The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Uncertainty-driven dynamics for active learning of interatomic potentials
Open accessAbstract
Machine learning (ML) models, if trained to data sets of high-fidelity quantum simulations, produce accurate and efficient interatomic potentials. Active learning (AL) is a powerful tool to iteratively generate diverse data sets. In this approach, the ML model provides an uncertainty estimate along with its prediction for each new atomic configuration. If the uncertainty estimate passes a certain threshold, then the configuration is included in the data set. Here we develop a strategy to more rapidly discover configurations that meaningfully augment the training data set. The approach, uncertainty-driven dynamics for active learning (UDD-AL), modifies the potential energy surface used in molecular dynamics simulations to favor regions of configuration space for which there is large model uncertainty. The performance of UDD-AL is demonstrated for two AL tasks: sampling the conformational space of glycine and sampling the promotion of proton transfer in acetylacetone. The method is shown to efficiently explore the chemically relevant configuration space, which may be inaccessible using regular dynamical sampling at target temperature conditions.
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Cites
Long-range corrected hybrid density functionals with damped atom–atom dispersion corrections
Chai, J.-D., & Head-Gordon, M. (2008) · Physical Chemistry Chemical Physics · doi:10.1039/b810189b · Cited by 14,648
Laio, A., & Parrinello, M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.202427399 · Cited by 5,626
Generalized Neural-Network Representation of High-Dimensional Potential-Energy Surfaces
Behler, J., & Parrinello, M. (2007) · Physical Review Letters · doi:10.1103/physrevlett.98.146401 · Cited by 5,010
Machine learning for molecular and materials science
Butler, K. T., Davies, D. W., Cartwright, H., Isayev, O., & Walsh, A. (2018) · Nature · doi:10.1038/s41586-018-0337-2 · Cited by 4,968
SchNet – A deep learning architecture for molecules and materials
Schütt, K. T., Sauceda, H. E., Kindermans, P.-J., Tkatchenko, A., & Müller, K.-R. (2018) · The Journal of Chemical Physics · doi:10.1063/1.5019779 · Cited by 2,217
ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost
Smith, J. S., Isayev, O., & Roitberg, A. E. (2017) · Chemical Science · doi:10.1039/c6sc05720a · Cited by 1,921
Self-citationCombining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems
Keith, J. A., Vassilev-Galindo, V., Cheng, B., Chmiela, S., Gastegger, M., Müller, K.-R., & Tkatchenko, A. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00107 · Cited by 849
Less is more: Sampling chemical space with active learning
Smith, J. S., Nebgen, B., Lubbers, N., Isayev, O., & Roitberg, A. E. (2018) · The Journal of Chemical Physics · doi:10.1063/1.5023802 · Cited by 811
Self-citationMachine learning molecular dynamics for the simulation of infrared spectra
Gastegger, M., Behler, J., & Marquetand, P. (2017) · Chemical Science · doi:10.1039/c7sc02267k · Cited by 556
Metadata
- Authors
- Kulichenko, M., Barros, K., Lubbers, N., Li, Y. W., Messerly, R., Tretiak, S., Smith, J. S., & Nebgen, B.
- Venue
- Nature Computational Science
- Published
- 2023-03-06
- Volume
- 3
- Issue
- 3
- Pages
- 230-239
- ISSN
- 2662-8457 (ISSN-L)
- OpenAlex
- W4323320070
- Cited by
- 159
- References
- 9
- FWCI
- 11.19
- Type
- journal article
- Language
- en
- Open access
- hybrid
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