Cited by 180Immune Response and InflammationRespiratory Support and MechanismsNF-κB Signaling Pathways

The DOI matches its Crossref record; the references it cites are not checked yet.

Unique Toll-Like Receptor 4 Activation by NAMPT/PBEF Induces NFκB Signaling and Inflammatory Lung Injury

Open access

Abstract

Ventilator-induced inflammatory lung injury (VILI) is mechanistically linked to increased NAMPT transcription and circulating levels of nicotinamide phosphoribosyl-transferase (NAMPT/PBEF). Although VILI severity is attenuated by reduced NAMPT/PBEF bioavailability, the precise contribution of NAMPT/PBEF and excessive mechanical stress to VILI pathobiology is unknown. We now report that NAMPT/PBEF induces lung NFκB transcriptional activities and inflammatory injury via direct ligation of Toll–like receptor 4 (TLR4). Computational analysis demonstrated that NAMPT/PBEF and MD-2, a TLR4-binding protein essential for LPS-induced TLR4 activation, share ~30% sequence identity and exhibit striking structural similarity in loop regions critical for MD-2-TLR4 binding. Unlike MD-2, whose TLR4 binding alone is insufficient to initiate TLR4 signaling, NAMPT/PBEF alone produces robust TLR4 activation, likely via a protruding region of NAMPT/PBEF (S402-N412) with structural similarity to LPS. The identification of this unique mode of TLR4 activation by NAMPT/PBEF advances the understanding of innate immunity responses as well as the untoward events associated with mechanical stress-induced lung inflammation.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/srep13135

Cites

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Pretreatment of macrophages with CCR5 and TLR4 blockers partially alleviates rhNAMPT-induced M2 polarization in macrophages.

    “In line with previous reports 70, 71, we pretreated macrophages with C-C chemokine receptor type 5 (CCR5) and Toll-like receptor 4 (TLR4) blockers, which indeed partially alleviated rhNAMPT-induced M2 polarization in macrophages (Figure S7).”

    From Nicotinamide phosphoribosyltransferase prompts bleomycin-induced pulmonary fibrosis by driving macrophage M2 polarization in mice (2024) · cites this paper as [71]

    The Results section (‘NAMPT/PBEF is a novel TLR4 agonist triggering NFκB activation’; page unavailable) reports that TLR4 blockers reduced recombinant NAMPT/PBEF-induced NFκB phosphorylation in human lung endothelial cells. It does not report CCR5 blockade or macrophage M2 polarization. The citing sentence presents the M2 result as the citing authors’ own Figure S7 finding, so this source supports the TLR4 rationale, not that result. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

The citation lists haven’t been fetched yet

References 60 · Cited by 180

Research works printed but not linked: 49

  1. Ranieri, V. M. et al. Acute respiratory distress syndrome: the Berlin Definition. JAMA 307, 2526–2533 (2012).
  2. Rubenfeld, G. D. et al. Incidence and outcomes of acute lung injury. N Engl J Med 353, 1685–1693 (2005). · DOI · Paper page
  3. Dreyfuss, D. & Saumon, G. Ventilator-induced lung injury: lessons from experimental studies. Am J Respir Crit Care Med 157, 294–323 (1998). · DOI
  4. Parker, J. C., Hernandez, L. A. & Peevy, K. J. Mechanisms of ventilator-induced lung injury. Crit Care Med 21, 131–143 (1993). · DOI
  5. Grigoryev, D. N., Finigan, J. H., Hassoun, P. & Garcia, J. G. Science review: searching for gene candidates in acute lung injury. Crit Care 8, 440–447 (2004). · DOI
  6. Grigoryev, D. N. et al. Orthologous gene-expression profiling in multi-species models: search for candidate genes. Genome Biol 5, R34 (2004). · DOI
  7. Nonas, S. A. et al. Use of consomic rats for genomic insights into ventilator-associated lung injury. Am J Physiol Lung Cell Mol Physiol 293, L292–302 (2007). · DOI
  8. Simon, B. A. et al. Microarray analysis of regional cellular responses to local mechanical stress in acute lung injury. Am J Physiol Lung Cell Mol Physiol 291, L851–861 (2006). · DOI
  9. Ye, S. Q. et al. Pre-B-cell colony-enhancing factor as a potential novel biomarker in acute lung injury. Am J Respir Crit Care Med 171, 361–370 (2005). · DOI
  10. Bajwa, E. K. et al. Biomarker evidence of myocardial cell injury is associated with mortality in acute respiratory distress syndrome. Crit Care Med 35, 2484–2490 (2007). · DOI
  11. Hong, S. B. et al. Essential role of pre-B-cell colony enhancing factor in ventilator-induced lung injury. Am J Respir Crit Care Med 178, 605–617 (2008). · DOI
  12. Revollo, J. R., Grimm, A. A. & Imai, S. The regulation of nicotinamide adenine dinucleotide biosynthesis by Nampt/PBEF/visfatin in mammals. Curr Opin Gastroenterol 23, 164–170 (2007). · DOI
  13. Tanaka, T. & Nabeshima, Y. Nampt/PBEF/Visfatin: a new player in beta cell physiology and in metabolic diseases? Cell Metab 6, 341–343 (2007). · DOI
  14. Brentano, F. et al. Pre-B cell colony-enhancing factor/visfatin, a new marker of inflammation in rheumatoid arthritis with proinflammatory and matrix-degrading activities. Arthritis Rheum 56, 2829–2839 (2007). · DOI
  15. Marvin, K. W., Keelan, J. A., Eykholt, R. L., Sato, T. A. & Mitchell, M. D. Use of cDNA arrays to generate differential expression profiles for inflammatory genes in human gestational membranes delivered at term and preterm. Mol Hum Reprod 8, 399–408 (2002). · DOI
  16. Ognjanovic, S. & Bryant-Greenwood, G. D. Pre-B-cell colony-enhancing factor, a novel cytokine of human fetal membranes. Am J Obstet Gynecol 187, 1051–1058 (2002). · DOI
  17. Kim, M. K. et al. Crystal structure of visfatin/pre-B cell colony-enhancing factor 1/nicotinamide phosphoribosyltransferase, free and in complex with the anti-cancer agent FK-866. J Mol Biol 362, 66–77 (2006). · DOI
  18. Kim, H. M. et al. Crystal structure of the TLR4-MD-2 complex with bound endotoxin antagonist Eritoran. Cell 130, 906–917 (2007). · DOI
  19. Ohto, U., Fukase, K., Miyake, K. & Satow, Y. Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa. Science 316, 1632–1634 (2007). · DOI
  20. Dundas, J., Adamian, L. & Liang, J. Structural signatures of enzyme binding pockets from order-independent surface alignment: a study of metalloendopeptidase and NAD binding proteins. J Mol Biol 406, 713–729 (2011). · DOI
  21. Ohto, U., Miyake, K. & Shimizu, T. Crystal structures of mouse and human RP105/MD-1 complexes reveal unique dimer organization of the toll-like receptor family. J Mol Biol 413, 815–825 (2011). · DOI
  22. Deng, Y. et al. Toll-like receptor 4 mediates acute lung injury induced by high mobility group box-1. PLoS One 8, e64375 (2013). · DOI
  23. Trompette, A. et al. Allergenicity resulting from functional mimicry of a Toll-like receptor complex protein. Nature 457, 585–588 (2009). · DOI
  24. Yang, H. et al. A critical cysteine is required for HMGB1 binding to Toll-like receptor 4 and activation of macrophage cytokine release. Proc Natl Acad Sci USA 107, 11942–11947 (2010). · DOI
  25. Gruber, A., Mancek, M., Wagner, H., Kirschning, C. J. & Jerala, R. Structural model of MD-2 and functional role of its basic amino acid clusters involved in cellular lipopolysaccharide recognition. J Biol Chem 279, 28475–28482 (2004). · DOI
  26. Dundas, J., Binkowski, T. A., DasGupta, B. & Liang, J. Topology independent protein structural alignment. BMC Bioinformatics 8, 388 (2007). · DOI
  27. Wang, T. et al. Structure of Nampt/PBEF/visfatin, a mammalian NAD+ biosynthetic enzyme. Nat Struct Mol Biol 13, 661–662 (2006). · DOI
  28. Beiser, D. G. et al. Plasma and myocardial visfatin expression changes are associated with therapeutic hypothermia protection during murine hemorrhagic shock/resuscitation. Resuscitation 81, 742–748 (2010). · DOI
  29. Nichols, J., Evans, E. P. & Smith, A. G. Establishment of germ-line-competent embryonic stem (ES) cells using differentiation inhibiting activity. Development 110, 1341–1348 (1990). · DOI
  30. Sun, X. et al. The NAMPT Promoter is Regulated by Mechanical Stress, STAT5 and ARDS-Associated Genetic Variants. Am J Respir Cell Mol Bio 51, 660–667 (2014). · DOI
  31. Adyshev, D. M. et al. Mechanical stress induces pre-B-cell colony-enhancing factor/NAMPT expression via epigenetic regulation by miR-374a and miR-568 in human lung endothelium. Am J Respir Cell Mol Bio 50, 409–418 (2014). · DOI
  32. Liu, P. et al. Critical role of PBEF expression in pulmonary cell inflammation and permeability. Cell Biol Int 33, 19–30 (2009). · DOI
  33. Nowell, M. A. et al. Regulation of pre-B cell colony-enhancing factor by STAT-3-dependent interleukin-6 trans-signaling: implications in the pathogenesis of rheumatoid arthritis. Arthritis Rheum 54, 2084–2095 (2006). · DOI
  34. Otero, M. et al. Changes in plasma levels of fat-derived hormones adiponectin, leptin, resistin and visfatin in patients with rheumatoid arthritis. Ann Rheum Dis 65, 1198–1201 (2006). · DOI
  35. Pillai, V. B. et al. Nampt secreted from cardiomyocytes promotes development of cardiac hypertrophy and adverse ventricular remodeling. Am J Physiol Heart Circ Physiol 304, H415–426 (2013). · DOI · Paper page
  36. Takeda, K. & Akira, S. Toll-like receptors. Curr Protoc Immunol Chapter 14, Unit 14 12 (2007).
  37. Huang, D., Fang, F. & Xu, F. The role of expression of Toll-like receptor 2 and Toll-like receptor 4 in hyperoxia-induced acute lung injury in rat. Zhongguo Wei Zhong Bing Ji Jiu Yi Xue 21, 644–647 (2009).
  38. Takeda, K. & Akira, S. TLR signaling pathways. Semin Immunol 16, 3–9 (2004). · DOI
  39. Kim, J. I. et al. Crystal structure of CD14 and its implications for lipopolysaccharide signaling. J Biol Chem 280, 11347–11351 (2005). · DOI
  40. Wang, H. et al. HMG-1 as a late mediator of endotoxin lethality in mice. Science 285, 248–251 (1999). · DOI
  41. Yang, H., Antoine, D. J., Andersson, U. & Tracey, K. J. The many faces of HMGB1: molecular structure-functional activity in inflammation, apoptosis and chemotaxis. J Leukoc Biol 93, 865–873 (2013). · DOI · Paper page
  42. Yang, H. et al. Redox modification of cysteine residues regulates the cytokine activity of high mobility group box-1 (HMGB1). Mol Med 18, 250–259 (2012). · DOI · Paper page
  43. Derewenda, U. et al. The crystal structure of a major dust mite allergen Der p 2 and its biological implications. J Mol Biol 318, 189–197 (2002). · DOI
  44. Inohara, N. & Nunez, G. ML – a conserved domain involved in innate immunity and lipid metabolism. Trends Biochem Sci 27, 219–221 (2002). · DOI
  45. Dudek, S. M. et al. Pulmonary endothelial cell barrier enhancement by sphingosine 1-phosphate: roles for cortactin and myosin light chain kinase. J Biol Chem 279, 24692–24700 (2004). · DOI
  46. Sammani, S. et al. Differential effects of sphingosine 1-phosphate receptors on airway and vascular barrier function in the murine lung. Am J Respir Cell Mol Bio 43, 394–402 (2010). · DOI
  47. Wu, Z., Irizarry, R. A., Gentleman, R., Martinez-Murillo, F. & Spenser, F. A model-based background adjustment for oligonucleotide expression arrays. J Am Statist Assoc 99, 909–917 (2004). · DOI
  48. Carvalho, B. S. & Irizarry, R. A. A framework for oligonucleotide microarray preprocessing. Bioinformatics 26, 2363–2367 (2010). · DOI
  49. Tusher, V. G., Tibshirani, R. & Chu, G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98, 5116–5121 (2001). · DOI · Paper page

Metadata

Authors
Camp, S. M., Ceco, E., Evenoski, C. L., Danilov, S. M., Zhou, T., Chiang, E. T., Moreno-Vinasco, L., Mapes, B., Zhao, J., Gursoy, G., Brown, M. E., Adyshev, D. M., Siddiqui, S. S., Quijada, H., Sammani, S., Letsiou, E., Saadat, L., Yousef, M., Wang, T., Liang, J., & Garcia, J. G. N.
Affiliations
  • University of Arizona (US)
  • University of Illinois Chicago (US)
  • Bio-Rad (United States) (US)
Corresponding author
Garcia, Joe G. N.
Venue
Scientific Reports
Published
2015-08-14
Volume
5
Issue
1
Pages
13135-13135
ISSN
2045-2322 (ISSN-L)
OpenAlex
W2396343210
Cited by
180
References
60
Citations by year
2026: 14 · 2025: 17 · 2024: 21 · 2023: 18 · 2022: 29 · 2021: 18 · 2020: 24 · 2019: 15 · 2018: 11 · 2017: 8 · 2016: 5
FWCI
3.94
Type
journal article
Language
en
Open access
Locations
  • Scientific Reports (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
  • National Science Foundation (1062328)
  • National Institutes of Health (5p50hl073994-05)
  • National Heart, Lung, and Blood Institute (P50 HL-073994, R01-HL73994, T32HL076139)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
  • Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Respiratory Support and Mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › NF-κB Signaling Pathways
Keywords
TLR4, MD-2, NF-κB signaling, mechanical stress, innate immunity, lung inflammation, visfatin
MeSH terms
Animals, Binding Sites, Cells, Cultured, Humans, Mice, Inbred C57BL, Models, Chemical, Pneumonia, Protein Binding, Protein Conformation, Cytokines, NF-kappa B, Mice, Knockout, Toll-Like Receptor 4, Mice, Nicotinamide Phosphoribosyltransferase, Ventilator-Induced Lung Injury, Molecular Docking Simulation

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review