The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Establishment of an RNA polymerase II-driven reverse genetics system for Nipah virus strains from Malaysia and Bangladesh
Open accessAbstract
Nipah virus (NiV) has emerged as a highly lethal zoonotic paramyxovirus that is capable of causing a febrile encephalitis and/or respiratory disease in humans for which no vaccines or licensed treatments are currently available. There are two genetically and geographically distinct lineages of NiV: NiV-Malaysia (NiV-M), the strain that caused the initial outbreak in Malaysia, and NiV-Bangladesh (NiV-B), the strain that has been implicated in subsequent outbreaks in India and Bangladesh. NiV-B appears to be both more lethal and have a greater propensity for person-to-person transmission than NiV-M. Here we describe the generation and characterization of stable RNA polymerase II-driven infectious cDNA clones of NiV-M and NiV-B. In vitro , reverse genetics-derived NiV-M and NiV-B were indistinguishable from a wildtype isolate of NiV-M, and both viruses were pathogenic in the Syrian hamster model of NiV infection. We also describe recombinant NiV-M and NiV-B with enhanced green fluorescent protein (EGFP) inserted between the G and L genes that enable rapid and sensitive detection of NiV infection in vitro . This panel of molecular clones will enable studies to investigate the virologic determinants of henipavirus pathogenesis, including the pathogenic differences between NiV-M and NiV-B, and the high-throughput screening of candidate therapeutics.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The chatbots identified detailed protocols and how to troubleshoot them.
“identified detailed protocols and how to troubleshoot them”
From Human innovation and the creative agency of the world in the age of generative AI (2024) · cites this paper as [13]
The Methods passages describe laboratory procedures for Nipah virus research, and the Discussion addresses rescue efficiency. Searches for chatbots and troubleshooting found no passage about chatbots identifying protocols or explaining how to troubleshoot them. (LLM, conf=0.78)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Vignuzzi, M., Stone, J. K., Arnold, J. J., Cameron, C. E., & Andino, R. (2006) · Nature · doi:10.1038/nature04388 · Cited by 1,116
Flagged first, then by citations
Research works printed but not linked: 72
- Chong, H. T. et al. Nipah encephalitis outbreak in Malaysia, clinical features in patients from Seremban. Can J Neurol Sci 29, 83–87 (2002). · DOI
- Goh, K. J. et al. Clinical features of Nipah virus encephalitis among pig farmers in Malaysia. New Engl. J. Med 342, 1229–1235 (2000). · DOI
- Middleton, D. J. et al. Experimental Nipah virus infection in pigs and cats. J Comp Pathol 126, 124–136 (2002). · DOI
- Wong, K. T. et al. A golden hamster model for human acute Nipah virus infection. Am J Pathol 163, 2127–2137 (2003). · DOI
- Bossart, K. N. et al. A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection. PLoS Pathog. 5, e1000642 (2009). · DOI
- Geisbert, T. W. et al. Development of an acute and highly pathogenic nonhuman primate model of Nipah virus infection. PLoS One 5, e10690 (2010). · DOI
- Middleton, D. J. et al. Experimental Nipah virus infection in pteropid bats (Pteropus poliocephalus). J Comp Pathol 136, 266–272 (2007). · DOI
- Chua, K. B. et al. Isolation of Nipah virus from Malaysian Island flying-foxes. Microbes Infect 4, 145–151 (2002). · DOI
- Yob, J. M. et al. Nipah virus infection in bats (order Chiroptera) in peninsular Malaysia. Emerg Infect Dis 7, 439–441 (2001). · DOI
- Lo, M. K. et al. Characterization of Nipah virus from outbreaks in Bangladesh, 2008–2010. Emerg Infect Dis 18, 248–255 (2012). · DOI
- Harcourt, B. H. et al. Genetic characterization of Nipah virus, Bangladesh, 2004. Emerg Infect Dis 11, 1594–1597 (2005). · DOI
- Mohd Nor, M. N., Gan, C. H. & Ong, B. L. Nipah virus infection of pigs in peninsular Malaysia. Rev Sci Tech. 19, 160–165 (2000). · DOI
- Chua, K. B. et al. Fatal encephalitis due to Nipah virus among pig-farmers in Malaysia. Lancet 354, 1257–1259 (1999). · DOI
- Parashar, U. D. et al. Case-control study of risk factors for human infection with a new zoonotic paramyxovirus, Nipah virus, during a 1998–1999 outbreak of severe encephalitis in Malaysia. J. Infect. Dis 181, 1755–1759 (2000). · DOI
- Centers for Disease Control and Prevention (CDC). Update: outbreak of Nipah virus—Malaysia and Singapore, 1999. MMWR Morb Mortal Wkly Rep 48, 335–337 (1999).
- Tan, K. S. et al. Patients with asymptomatic Nipah virus infection may have abnormal cerebral MR imaging. Neurol J of Southeast Asia 5, 69–73 (2000).
- Abdullah, S., Chang, L. Y., Rahmat, K., Goh, K. J. & Tan, C. T. Late-onset Nipah virus encephalitis 11 years after the initial outbreak: a case report. Neurology. Asia 17, 71–74 (2012).
- Chua, K. B. Nipah virus: A recently emergent deadly paramyxovirus. Science 288, 1432–1435 (2000). · DOI
- Rahman, S. A. et al. Risk Factors for Nipah virus infection among pteropid bats, Peninsular Malaysia. Emerg Infect Dis 19, 51–60 (2013). · DOI
- Arankalle, V. A. et al. Genomic characterization of Nipah virus, West Bengal, India. Emerg Infect Dis 17, 907–909 (2011). · DOI
- Chadha, M. S. et al. Nipah virus-associated encephalitis outbreak, Siliguri, India. Emerg Infect Dis 12, 235–240 (2006). · DOI
- Ching, P. K. et al. Outbreak of henipavirus infection, Philippines, 2014. Emerg Infect Dis 21, 328–331 (2015). · DOI
- Hsu, V. P. et al. Nipah virus encephalitis reemergence, Bangladesh. Emerg Infect Dis 10, 2082–2087 (2004). · DOI
- Luby, S. P. et al. Recurrent zoonotic transmission of Nipah virus into humans, Bangladesh, 2001–2007. Emerg Infect Dis 15, 1229–1235 (2009). · DOI
- Gurley, E. S. et al. Person-to-person transmission of Nipah virus in a Bangladeshi community. Emerg Infect Dis 13, 1031–1037 (2007). · DOI
- Lo, M. K. & Rota, P. A. The emergence of Nipah virus, a highly pathogenic paramyxovirus. J Clin Virol 43, 396–400 (2008). · DOI
- Rahman, M. A. et al. Date palm sap linked to Nipah virus outbreak in Bangladesh, 2008. Vector Borne Zoonotic Dis 12, 65–72 (2012). · DOI
- Middleton, D. et al. Hendra virus vaccine, a one health approach to protecting horse, human, and environmental health. Emerg Infect Dis 20, 372–379 (2014). · DOI
- Bossart, K. N. et al. A Hendra virus G glycoprotein subunit vaccine protects African green monkeys from Nipah virus challenge. Sci Transl Med 4, 146ra107 (2012). · DOI
- Bossart, K. N. et al. A neutralizing human monoclonal antibody protects african green monkeys from hendra virus challenge. Sci Transl Med 3, 105ra103 (2011). · DOI
- Chong, H. T. et al. Treatment of acute Nipah encephalitis with ribavirin. Ann Neurol 49, 810–813 (2001). · DOI
- Rockx, B. et al. A novel model of lethal Hendra virus infection in African green monkeys and the effectiveness of ribavirin treatment. J Virol 84, 9831–9839 (2010). · DOI
- Lam, S. K. Nipah virus–a potential agent of bioterrorism? Antiviral Res 57, 113–119 (2003). · DOI
- Luby, S. P. The pandemic potential of Nipah virus. Antiviral Res. 100, 38–43 (2013). · DOI
- Wang, L. M., JS; Broder, CC. in Fields Virology 6th Edition (ed DM; Howley Knipe, PM) Ch. 37, 1070–1085 (Lippincott, Williams, & Wilkins, 2013).
- Wang, L. et al. Molecular biology of Hendra and Nipah viruses. Microbes Infect 3, 279–287 (2001). · DOI
- Mire, C. E. et al. Pathogenic Differences between Nipah Virus Bangladesh and Malaysia Strains in Primates: Implications for Antibody Therapy. Sci Rep 6, 30916 (2016). · DOI
- Marsh, G. A. et al. Recombinant Hendra viruses expressing a reporter gene retain pathogenicity in ferrets. Virol J 10, 95 (2013). · DOI
- Laing, E. D. et al. Rescue and characterization of recombinant cedar virus, a non-pathogenic Henipavirus species. Virol J 15, 56 (2018). · DOI
- Yoneda, M. et al. Establishment of a Nipah virus rescue system. Proc Natl Acad Sci USA 103, 16508–16513 (2006). · DOI · Paper page
- Yun, T. et al. Efficient reverse genetics reveals genetic determinants of budding and fusogenic differences between Nipah and Hendra viruses and enables real-time monitoring of viral spread in small animal models of henipavirus infection. J Virol 89, 1242–1253 (2015). · DOI · Paper page
- Ciancanelli, M. J., Volchkova, V. A., Shaw, M. L., Volchkov, V. E. & Basler, C. F. Nipah virus sequesters inactive STAT1 in the nucleus via a P gene-encoded mechanism. J Virol 83, 7828–7841 (2009). · DOI
- Yoneda, M. et al. The nonstructural proteins of Nipah virus play a key role in pathogenicity in experimentally infected animals. PLoS One 5, e12709, https://doi.org/10.1371/journal.pone.0012709 (2010). · DOI
- Satterfield, B. A. et al. The immunomodulating V and W proteins of Nipah virus determine disease course. Nat Commun 6, 7483, https://doi.org/10.1038/ncomms8483 (2015). · DOI
- Satterfield, B. A. et al. Nipah Virus C and W Proteins Contribute to Respiratory Disease in Ferrets. J Virol 90, 6326–6343 (2016). · DOI
- Lo, M. K., Nichol, S. T. & Spiropoulou, C. F. Evaluation of luciferase and GFP-expressing Nipah viruses for rapid quantitative antiviral screening. Antiviral Res 106, 53–60 (2014). · DOI
- Lo, M. K. et al. Susceptibility of paramyxoviruses and filoviruses to inhibition by 2’-monofluoro- and 2′-difluoro-4′-azidocytidine analogs. Antiviral Res 153, 101–113 (2018). · DOI
- Nagai, Y. Paramyxovirus replication and pathogenesis. Reverse genetics transforms understanding. Rev Med Virol 9, 83–99 (1999). · DOI
- Park, A. et al. Optimized P2A for reporter gene insertion into Nipah virus results in efficient ribosomal skipping and wild-type lethality. J Gen Virol 97, 839–843 (2016). · DOI
- Chan, Y. P., Chua, K. B., Koh, C. L., Lim, M. E. & Lam, S. K. Complete nucleotide sequences of Nipah virus isolates from Malaysia. J General Virol 82, 2151–2155, https://doi.org/10.1099/0022-1317-82-9-2151 (2001). · DOI
- Wong, G. et al. The Makona Variant of Ebola Virus Is Highly Lethal to Immunocompromised Mice and Immunocompetent Ferrets. J Infect Dis, https://doi.org/10.1093/infdis/jiy141 (2018). · DOI
- Beaty, S. M. et al Efficient and Robust Paramyxoviridae Reverse Genetics Systems. mSphere 2 (2017). · DOI
- Berhane, Y. et al. Production and characterization of monoclonal antibodies against binary ethylenimine inactivated Nipah virus. J Virol Methods 132, 59–68, https://doi.org/10.1016/j.jviromet.2005.09.005 (2006). · DOI
- Inoue, K. et al. An improved method for recovering rabies virus from cloned cDNA. J Virol Methods 107, 229–236 (2003). · DOI
- Li, B. Y. et al. Rescue of Newcastle disease virus from cloned cDNA using an RNA polymerase II promoter. Arch Virol 156, 979–986 (2011). · DOI
- Freiberg, A., Dolores, L. K., Enterlein, S. & Flick, R. Establishment and characterization of plasmid-driven minigenome rescue systems for Nipah virus: RNA polymerase I- and T7-catalyzed generation of functional paramyxoviral RNA. Virology 370, 33–44 (2008). · DOI
- Martin, A., Staeheli, P. & Schneider, U. RNA polymerase II-controlled expression of antigenomic RNA enhances the rescue efficacies of two different members of the Mononegavirales independently of the site of viral genome replication. J Virol 80, 5708–5715, https://doi.org/10.1128/JVI.02389-05 (2006). · DOI
- Lo, M. K. et al. Distinct and Overlapping Roles of Nipah Virus P Gene Products in Modulating the Human Endothelial Cell Antiviral Response. PLoS One 7, https://doi.org/10.1371/journal.pone.0047790 (2012). · DOI
- DeBuysscher, B. L. et al. Comparison of the pathogenicity of Nipah virus isolates from Bangladesh and Malaysia in the Syrian hamster. PLoS Negl Trop Dis 7, e2024, https://doi.org/10.1371/journal.pntd.0002024 (2013). · DOI
- Drexler, J. F. et al. Bats host major mammalian paramyxoviruses. Nat. Commun. b, https://doi.org/10.1038/ncomms1796 (2012). · DOI
- Drexler, J. F. et al. Henipavirus RNA in African bats. PLoS One 4, e6367, https://doi.org/10.1371/journal.pone.0006367 (2009). · DOI
- Wu, Z. et al. Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol 86, 10999–11012 (2012). · DOI
- Marsh, G. A. et al. Cedar Virus: A Novel Henipavirus Isolated from Australian Bats. PLoS pathogens 8, e1002836 (2012). · DOI
- Wu, Z. et al. Novel Henipa-like virus, Mojiang Paramyxovirus, in rats, China, 2012. Emerg Infect Dis 20, 1064–1066 (2014).
- Pernet, O. et al. Evidence for henipavirus spillover into human populations in Africa. Nat. Commun. 5, https://doi.org/10.1038/ncomms6342 (2014). · DOI
- Kumar, S., Stecher, G. & Tamura, K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 33, 1870–1874 (2016). · DOI
- Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7, 539 (2011). · DOI
- Tamura, K., Nei, M. & Kumar, S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101, 11030–11035 (2004). · DOI
- Lole, K. S. et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152–160 (1999). · DOI
- Bryksin, A. V. & Matsumura, I. Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. Biotechniques 48, 463–465 (2010). · DOI
- Rouillard, J. M. et al. Gene2Oligo: oligonucleotide design for in vitro gene synthesis. Nucleic Acids Res 32, W176–180 (2004). · DOI
- Reed, L. J. M. H. A simple method of estimating fifty percent endpoints. Am J Hygiene 27, 493–497 (1938).
Cited by
Sorted by citations
Human innovation and the creative agency of the world in the age of generative AI
Peschl, M. F. (2024) · Possibility Studies & Society · doi:10.1177/27538699241238049 · Cited by 30
Metadata
- Authors
- Griffin, B. D., Leung, A., Chan, M., Warner, B. M., Ranadheera, C., Tierney, K., Audet, J., Frost, K. L., Safronetz, D., Embury-Hyatt, C., Booth, S. A., & Kobasa, D.
- Affiliations
- Public Health Agency of Canada (CA)
- Corresponding author
- Kobasa, Darwyn
- ORCID
- Venue
- Scientific Reports
- Published
- 2019-08-01
- Volume
- 9
- Issue
- 1
- Pages
- 11171-11171
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC6671980
- OpenAlex
- W2965062769
- Cited by
- 26
- References
- 1
- Citations by year
- 2026: 3 · 2025: 4 · 2024: 3 · 2023: 5 · 2021: 4 · 2020: 4 · 2019: 3
- FWCI
- 2.09
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- Public Health Agency of Canada
- Topics
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Health Sciences › Medicine › Infectious Diseases › Viral Infections and Vectors
- Health Sciences › Medicine › Infectious Diseases › Viral Infections and Outbreaks Research
- Keywords
- Nipah virus, infectious clone, Syrian hamster model, zoonotic paramyxovirus, human-to-human transmission
- MeSH terms
- Animals, Bangladesh, Disease Outbreaks, Humans, Malaysia, Mesocricetus, RNA Polymerase II, Nipah Virus, Henipavirus Infections, Reverse Genetics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review