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Structure of the Keap1:Nrf2 interface provides mechanistic insight into Nrf2 signaling
Open accessAbstract
Keap1 is a BTB-Kelch substrate adaptor protein that regulates steady-state levels of Nrf2, a bZIP transcription factor, in response to oxidative stress. We have determined the structure of the Kelch domain of Keap1 bound to a 16-mer peptide from Nrf2 containing a highly conserved DxETGE motif. The Nrf2 peptide contains two short antiparallel beta-strands connected by two overlapping type I beta-turns stabilized by the aspartate and threonine residues. The beta-turn region fits into a binding pocket on the top face of the Kelch domain and the glutamate residues form multiple hydrogen bonds with highly conserved residues in Keap1. Mutagenesis experiments confirmed the role of individual amino acids for binding of Nrf2 to Keap1 and for Keap1-mediated repression of Nrf2-dependent gene expression. Our results provide a detailed picture of how a BTB-Kelch substrate adaptor protein binds to its cognate substrate and will enable the rational design of novel chemopreventive agents.
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“Crystal structures of peptide substrate complexes have been reported for four BTB-Kelch family members, including KEAP1, KLHL2, KLHL3 and KLHL20 (refs 80,81,82 ).”
From Targeted protein degradation: expanding the toolbox (2019) · cites this paper as [80]
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“Ser363 and Asn414 Arg415 (2) Tyr334 and Tyr525 Gly364, Arg380, Gly462, Arg483, Ser508, Gly509, Gln530, Ser555, Ala556, Tyr572, Phe577, Ser602, and Gly603”
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PXDesign: Fast, Modular, and Accurate De Novo Design of Protein BindersPreprint
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NRF2 Dysregulation and Therapeutic Insights Across Chronic Kidney Diseases
Lim, T. S. T., Ng, K. H., & Zhang, Y. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26157471 · Cited by 14
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“Both the higher affinity ETGE peptide motif (protein data bank [PDB]: 2FLU) and the lower affinity DLG peptide motif (PDB: 2DYH) bind in the central cavity of the Kelch domain and interact with serine, arginine, and tyrosine side chains [13,14].”
BackgroundComputational analysis of protein–protein interactions of cancer drivers in renal cell carcinoma
Pei, J., Zhang, J., & Cong, Q. (2023) · FEBS Open Bio · doi:10.1002/2211-5463.13732 · Cited by 11
“NRF2 utilizes two small SLiMs in disordered regions (residues 17 – 40 and residues 69 – 84) to interact with the beta-propeller domain of KEAP1 [68,69].”
BackgroundLiu, C., An, H.-X., & Liu, A. (2023) · Food Bioscience · doi:10.1016/j.fbio.2023.103448 · Cited by 11
Owumi, S. E., Oluwawibe, B. J., Chimezie, J., Babalola, J. O., Ogunyemi, O. M., Gyebi, G. A., Otunla, M. T., Altayyar, A., Arunsi, U. O., Irozuru, C. E., et al. (2024) · BMC Pharmacology and Toxicology · doi:10.1186/s40360-024-00812-z · Cited by 11
Targeted substrate degradation by Kelch controls the actin cytoskeleton during ring canal expansion
Hudson, A. M., Mannix, K. M., Gerdes, J. A., Kottemann, M. C., & Cooley, L. (2018) · Development · doi:10.1242/dev.169219 · Cited by 11
“In contrast, Keap1, a more distantly related BBK protein, targets its substrate Nrf2 for ubiquitylation through a high-affinity interaction with a short DxETGE sequence (Lo et al., 2006).”
BackgroundAn, Y., Li, H., Wang, M., Xia, Z., Ding, L., & Xia, X. (2022) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2022.113378 · Cited by 11
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Isolation, identification and activity analysis of antioxidant peptides from rice wine lees
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Ávila‐Román, J., Quevedo-Tinoco, L., Oliveros-Ortiz, A. J., García-Gil, S., Rodríguez‐García, G., Motilva, V., Gómez‐Hurtado, M. A., & Talero, E. (2024) · Pharmaceuticals · doi:10.3390/ph17101388 · Cited by 10
“Chemical shift ( δ ) values are expressed”
BackgroundCovalent Inhibitors of KEAP1 with Exquisite Selectivity
Fejes, I., Markacz, P., Tatai, J., Rudas, M., Dunkel, P., Gyuris, M., Nyerges, M., Provost, N., Duvivier, V., Delerive, P., et al. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.4c02019 · Cited by 10
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Structural basis of Nrf2 activation by flavonolignans from silymarin
Bello, M. (2022) · Journal of Molecular Graphics and Modelling · doi:10.1016/j.jmgm.2022.108393 · Cited by 10
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Metadata
- Authors
- Lo, S., Li, X., Henzl, M. T., Beamer, L. J., & Hannink, M.
- Affiliations
- University of Missouri (US)
- Corresponding author
- Beamer, Lesa J
- Hannink, Mark
- Venue
- The EMBO Journal
- Published
- 2006-08-03
- Volume
- 25
- Issue
- 15
- Pages
- 3605-3617
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC1538563
- OpenAlex
- W2141982524
- Cited by
- 604
- References
- 68
- Citations by year
- 2026: 66 · 2025: 66 · 2024: 44 · 2023: 48 · 2022: 47 · 2021: 36 · 2020: 35 · 2019: 23 · 2018: 22 · 2017: 21 · 2016: 25 · 2015: 25 · 2014: 22 · 2013: 34 · 2012: 22
- FWCI
- 4.63
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- The EMBO Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute (P50CA103130)
- National Center for Complementary and Integrative Health (AT003899, R01AT003899)
- Lawrence Berkeley National Laboratory
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics, phytochemicals, and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Keywords
- Keap1, Nrf2, Kelch domain, protein-protein interaction, beta-turn, oxidative stress response, chemoprevention, protein structure
- MeSH terms
- Kelch-Like ECH-Associated Protein 1, Amino Acid Sequence, Animals, Binding Sites, Cells, Cultured, Chlorocebus aethiops, Humans, Models, Molecular, Molecular Sequence Data, Phosphorylation, Protein Binding, Protein Conformation, Signal Transduction, Conserved Sequence, Protein Structure, Tertiary, Dimerization, COS Cells, Amino Acid Motifs, Intracellular Signaling Peptides and Proteins, NF-E2-Related Factor 2
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