomolecular map of the striatum Cell Rep. 2019 29 4320 4333 31875543
  13. [22]Muñoz-Manchado AB Diversity of interneurons in the dorsal striatum revealed by single-cell RNA sequencing and PatchSeq Cell Rep. 2018 24 2179 2190 30134177 PMC6117871
  14. [23]Agoston Z Meis2 is a Pax6 co-factor in neurogenesis and dopaminergic periglomerular fate specification in the adult olfactory bulb Development 2014 141 28 38 24284204
  15. [24]Cave JW Differential regulation of dopaminergic gene expression by Er81 J. Neurosci. 2010 30 4717 4724 20357122 PMC2859884
  16. [25]Kuerbitz J Temporally distinct roles for the zinc finger transcription factor Sp8 in the generation and migration of dorsal lateral ganglionic eminence (dLGE)-derived neuronal subtypes in the mouse Cereb. Cortex 2021 31 1744 1762 33230547 PMC7869092
  17. [26]Luzzati F Glia-independent chains of neuroblasts through the subcortical parenchyma of the adult rabbit brain Proc. Natl Acad. Sci 2003 100 13036 13041 14559968 PMC240740
  18. [29]Dubach M Primate neostriatal neurons containing tyrosine hydroxylase: immunohistochemical evidence Neurosci. Lett. 1987 75 205 210 2883616
  19. [30]Arendt D The origin and evolution of cell types Nat. Rev. Genet. 2016 17 744 757 27818507
  20. [31]Paredes MF Sorrells SF Garcia-Verdugo JM Alvarez-Buylla A Brain size and limits to adult neurogenesis J. Comp. Neurol. 2016 524 646 664 26417888 PMC5047485
  21. [32]Zhang K Sejnowski TJ A universal scaling law between gray matter and white matter of cerebral cortex Proc. Natl Acad. Sci. USA 2000 97 5621 5626 10792049 PMC25878
  22. [34]Lledo P-M Alonso M Grubb MS Adult neurogenesis and functional plasticity in neuronal circuits Nat. Rev. Neurosci. 2006 7 179 193 16495940
  23. [35]Miller DJ Prolonged myelination in human neocortical evolution Proc. Natl Acad. Sci. US.A 2012 109 16480 16485 PMC3478650 23012402
  24. [36]Duchatel RJ Shannon Weickert C Tooney PA White matter neuron biology and neuropathology in schizophrenia NPJ Schizophr. 2019 5 10 31285426 PMC6614474
  25. [37]Diederich NJ Surmeier DJ Uchihara T Grillner S Goetz CG Parkinson’s disease: is it a consequence of human brain evolution? Movement Disord. 2019 34 453 459 30759321 PMC6593760
  26. [38]Sousa AMM Molecular and cellular reorganization of neural circuits in the human lineage Science 2017 358 1027 1032 29170230 PMC5776074
  27. [39]Betarbet R Dopaminergic neurons intrinsic to the primate striatum J. Neurosci. 1997 17 6761 6768 9254687 PMC6573124
  28. [40]Björklund A Dunnett SB Dopamine neuron systems in the brain: an update Trends Neurosci. 2007 30 194 202 17408759
  29. [41]Crick FC Koch C What is the function of the claustrum? Philos. Trans. R. Soc. B Biol. Sci. 2005 360 1271 1279 PMC1569501 16147522
  30. [43]La Manno G Molecular architecture of the developing mouse brain Nature 2020 596 92 96 34321664
  31. [45]Anderson AG Kulkarni A Harper M Konopka G Single-cell analysis of Foxp1-driven mechanisms essential for striatal development Cell Rep. 2020 30 3051 3066.e7 32130906 PMC7137930
  32. [46]McGinnis CS MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices Nat. Methods 2019 16 619 626 31209384 PMC6837808
  33. [48]Fiddes IT Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation Genome Res. 2018 28 1029 1038 29884752 PMC6028123
  34. [50]Polański K BBKNN: fast batch alignment of single cell transcriptomes Bioinformatics 2020 36 964 965 31400197 PMC9883685
  35. [51]Bielle F Multiple origins of Cajal–Retzius cells at the borders of the developing pallium Nat. Neurosci. 2005 8 1002 1012 16041369
  36. [54]Sun, Y., Ip, P. & Chakrabartty, A. Simple elimination of background fluorescence in formalin-fixed human brain tissue for immunofluorescence microscopy. J. Vis. Exp. 10.3791/56188(2017). PMC5614400 28892031 · DOI
  37. [56]Stenman J Toresson H Campbell K Identification of two distinct progenitor populations in the lateral ganglionic eminence: implications for striatal and olfactory bulb neurogenesis J. Neurosci. 2003 23 167 174 12514213 PMC6742158
  38. [57]Speir ML UCSC Cell Browser: visualize your single-cell data Bioinformatics 2021 37 4578 4580 PMC8652023 34244710
  39. [58]Kanton S Organoid single-cell genomic atlas uncovers human-specific features of brain development Nature 2019 574 418 422 31619793
  40. [59]Alzu’bi A Clowry GJ Multiple origins of secretagogin expressing cortical GABAergic neuron precursors in the early human fetal telencephalon Front. Neuroanat. 2020 14 61 32982702 PMC7492523

Authors
Schmitz, M. T., Sandoval, K., Chen, C. P., Mostajo-Radji, M. A., Seeley, W. W., Nowakowski, T. J., Ye, C. J., Paredes, M. F., & Pollen, A. A.
Affiliations
University of California, San Francisco (US)
Corresponding author
Pollen, Alex A.
Venue
Nature
Published
2022-03-23
Volume
603
Issue
7903
Pages
871-877
ISSN
  • 0028-0836 (ISSN-L)
  • 1476-4687
OpenAlex
W4221102696
Cited by
111
References
62
Citations by year
2026: 17 · 2025: 32 · 2024: 24 · 2023: 28 · 2022: 10
FWCI
8.61
Type
journal article
Language
en
Open access
Locations
  • Nature (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • eScholarship (California Digital Library) (submittedVersion, cc-by)
Funders
  • Shurl and Kay Curci Foundation
  • Innovative Genomics Institute
  • National Institutes of Health
  • University of California, San Francisco
  • National Institute of Mental Health (RF1MH121268, DP2MH122400, U01MH114825)
  • National Institute of Allergy and Infectious Diseases (R01AI136972)
  • National Institute of Neurological Disorders and Stroke (F31NS124333, P01NS083513, DP2NS122550)
  • Eunice Kennedy Shriver National Institute of Child Health and Human Development (T32HD007470)
Topics
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
Keywords
inhibitory neurons, primate brain evolution, striatum, olfactory bulb, transcriptional programs, progenitor cells, macaque, mice, neurogenesis
MeSH terms
Animals, Corpus Striatum, Biological Evolution, Female, Macaca, Mammals, Neurons, Olfactory Bulb, Pregnancy, Primates, Embryonic Development, Mice, Neurogenesis, Dopaminergic Neurons

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review