Cited by 30Artificial Intelligence in Healthcare and EducationMachine Learning in HealthcareArtificial Intelligence in Healthcare

Automating expert-level medical reasoning evaluation of large language models

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Zhou, Shuang, Xie, Wenya, Li, Jiaxi, Zhan, Zaifu, Song, Meijia, Yang, Han, Espinoza, Cheyenna, Welton, Lindsay +11 more·2025·npj Digital Medicine

Abstract

As large language models (LLMs) become increasingly integrated into clinical decision-making, ensuring trustworthy reasoning is paramount. However, current evaluation strategies of LLMs’ medical reasoning capability either suffer from unsatisfactory assessment or poor scalability, and a rigorous benchmark remains absent. To address this, we present MedThink-Bench, a benchmark designed for rigorous and scalable assessment of LLMs’ medical reasoning. MedThink-Bench comprises 500 high-complexity questions spanning ten medical domains, accompanied by expert-authored, step-by-step rationales that elucidate intermediate reasoning processes. Further, we introduce LLM-w-Rationale, an evaluation framework that combines fine-grained rationale assessment with an LLM-as-a-Judge paradigm, enabling expert-level fidelity in evaluating reasoning quality while preserving scalability. Results show that LLM-w-Rationale correlates strongly with expert evaluation (Pearson coefficient up to 0.87) while requiring only 1.4% of the evaluation time. Overall, MedThink-Bench establishes a rigorous and scalable standard for evaluating medical reasoning in LLMs, advancing their safe and responsible deployment in clinical practice.

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  • Open-source alternatives now match or exceed proprietary models in reasoning quality.

    “they now match or exceed proprietary models in reasoning quality [82]”

    From Explainability of decoder-only clinical large language models: A scoping review (2026) · cites this paper as [82]

    The Discussion reports that some open-source models outperformed commercial models on MedThink-Bench’s medical-reasoning evaluation. The claim is broader than that finding: the paper does not establish that open-source alternatives generally match or exceed proprietary models across reasoning tasks. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • Open-source models demonstrate competitive performance in reasoning quality.

    “The demonstrated competitive performance of open-source models in reasoning quality [82]”

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References 55 · Cited by 30

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  1. [1]Zhou, S. et al. Large language models for disease diagnosis: a scoping review. npj Artif. Intell. 1, 9 (2025). 40607112 PMC12216946 · DOI
  2. [3]Truhn, D. et al. A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports. Sci. Rep. 13, 20159 (2023). 37978240 PMC10656559 · DOI · Paper page
  3. [4]Goh, E. et al. GPT-4 assistance for improvement of physician performance on patient care tasks: a randomized controlled trial. Nat. Med. 31, 1233–1238 (2025). 39910272 PMC12380382 · DOI
  4. [7]Li, J. et al. Fact or guesswork? Evaluating large language model’s medical knowledge with structured one-hop judgment. Preprint at arXiv10.48550/arXiv.2502.14275 (2025).
  5. [8]Zhou, S. et al. Uncertainty-aware large language models for explainable disease diagnosis. npj Digit. Med. 8, 690 (2025). 41254208 PMC12627459 · DOI · Paper page
  6. [12]Liu, W. et al. Mitigating hallucination through theory-consistent Symmetric Multimodal Preference Optimization. Preprint at arXiv10.48550/arXiv.2506.11712 (2025).
  7. [13]Mündler, N., He, J., Jenko, S. & Vechev, M. T. Self-contradictory hallucinations of large language models: evaluation, detection and mitigation. In Proc. International Conference on Learning Representations (ICLR, 2024).
  8. [14]Haltaufderheide, J. & Ranisch, R. The ethics of ChatGPT in medicine and healthcare: a systematic review on Large Language Models (LLMs). npj Digit. Med. 7, 183 (2024). 38977771 PMC11231310 · DOI · Paper page
  9. [16]Kim, H. et al. Small language models learn enhanced reasoning skills from medical textbooks. npj Digit. Med. 8, 240 (2025). 40316765 PMC12048634 · DOI
  10. [17]Wang, W. et al. Medical reasoning in the era of LLMs: a systematic review of enhancement techniques and applications. Preprint at arXiv10.48550/arXiv.2508.00669 (2025).
  11. [18]Peng, Q. et al. Aligning clinical needs and AI capabilities: a survey on LLMs for medical reasoning. Preprint at techrxiv 10.36227/techrxiv.175790907.73315176/v1 (2025). · DOI
  12. [19]Zhu, Y. et al. DiagnosisArena: benchmarking diagnostic reasoning for large language models. Preprint at arXiv10.48550/arXiv.2505.14107 (2025).
  13. [20]Tang, X. et al. MedAgentsBench: benchmarking thinking models and agent frameworks for complex medical reasoning. Preprint at arXiv10.48550/arXiv.2503.07459 (2025).
  14. [21]Zuo, Y. et al. MedXpertQA: Benchmarking Expert-Level Medical Reasoning and Understanding. In Proc.Forty-Second International Conference on Machine Learning, International Conference on Machine Learning (ICML, 2025).
  15. [22]Singhal, K. et al. Large language models encode clinical knowledge. Nature 620, 172–180 (2023). 37438534 PMC10396962 · DOI · Paper page
  16. [23]Yang, H. et al. Large language model Synergy for ensemble learning in Medical Question Answering: design and evaluation study. J. Med. Internet Res. 27, e70080 (2025). 40658884 PMC12337233 · DOI
  17. [24]Jin, Q. et al. Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine. npj Digit. Med. 7, 190 (2024). 39043988 PMC11266508 · DOI · Paper page
  18. [26]Zhou, S. et al. Explainable differential diagnosis with dual-inference large language models. npj Health Syst. 2, 12 (2025). 40291514 PMC12021655 · DOI · Paper page
  19. [27]Kim, Y. et al. MedExQA: Medical Question Answering Benchmark with Multiple Explanations. In Proc.23rd Workshop on Biomedical Natural Language Processing, 167–181 (Association for Computational Linguistics, 2024).
  20. [28]Brodeur, P. G. et al. Superhuman performance of a large language model on the reasoning tasks of a physician. Preprint at arXiv10.48550/arXiv.2412.10849 (2024).
  21. [30]Li, D. et al. ExplainCPE: A Free-text Explanation Benchmark of Chinese Pharmacist Examination. Findings of the Association for Computational Linguistics: EMNLP 2023, 1922–40 (Association for Computational Linguistics, 2023).
  22. [31]Qiu, P. et al. Quantifying the reasoning abilities of LLMs on clinical cases. Nat. Commun. 16, 9799 (2025). 41198657 PMC12592457 · DOI · Paper page
  23. [32]Papineni, K., Roukos, S., Ward, T. & Zhu, W.-J. BLEU. In Proc. 40th Annual Meeting on Association for Computational Linguistics - ACL ’02. 10.3115/1073083.1073135 (Association for Computational Linguistics, 2001). · DOI · Paper page
  24. [33]Lin, C.-Y. ROUGE: A Package for Automatic Evaluation of Summaries. In Text Summarization Branches Out. 74–81 (Association for Computational Linguistics, Barcelona, Spain, 2004).
  25. [34]Zhang, T. et al. BERTScore: Evaluating Text Generation with BERT. International Conference on Learning Representations (2020).
  26. [35]Liu, L. et al. Towards automatic evaluation for LLMs’ clinical capabilities: Metric, data, and algorithm. In Proc. 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining Vol. 614, 5466–5475 (ACM, 2024).
  27. [36]Croxford, E. et al. Current and future state of evaluation of large language models for medical summarization tasks. npj Health Syst. 2, 6 (2025). 40124388 PMC11928168 · DOI
  28. [37]Wu, K. et al. MedCaseReasoning: evaluating and learning diagnostic reasoning from clinical case reports. Preprint at arXiv10.48550/arXiv.2505.11733 (2025).
  29. [38]Ding, C. et al. Building a human-verified clinical reasoning dataset via a human LLM hybrid pipeline for trustworthy medical AI. Preprint at arXiv10.48550/arXiv.2505.06912 (2025).
  30. [39]Chen, X. et al. FFA-GPT: an automated pipeline for fundus fluorescein angiography interpretation and question-answer. npj Digit. Med. 7, 111 (2024). 38702471 PMC11068733 · DOI · Paper page
  31. [43]Zhang, H. et al. HuatuoGPT, Towards Taming Language Model to Be a Doctor. Findings of the Association for Computational Linguistics: EMNLP 2023, 10859–10885 (Association for Computational Linguistics, 2023).
  32. [45]Wei, J. et al. Chain-of-Thought Prompting Elicits Reasoning in Large Language Models. In Proc.36th International Conference on Neural Information Processing Systems (Curran Associates Inc., 2022).
  33. [46]Zhou, S. et al. Mitigating ethical issues for large language models in oncology: a systematic review. JCO Clin. Cancer Inform. 9, e2500076 (2025). 40991877 · DOI
  34. [47]Gu, J. et al. A survey on LLM-as-a-Judge. arXiv10.48550/arXiv.2411.15594 (2024).
  35. [48]Chen, H., Fang, Z., Singla, Y. & Dredze, M. Benchmarking large language models on answering and explaining challenging medical questions. In Proc. 2025 Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies(Volume 1: Long Papers) (eds Chiruzzo, L., Ritter, A. & Wang, L.) 3563–3599 (Association for Computational Linguistics, 2025).
  36. [50]Kim, Y., Wu, J., Abdulle, Y. & Wu, H. MedExQA: medical question answering benchmark with multiple explanations. In Proc. 23rd Workshop on Biomedical Natural Language Processing (eds Demner-Fushman, D., Ananiadou, S., Miwa, M., Roberts, K. & Tsujii, J.) 167–181 (Association for Computational Linguistics, 2024).
  37. [51]Phan, L. et al. Humanity’s last exam. Preprint at arXiv10.48550/arXiv.2501.14249 (2025).
  38. [53]Jin, Q., Dhingra, B., Liu, Z., Cohen, W. & Lu, X. PubMedQA: A Dataset for Biomedical Research Question Answering. In Proc. 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP) (eds Inui, K., Jiang, J., Ng, V. & Wan, X.) 2567–2577 (Association for Computational Linguistics, 2019).
  39. [55]Hendrycks, Dan, Collin Burns, Steven Basart, Andy Zou, Mantas Mazeika, Dawn Song, and Jacob Steinhardt. Measuring Massive Multitask Language Understanding. In Proc. International Conference on Learning Representations (ICLR, 2021).
  40. [56]Vilares, D. & Gómez-Rodríguez, C. HEAD-QA: a healthcare dataset for complex reasoning. In Proc. 57th Annual Meeting of the Association for Computational Linguistics (eds Korhonen, A., Traum, D. & Màrquez, L.) 960–966 (Association for Computational Linguistics, 2019).
  41. [57]Banerjee, S. & Alon, L. METEOR: An Automatic Metric for MT Evaluation with Improved Correlation with Human Judgments. In Proc.ACL Workshop on Intrinsic and Extrinsic Evaluation Measures for Machine Translation and/or Summarization, 65–72 (Association for Computational Linguistics, 2005).
  42. [58]Sellam, T. et al. BLEURT: Learning Robust Metrics for Text Generation. In Proc. 58th Annual Meeting of the Association for Computational Linguistics, 7881-7892 (Association for Computational Linguistics, 2020).
  43. [59]Wei, H. et al. Systematic evaluation of LLM-as-a-judge in LLM alignment tasks: explainable metrics and diverse prompt templates. Preprint at arXiv10.48550/arXiv.2408.13006 (2024).
  44. [60]Open AI et al. GPT-4o System Card. Preprint at arXiv10.48550/arXiv.2408.13006 (2024).
  45. [62]Comanici, G. et al. Gemini 2.5: Pushing the frontier with advanced reasoning, multimodality, long context, and next generation agentic capabilities. 207, 06261 (2025).
  46. [63]Wang, B. et al. Baichuan-M1: pushing the medical capability of large language models. Preprint at arXiv10.48550/arXiv.2502.12671 (2025).
  47. [65]Christophe, C., Kanithi, P. K., Raha, T., Khan, S. & Pimentel, M. A. F. Med42-v2: A suite of clinical LLMs. Preprint at arXiv10.48550/arXiv.2408.06142 (2024).
  48. [66]Grattafiori, A. et al. The Llama 3 herd of models. Preprint at arXiv10.48550/arXiv.2407.21783 (2024).
  49. [69]Kruskal, W. H. & Wallis, W. A. Use of ranks in one-criterion variance analysis. J. Am. Stat. Assoc. 47, 583 (1952). · DOI · Paper page

Authors
Zhou, S., Xie, W., Li, J., Zhan, Z., Song, M., Yang, H., Espinoza, C., Welton, L., Mai, X., Jin, Y., Xu, Z., Chung, Y.-H., Xing, Y., Tsai, M.-H., Schaffer, E., Shi, Y., Liu, N., Liu, Z., & Zhang, R.
Affiliations
  • University of Minnesota (US)
  • University of Georgia (US)
  • University of Virginia (US)
  • Columbia University (US)
  • University of California, San Francisco (US)
  • University of Colorado Anschutz (US)
Corresponding author
Zhang, Rui
Venue
npj Digital Medicine
Published
2025-12-06
Volume
9
Issue
1
Pages
34-34
ISSN
2398-6352 (ISSN-L)
OpenAlex
W4417075517
Cited by
30
References
55
Citations by year
2026: 29 · 2025: 1
FWCI
7.22
Type
journal article
Language
en
Open access
Locations
  • npj Digital Medicine (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • arXiv (Cornell University) (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • arXiv (Cornell University)
Funders
  • National Institutes of Health’s National Center (R01AT009457)
  • National Institute on Aging (R01AG078154)
  • National Cancer Institute (R01CA287413)
Topics
  • Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
  • Physical Sciences › Computer Science › Artificial Intelligence › Machine Learning in Healthcare
  • Health Sciences › Health Professions › Health Information Management › Artificial Intelligence in Healthcare
Keywords
large language models, medical reasoning, LLM evaluation, benchmark, LLM-as-a-judge, expert evaluation, clinical decision support

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