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Errors in long-read assemblies can critically affect protein prediction
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“It is important that more than one round of polishing with Illumina reads are performed on the assemblies, as that reduces any issues that might stem from the long reads (133,134).”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [134]
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Cited by
Sorted by citations
Opportunities and challenges in long-read sequencing data analysis
Amarasinghe, S. L., Su, S., Dong, X., Zappia, L., Ritchie, M. E., & Gouil, Q. (2020) · Genome Biology · doi:10.1186/s13059-020-1935-5 · Cited by 2,530
Tørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347
Hybrid genome assembly and annotation of Danionella translucida
Kadobianskyi, M., Schulze, L., Schuelke, M., & Judkewitz, B. (2019) · Scientific Data · doi:10.1038/s41597-019-0161-z · Cited by 36
Metadata
- Authors
- Watson, M., & Warr, A.
- ORCID
- Watson, Mick
- Venue
- Nature Biotechnology
- Published
- 2019-01-22
- Volume
- 37
- Issue
- 2
- Pages
- 124-126
- ISSN
- 1087-0156
- 1546-1696
- Cited by
- 224
- References
- 1
- Language
- en
- Licence
- www.springer.com/tdm (tdm)
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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