Cited by 26Virology and Viral DiseasesViral Infections and VectorsViral Infections and Outbreaks Research

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Establishment of an RNA polymerase II-driven reverse genetics system for Nipah virus strains from Malaysia and Bangladesh

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Abstract

Nipah virus (NiV) has emerged as a highly lethal zoonotic paramyxovirus that is capable of causing a febrile encephalitis and/or respiratory disease in humans for which no vaccines or licensed treatments are currently available. There are two genetically and geographically distinct lineages of NiV: NiV-Malaysia (NiV-M), the strain that caused the initial outbreak in Malaysia, and NiV-Bangladesh (NiV-B), the strain that has been implicated in subsequent outbreaks in India and Bangladesh. NiV-B appears to be both more lethal and have a greater propensity for person-to-person transmission than NiV-M. Here we describe the generation and characterization of stable RNA polymerase II-driven infectious cDNA clones of NiV-M and NiV-B. In vitro , reverse genetics-derived NiV-M and NiV-B were indistinguishable from a wildtype isolate of NiV-M, and both viruses were pathogenic in the Syrian hamster model of NiV infection. We also describe recombinant NiV-M and NiV-B with enhanced green fluorescent protein (EGFP) inserted between the G and L genes that enable rapid and sensitive detection of NiV infection in vitro . This panel of molecular clones will enable studies to investigate the virologic determinants of henipavirus pathogenesis, including the pathogenic differences between NiV-M and NiV-B, and the high-throughput screening of candidate therapeutics.

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  1. Chong, H. T. et al. Nipah encephalitis outbreak in Malaysia, clinical features in patients from Seremban. Can J Neurol Sci 29, 83–87 (2002). · DOI
  2. Goh, K. J. et al. Clinical features of Nipah virus encephalitis among pig farmers in Malaysia. New Engl. J. Med 342, 1229–1235 (2000). · DOI
  3. Middleton, D. J. et al. Experimental Nipah virus infection in pigs and cats. J Comp Pathol 126, 124–136 (2002). · DOI
  4. Wong, K. T. et al. A golden hamster model for human acute Nipah virus infection. Am J Pathol 163, 2127–2137 (2003). · DOI
  5. Bossart, K. N. et al. A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection. PLoS Pathog. 5, e1000642 (2009). · DOI
  6. Geisbert, T. W. et al. Development of an acute and highly pathogenic nonhuman primate model of Nipah virus infection. PLoS One 5, e10690 (2010). · DOI
  7. Middleton, D. J. et al. Experimental Nipah virus infection in pteropid bats (Pteropus poliocephalus). J Comp Pathol 136, 266–272 (2007). · DOI
  8. Chua, K. B. et al. Isolation of Nipah virus from Malaysian Island flying-foxes. Microbes Infect 4, 145–151 (2002). · DOI
  9. Yob, J. M. et al. Nipah virus infection in bats (order Chiroptera) in peninsular Malaysia. Emerg Infect Dis 7, 439–441 (2001). · DOI
  10. Lo, M. K. et al. Characterization of Nipah virus from outbreaks in Bangladesh, 2008–2010. Emerg Infect Dis 18, 248–255 (2012). · DOI
  11. Harcourt, B. H. et al. Genetic characterization of Nipah virus, Bangladesh, 2004. Emerg Infect Dis 11, 1594–1597 (2005). · DOI
  12. Mohd Nor, M. N., Gan, C. H. & Ong, B. L. Nipah virus infection of pigs in peninsular Malaysia. Rev Sci Tech. 19, 160–165 (2000). · DOI
  13. Chua, K. B. et al. Fatal encephalitis due to Nipah virus among pig-farmers in Malaysia. Lancet 354, 1257–1259 (1999). · DOI
  14. Parashar, U. D. et al. Case-control study of risk factors for human infection with a new zoonotic paramyxovirus, Nipah virus, during a 1998–1999 outbreak of severe encephalitis in Malaysia. J. Infect. Dis 181, 1755–1759 (2000). · DOI
  15. Centers for Disease Control and Prevention (CDC). Update: outbreak of Nipah virus—Malaysia and Singapore, 1999. MMWR Morb Mortal Wkly Rep 48, 335–337 (1999).
  16. Tan, K. S. et al. Patients with asymptomatic Nipah virus infection may have abnormal cerebral MR imaging. Neurol J of Southeast Asia 5, 69–73 (2000).
  17. Abdullah, S., Chang, L. Y., Rahmat, K., Goh, K. J. & Tan, C. T. Late-onset Nipah virus encephalitis 11 years after the initial outbreak: a case report. Neurology. Asia 17, 71–74 (2012).
  18. Chua, K. B. Nipah virus: A recently emergent deadly paramyxovirus. Science 288, 1432–1435 (2000). · DOI
  19. Rahman, S. A. et al. Risk Factors for Nipah virus infection among pteropid bats, Peninsular Malaysia. Emerg Infect Dis 19, 51–60 (2013). · DOI
  20. Arankalle, V. A. et al. Genomic characterization of Nipah virus, West Bengal, India. Emerg Infect Dis 17, 907–909 (2011). · DOI
  21. Chadha, M. S. et al. Nipah virus-associated encephalitis outbreak, Siliguri, India. Emerg Infect Dis 12, 235–240 (2006). · DOI
  22. Ching, P. K. et al. Outbreak of henipavirus infection, Philippines, 2014. Emerg Infect Dis 21, 328–331 (2015). · DOI
  23. Hsu, V. P. et al. Nipah virus encephalitis reemergence, Bangladesh. Emerg Infect Dis 10, 2082–2087 (2004). · DOI
  24. Luby, S. P. et al. Recurrent zoonotic transmission of Nipah virus into humans, Bangladesh, 2001–2007. Emerg Infect Dis 15, 1229–1235 (2009). · DOI
  25. Gurley, E. S. et al. Person-to-person transmission of Nipah virus in a Bangladeshi community. Emerg Infect Dis 13, 1031–1037 (2007). · DOI
  26. Lo, M. K. & Rota, P. A. The emergence of Nipah virus, a highly pathogenic paramyxovirus. J Clin Virol 43, 396–400 (2008). · DOI
  27. Rahman, M. A. et al. Date palm sap linked to Nipah virus outbreak in Bangladesh, 2008. Vector Borne Zoonotic Dis 12, 65–72 (2012). · DOI
  28. Middleton, D. et al. Hendra virus vaccine, a one health approach to protecting horse, human, and environmental health. Emerg Infect Dis 20, 372–379 (2014). · DOI
  29. Bossart, K. N. et al. A Hendra virus G glycoprotein subunit vaccine protects African green monkeys from Nipah virus challenge. Sci Transl Med 4, 146ra107 (2012). · DOI
  30. Bossart, K. N. et al. A neutralizing human monoclonal antibody protects african green monkeys from hendra virus challenge. Sci Transl Med 3, 105ra103 (2011). · DOI
  31. Chong, H. T. et al. Treatment of acute Nipah encephalitis with ribavirin. Ann Neurol 49, 810–813 (2001). · DOI
  32. Rockx, B. et al. A novel model of lethal Hendra virus infection in African green monkeys and the effectiveness of ribavirin treatment. J Virol 84, 9831–9839 (2010). · DOI
  33. Lam, S. K. Nipah virus–a potential agent of bioterrorism? Antiviral Res 57, 113–119 (2003). · DOI
  34. Luby, S. P. The pandemic potential of Nipah virus. Antiviral Res. 100, 38–43 (2013). · DOI
  35. Wang, L. M., JS; Broder, CC. in Fields Virology 6th Edition (ed DM; Howley Knipe, PM) Ch. 37, 1070–1085 (Lippincott, Williams, & Wilkins, 2013).
  36. Wang, L. et al. Molecular biology of Hendra and Nipah viruses. Microbes Infect 3, 279–287 (2001). · DOI
  37. Mire, C. E. et al. Pathogenic Differences between Nipah Virus Bangladesh and Malaysia Strains in Primates: Implications for Antibody Therapy. Sci Rep 6, 30916 (2016). · DOI
  38. Marsh, G. A. et al. Recombinant Hendra viruses expressing a reporter gene retain pathogenicity in ferrets. Virol J 10, 95 (2013). · DOI
  39. Laing, E. D. et al. Rescue and characterization of recombinant cedar virus, a non-pathogenic Henipavirus species. Virol J 15, 56 (2018). · DOI
  40. Yoneda, M. et al. Establishment of a Nipah virus rescue system. Proc Natl Acad Sci USA 103, 16508–16513 (2006). · DOI · Paper page
  41. Yun, T. et al. Efficient reverse genetics reveals genetic determinants of budding and fusogenic differences between Nipah and Hendra viruses and enables real-time monitoring of viral spread in small animal models of henipavirus infection. J Virol 89, 1242–1253 (2015). · DOI · Paper page
  42. Ciancanelli, M. J., Volchkova, V. A., Shaw, M. L., Volchkov, V. E. & Basler, C. F. Nipah virus sequesters inactive STAT1 in the nucleus via a P gene-encoded mechanism. J Virol 83, 7828–7841 (2009). · DOI
  43. Yoneda, M. et al. The nonstructural proteins of Nipah virus play a key role in pathogenicity in experimentally infected animals. PLoS One 5, e12709, https://doi.org/10.1371/journal.pone.0012709 (2010). · DOI
  44. Satterfield, B. A. et al. The immunomodulating V and W proteins of Nipah virus determine disease course. Nat Commun 6, 7483, https://doi.org/10.1038/ncomms8483 (2015). · DOI
  45. Satterfield, B. A. et al. Nipah Virus C and W Proteins Contribute to Respiratory Disease in Ferrets. J Virol 90, 6326–6343 (2016). · DOI
  46. Lo, M. K., Nichol, S. T. & Spiropoulou, C. F. Evaluation of luciferase and GFP-expressing Nipah viruses for rapid quantitative antiviral screening. Antiviral Res 106, 53–60 (2014). · DOI
  47. Lo, M. K. et al. Susceptibility of paramyxoviruses and filoviruses to inhibition by 2’-monofluoro- and 2′-difluoro-4′-azidocytidine analogs. Antiviral Res 153, 101–113 (2018). · DOI
  48. Nagai, Y. Paramyxovirus replication and pathogenesis. Reverse genetics transforms understanding. Rev Med Virol 9, 83–99 (1999). · DOI
  49. Park, A. et al. Optimized P2A for reporter gene insertion into Nipah virus results in efficient ribosomal skipping and wild-type lethality. J Gen Virol 97, 839–843 (2016). · DOI
  50. Chan, Y. P., Chua, K. B., Koh, C. L., Lim, M. E. & Lam, S. K. Complete nucleotide sequences of Nipah virus isolates from Malaysia. J General Virol 82, 2151–2155, https://doi.org/10.1099/0022-1317-82-9-2151 (2001). · DOI
  51. Wong, G. et al. The Makona Variant of Ebola Virus Is Highly Lethal to Immunocompromised Mice and Immunocompetent Ferrets. J Infect Dis, https://doi.org/10.1093/infdis/jiy141 (2018). · DOI
  52. Beaty, S. M. et al Efficient and Robust Paramyxoviridae Reverse Genetics Systems. mSphere 2 (2017). · DOI
  53. Berhane, Y. et al. Production and characterization of monoclonal antibodies against binary ethylenimine inactivated Nipah virus. J Virol Methods 132, 59–68, https://doi.org/10.1016/j.jviromet.2005.09.005 (2006). · DOI
  54. Inoue, K. et al. An improved method for recovering rabies virus from cloned cDNA. J Virol Methods 107, 229–236 (2003). · DOI
  55. Li, B. Y. et al. Rescue of Newcastle disease virus from cloned cDNA using an RNA polymerase II promoter. Arch Virol 156, 979–986 (2011). · DOI
  56. Freiberg, A., Dolores, L. K., Enterlein, S. & Flick, R. Establishment and characterization of plasmid-driven minigenome rescue systems for Nipah virus: RNA polymerase I- and T7-catalyzed generation of functional paramyxoviral RNA. Virology 370, 33–44 (2008). · DOI
  57. Martin, A., Staeheli, P. & Schneider, U. RNA polymerase II-controlled expression of antigenomic RNA enhances the rescue efficacies of two different members of the Mononegavirales independently of the site of viral genome replication. J Virol 80, 5708–5715, https://doi.org/10.1128/JVI.02389-05 (2006). · DOI
  58. Lo, M. K. et al. Distinct and Overlapping Roles of Nipah Virus P Gene Products in Modulating the Human Endothelial Cell Antiviral Response. PLoS One 7, https://doi.org/10.1371/journal.pone.0047790 (2012). · DOI
  59. DeBuysscher, B. L. et al. Comparison of the pathogenicity of Nipah virus isolates from Bangladesh and Malaysia in the Syrian hamster. PLoS Negl Trop Dis 7, e2024, https://doi.org/10.1371/journal.pntd.0002024 (2013). · DOI
  60. Drexler, J. F. et al. Bats host major mammalian paramyxoviruses. Nat. Commun. b, https://doi.org/10.1038/ncomms1796 (2012). · DOI
  61. Drexler, J. F. et al. Henipavirus RNA in African bats. PLoS One 4, e6367, https://doi.org/10.1371/journal.pone.0006367 (2009). · DOI
  62. Wu, Z. et al. Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol 86, 10999–11012 (2012). · DOI
  63. Marsh, G. A. et al. Cedar Virus: A Novel Henipavirus Isolated from Australian Bats. PLoS pathogens 8, e1002836 (2012). · DOI
  64. Wu, Z. et al. Novel Henipa-like virus, Mojiang Paramyxovirus, in rats, China, 2012. Emerg Infect Dis 20, 1064–1066 (2014).
  65. Pernet, O. et al. Evidence for henipavirus spillover into human populations in Africa. Nat. Commun. 5, https://doi.org/10.1038/ncomms6342 (2014). · DOI
  66. Kumar, S., Stecher, G. & Tamura, K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 33, 1870–1874 (2016). · DOI
  67. Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7, 539 (2011). · DOI
  68. Tamura, K., Nei, M. & Kumar, S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101, 11030–11035 (2004). · DOI
  69. Lole, K. S. et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152–160 (1999). · DOI
  70. Bryksin, A. V. & Matsumura, I. Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. Biotechniques 48, 463–465 (2010). · DOI
  71. Rouillard, J. M. et al. Gene2Oligo: oligonucleotide design for in vitro gene synthesis. Nucleic Acids Res 32, W176–180 (2004). · DOI
  72. Reed, L. J. M. H. A simple method of estimating fifty percent endpoints. Am J Hygiene 27, 493–497 (1938).

Cited by

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Metadata

Authors
Griffin, B. D., Leung, A., Chan, M., Warner, B. M., Ranadheera, C., Tierney, K., Audet, J., Frost, K. L., Safronetz, D., Embury-Hyatt, C., Booth, S. A., & Kobasa, D.
Affiliations
Public Health Agency of Canada (CA)
Corresponding author
Kobasa, Darwyn
Venue
Scientific Reports
Published
2019-08-01
Volume
9
Issue
1
Pages
11171-11171
ISSN
2045-2322 (ISSN-L)
OpenAlex
W2965062769
Cited by
26
References
1
Citations by year
2026: 3 · 2025: 4 · 2024: 3 · 2023: 5 · 2021: 4 · 2020: 4 · 2019: 3
FWCI
2.09
Type
journal article
Language
en
Open access
Locations
  • Scientific Reports (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders
Public Health Agency of Canada
Topics
  • Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
  • Health Sciences › Medicine › Infectious Diseases › Viral Infections and Vectors
  • Health Sciences › Medicine › Infectious Diseases › Viral Infections and Outbreaks Research
Keywords
Nipah virus, infectious clone, Syrian hamster model, zoonotic paramyxovirus, human-to-human transmission
MeSH terms
Animals, Bangladesh, Disease Outbreaks, Humans, Malaysia, Mesocricetus, RNA Polymerase II, Nipah Virus, Henipavirus Infections, Reverse Genetics

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