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Drug discovery with explainable artificial intelligence
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“Modern algorithms such as “transformer models”, which have found tremendous success in the field of natural language processing and computer vision, have been applied to identify relevant atoms in a ligand or to pinpoint important residues in a protein binding site.274”
From Advancing Targeted Protein Degradation via Multiomics Profiling and Artificial Intelligence (2023) · cites this paper as [274]
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A Deep-Learning Approach toward Rational Molecular Docking Protocol Selection
Jiménez-Luna, J., Cuzzolin, A., Bolcato, G., Sturlese, M., & Moro, S. (2020) · Molecules · doi:10.3390/molecules25112487 · Cited by 30
Self-citationUsing beta binomials to estimate classification uncertainty for ensemble models
Clark, R. D., Liang, W., Lee, A. C., Lawless, M. S., Fraczkiewicz, R., & Waldman, M. (2014) · Journal of Cheminformatics · doi:10.1186/1758-2946-6-34 · Cited by 26
Towards better understanding of gradient-based attribution methods for Deep Neural NetworksPreprint
Ancona, M., Ceolini, E., Öztireli, C., et al. (2017) · Zurich Open Repository and Archive (University of Zurich) · doi:10.48550/arxiv.1711.06104 · Cited by 26
Interpretable & Explorable Approximations of Black Box Models
Lakkaraju, H., Kamar, E., Caruana, R., & Leskovec, J. (2017) · arXiv · doi:10.48550/arxiv.1707.01154 · Cited by 23
De novo Molecular Design with Generative Long Short-term Memory
Grisoni, F., & Schneider, G. (2019) · CHIMIA International Journal for Chemistry · doi:10.2533/chimia.2019.1006 · Cited by 18
Self-citationSemi-supervised learning of hierarchical representations of molecules using neural message passingPreprint
Nguyen, H. N., Maeda, S., & Oono, K. (2017) · arXiv (Cornell University) · doi:10.48550/arxiv.1711.10168 · Cited by 10
Focks, A., Grisoni, F., Barsi, A., & Vighi, M. (2018) · Integrated Environmental Assessment and Management · doi:10.1002/ieam.4039 · Cited by 5
Self-citationInterpretable Retrosynthesis Prediction in Two StepsPreprint
Yan, C., Ding, Q., Zheng, S., et al. (2020) · ChemRxiv · doi:10.26434/chemrxiv.11869692.v1 · Cited by 3
An integrated system to represent and manage medical knowledge.
Fiore, M., Sicurello, F., & Indorato, G. (1995) · PubMed · Cited by 1
Wallach, I., Dzamba, M., & Heifets, A. (2015) · arXiv · doi:10.48550/arxiv.1510.02855
Research works printed but not linked: 8
- Goebel, R. et al. Explainable AI: the new 42? In Machine Learning and Knowledge Extraction. CD-MAKE 2018. Lecture Notes in Computer Science Vol. 11015 (eds Holzinger, A., Kieseberg, P., Tjoa, A. & Weippl, E) (Springer, 2018).
- Chander, A., Srinivasan, R., Chelian, S., Wang, J. & Uchino, K. Working with beliefs: AI transparency in the enterprise. In Joint Proceedings of the ACM IUI 2018 Workshops co-located with the 23rd ACM Conference on Intelligent User Interfaces 2068 (eds Said, A. & Komatsu, T.) (CEUR-WS.org, 2018).
- Wachter, S., Mittelstadt, B. & Russell, C. Counterfactual explanations without opening the black box: automated decisions and the GDPR. Harv. J. Law Technol. 31, 841–888 (2017).
- Baldassarre, F. & Azizpour, H. Explainability techniques for graph convolutional networks. In International Conference on Machine Learning (ICML) Workshops, 2019 Workshop on Learning and Reasoning with Graph-Structured Representations (ICML, 2019).
- Leake, D. B. in Case-based Reasoning: Experiences, Lessons and Future Directions, ch. 2 (ed. Leake, D. B.) (MIT Press, 1996).
- Vinyals, O., Blundell, C., Lillicrap, T., Kavukcuoglu, K. & Wierstra, D. Matching networks for one shot learning. Adv. Neural Inf. Process. Syst. 29, 3630–3638 (2016).
- Lakshminarayanan, B., Pritzel, A. & Blundell, C. Simple and scalable predictive uncertainty estimation using deep ensembles. Adv. Neural Inf. Process. Syst. 30, 6402–6413 (2017).
- Huang, G. et al. Snapshot ensembles: train one, get m for free. Preprint at https://arxiv.org/abs/1704.00109 (2017). · arXiv
Cited by
Sorted by citations
Why 90% of clinical drug development fails and how to improve it?
Sun, D., Gao, W., Hu, H., & Zhou, S. (2022) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2022.02.002 · Cited by 1,763
Artificial intelligence to deep learning: machine intelligence approach for drug discovery
Gupta, R., Srivastava, D., Sahu, M., Tiwari, S., Ambasta, R. K., & Kumar, P. (2021) · Molecular Diversity · doi:10.1007/s11030-021-10217-3 · Cited by 1,473
“However, the introduction of AI has given a broader scope to develop new approaches that can improve and optimize drug discovery [442].”
BackgroundCombining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems
Keith, J. A., Vassilev-Galindo, V., Cheng, B., Chmiela, S., Gastegger, M., Müller, K.-R., & Tkatchenko, A. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00107 · Cited by 849
SHIFTing artificial intelligence to be responsible in healthcare: a systematic review
Siala, H., & Wang, Y. (2022) · Social Science & Medicine · doi:10.1016/j.socscimed.2022.114782 · Cited by 358
Graph representation learning in biomedicine and healthcare
Li, M. M., Huang, K., & Zitnik, M. (2022) · Nature Biomedical Engineering · doi:10.1038/s41551-022-00942-x · Cited by 294
“Biomedically focused review articles have surveyed the use of GNNs for molecular generation 33,34 , single-cell biology 35 , drug discovery and drug repurposing 36–40 , and histopathology 41 .”
Metadata
- Authors
- Jiménez-Luna, J., Grisoni, F., & Schneider, G.
- Affiliations
- ETH Zurich (CH)
- Corresponding author
- Schneider, Gisbert
- Venue
- Nature Machine Intelligence
- Published
- 2020-10-13
- Volume
- 2
- Issue
- 10
- Pages
- 573-584
- ISSN
- 2522-5839 (ISSN-L)
- OpenAlex
- W3039995705
- Cited by
- 1,063
- References
- 210
- Citations by year
- 2026: 202 · 2025: 201 · 2024: 219 · 2023: 203 · 2022: 132 · 2021: 98 · 2020: 7
- FWCI
- 43.34
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Nature Machine Intelligence (publishedVersion)
- arXiv (Cornell University)
- Funders
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (205321_182176)
- Boehringer Ingelheim
- Topics
- Physical Sciences › Computer Science › Artificial Intelligence › Explainable Artificial Intelligence (XAI)
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Keywords
- explainable AI, drug discovery, deep learning interpretability, molecular structure prediction, molecular property prediction
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