A computational and experimental study of O-glycosylation. Catalysis by human UDP-GalNAc polypeptide:GalNAc transferase-T2
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GalNAc-T2 catalyses GalNAc O-glycosylation via a front-side nucleophilic attack in which stabilization of the UDP leaving group is crucial.
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UDP-galactose has been postulated as an alternative sugar substrate for GalNAc-T2.
“Although UDP-galactose has been postulated as an alternative sugar substrate for GalNAc-T2 [21, 30], no sugar moieties attached to T7Muc10, which correlate with galactose residues were detected.”
From High level in vivo mucin-type glycosylation in Escherichia coli (2018) · cites this paper as [30]
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Cites
Schjoldager, K. T.-B. G., & Clausen, H. (2012) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2012.09.014 · Cited by 193 · see citing works
Fritz, T. A., Raman, J., & Tabak, L. A. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m513590200 · Cited by 163 · see citing works
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Research works printed but not linked: 48
- [1]Jentoft N Trends Biochem Sci 1990 15 291 2204153
- [2]Moody AM Chui D Reche PA Priatel JJ Marth JD Reinherz EL Cell 2001 107 501 11719190
- [3]Xu Z Weiss A Nat Immunol 2002 3 764 12134145
- [4]Sauer J Sigurskjold BW Christensen U Frandsen TP Mirgorodskaya E Harrison M Roepstorff P Svensson B Biochim Biophys Acta 2000 1543 275 11150611
- [5]Garner B Merry AH Royle L Harvey DJ Rudd PM Thillet J J Biol Chem 2001 276 22200 11294842
- [6]Hooper LV Gordon JI Glycobiology 2001 11 1R 11287395
- [7]Yeh JC Hiraoka N Petryniak B Nakayama J Ellies LG Rabuka D Hindsgaul O Marth JD Lowe JB Fukuda M Cell 2001 105 957 11439191
- [8]Somers WS Tang J Shaw GD Camphausen RT Cell 2000 103 467 11081633
- [9]Alfalah M Jacob R Preuss U Zimmer KP Naim H Naim HY Curr Biol 1999 9 593 10359703
- [10]Altschuler Y Kinlough CL Poland PA Bruns JB Apodaca G Weisz OA Hughey RP Mol Biol Cell 2000 11 819 10712502 PMC14813
- [11]Breuza L Garcia M Delgrossi MHH Le Bivic A Exp Cell Res 2002 273 178 11822873
- [12]Naim HY Joberty G Alfalah M Jacob R J Biol Chem 1999 25 17961 10364244
- [13]Zheng X Sadler JE J Biol Chem 2002 277 6858 11878264
- [14]Schjoldager KTBG Clausen H Biochim Biophys Acta 2012 1820 2079 23022508
- [15]Ten Hagen KG Fritz TA Tabak LA Glycobiology 2003 13 1R 12634319
- [16]Strous GJ Proc Natl Acad Sci U S A 1979 76 2694 288057 PMC383674
- [17]Cantarel BL Coutinho PM Rancurel C Bernard T Lombard V Henrissat B Nucleic Acids Res 2009 37 D233 18838391 PMC2686590
- [18]Lairson LL Henrissat B Davies GJ Withers SG Annu Rev Biochem 2008 77 521 18518825
- [19]Bottoni A Miscione GP De Vivo M Proteins: Struct, Funct, Bioinf 2005 59 118 15688446
- [20]Bowman AL Grant IM Mulholland AJ Chem Commun 2008 4425 18802578
- [22]Lairson LL Chiu CP Ly HD He S Wakarchuk WW Strynadka NC Withers SG J Biol Chem 2004 279 28339 15075344
- [23]Soya N Fang Y Palcic MM Klassen JS Glycobiology 2011 21 547 21098513
- [24]Gómez H Lluch JM Masgrau L J Am Chem Soc 2013 135 7053 23578032
- [25]Rojas-Cervellera V Ardèvol A Boero M Planas A Rovira C Chemistry 2013 19 14018 24108590
- [26]Tvaroška I Carbohydr Res 2004 339 1007 15010308
- [27]Errey JC Lee SS Gibson RP Martinez-Fleites C Barry CS Jung PM O’Sullivan AC Davis BG Davies GJ Angew Chem, Int Ed 2010 49 1234 20077550
- [28]Lee SS Hong SY Errey JC Izumi A Davies GJ Davis BG Nat Chem Biol 2011 7 631 21822275
- [29]Ardèvol A Rovira C Angew Chem, Int Ed 2011 50 10897 21953735
- [30]Gómez H Polyak I Thiel W Lluch JM Masgrau L J Am Chem Soc 2012 134 4743 22352786
- [31]Gómez H Lluch JM Masgrau L Carbohydr Res 2012 356 204 22520506
- [32]Schuman B Evans SV Fyles TM PLoS One 2013 8 e71077 23936487 PMC3731257
- [33]Milac AL Buchete NV Fritz TA Hummer G Tabak LA J Mol Biol 2007 373 439 17850816 PMC2100437
- [34]Fritz TA Raman J Tabak LA J Biol Chem 2006 281 8613 16434399
- [35]Kubota T Shiba T Sugioka S Furukawa S Sawaki H Kato R Wakatsuki S Narimatsu H J Mol Biol 2006 359 708 16650853
- [37]Elhammer A Kornfeld S J Biol Chem 1986 261 5249 3082881
- [43]MacKerell AD Bashford D Bellott M Dunbrack RL Evanseck JD Field MJ Fischer S Gao J Guo H Ha S Joseph-McCarthy D Kuchnir L Kuczera K Lau FTK Mattos C Michnick S Ngo T Nguyen DT Prodhom B Reiher WE Roux B Schlenkrich M Smith JC Stote R Straub J Watanabe M Wiórkiewicz-Kuczera J Yin D Karplus M J Phys Chem B 1998 102 3586 24889800
- [44]MacKerell AD Feig M Brooks CL J Am Chem Soc 2004 126 698 14733527
- [48]Becke AD Phys Rev A 1988 38 3098 9900728
- [50]Perdew JP Phys Rev B: Condens Matter 1986 33 8822 9938299
- [52]Zhao Y Schultz NE Truhlar DG J Chem Theory Comput 2006 2 364 26626525
- [57]Lee CT Yang WT Parr RG Phys Rev B: Condens Matter 1988 37 785 9944570
- [66]Smith W Forester TR J Mol Graphics 1996 14 136 8901641
- [72]Vocadlo DJ Whiters SG Biochemistry 2005 44 12809 16171396
- [73]Tvaroška I Kozmon S Wimmerová M Koča J J Am Chem Soc 2012 134 15563 22928765
- [74]Wandall HH Hassan H Mirgorodskaya E Kristensen AK Roepstorff P Bennett EP Nielsen PA Hollingsworth MA Burchell J Taylor-Papadimitriou J Clausen H J Biol Chem 1997 272 23503 9295285
- [75]Jamaluddin H Tumbale P Withers SG Acharya KR Brew K J Mol Biol 2007 369 1270 17493636
- [76]Wragg S Hagen FK Tabak LA J Biol Chem 1995 270 16947 7622513
- [77]Hagen FK Hazes B Raffo R deSa D Tabak LA J Biol Chem 1999 274 6797 10037781
Cited by
Sorted by citations
High level in vivo mucin-type glycosylation in Escherichia coli
Mueller, P., Gauttam, R., Raab, N., Handrick, R., Wahl, C., Leptihn, S., Zorn, M., Kussmaul, M., Scheffold, M., Eikmanns, B., et al. (2018) · Microbial Cell Factories · doi:10.1186/s12934-018-1013-9 · Cited by 22 · see citing works
- Authors
- Gómez, H., Rojas, R., Patel, D., Tabak, L. A., Lluch, J. M., & Masgrau, L.
- Affiliations
- Universitat Autònoma de Barcelona (ES)
- National Institutes of Health (US)
- Corresponding author
- Tabak, Lawrence A.
- Masgrau, Laura
- Venue
- Org. Biomol. Chem.
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2014
- Volume
- 12
- Issue
- 17
- Pages
- 2645-2655
- ISSN
- 1477-0520 (ISSN-L)
- 1477-0539
- PMC
- PMC4744471
- OpenAlex
- W2080780084
- Cited by
- 41
- References
- 2
- Citations by year
- 2025: 2 · 2024: 1 · 2022: 3 · 2021: 5 · 2020: 1 · 2019: 2 · 2018: 2 · 2017: 4 · 2016: 8 · 2015: 6 · 2014: 7
- FWCI
- 3.41
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Organic & Biomolecular Chemistry (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Generalitat de Catalunya
- Ministerio de Economía y Competitividad
- National Institutes of Health
- National Institute of Dental and Craniofacial Research (ZIADE000739)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Reaction Mechanisms
- Keywords
- O-glycosylation, mucin-type O-glycans, QM/MM calculations, enzyme mechanism, transition state stabilization, site-directed mutagenesis, glycosyltransferase substrate specificity
- MeSH terms
- Polypeptide N-acetylgalactosaminyltransferase, Catalysis, Glycosylation, Humans, Hydrogen Bonding, Kinetics, Models, Molecular, Mucins, Polysaccharides, Protein Conformation, Quantum Theory, Substrate Specificity, Uridine Diphosphate, N-Acetylgalactosaminyltransferases, Computational Biology
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