Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach
Open accessAbstract
Living cells are able to produce a wide variety of biological responses when subjected to biochemical stimuli.
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Equilibrium disruption by cyclic recursive processes is the most promising way to assemble chemical systems in the out-of-equilibrium dynamic state that characterizes biological phenomena.
“Indeed, equilibrium disruption by cyclic (recursive) processes is the most promising way to assemble chemical systems in the out-of-equilibrium dynamic state that characterizes biological phenomena.54,55”
From The protometabolic nature of prebiotic chemistry (2023) · cites this paper as [54]
Cites
Programmable on-chip DNA compartments as artificial cells
Karzbrun, E., Tayar, A. M., Noireaux, V., & Bar-Ziv, R. H. (2014) · Science · doi:10.1126/science.1255550 · Cited by 264 · see citing works
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Song, T., Eshra, A., Shah, S., Bui, H., Fu, D., Yang, M., Mokhtar, R., & Reif, J. (2019) · Nature Nanotechnology · doi:10.1038/s41565-019-0544-5 · Cited by 240 · see citing works
The protometabolic nature of prebiotic chemistry
Nogal, N., Sanz-Sánchez, M., Vela-Gallego, S., Ruiz-Mirazo, K., & de la Escosura, A. (2023) · Chemical Society Reviews · doi:10.1039/d3cs00594a · Cited by 61 · see citing works
- Authors
- van Roekel, H. W. H., Rosier, B. J. H. M., Meijer, L. H. H., Hilbers, P. A. J., Markvoort, A. J., Huck, W. T. S., & de Greef, T. F. A.
- Affiliations
- Institute for Complex Molecular Systems, Eindhoven University of Technology, P. O. Box 513, 5600 MB Eindhoven, The Netherlands
- Eindhoven University of Technology (NL)
- Radboud University Nijmegen (NL)
- Corresponding author
- Markvoort, Albert J.
- Huck, Wilhelm T. S.
- Venue
- Chemical Society Reviews
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2015
- Volume
- 44
- Issue
- 21
- Pages
- 7465-7483
- ISSN
- 0306-0012 (ISSN-L)
- 1460-4744
- OpenAlex
- W2137772471
- Cited by
- 171
- References
- 1
- Citations by year
- 2026: 13 · 2025: 16 · 2024: 17 · 2023: 12 · 2022: 18 · 2021: 16 · 2020: 15 · 2019: 19 · 2018: 16 · 2017: 18 · 2016: 8 · 2015: 3
- FWCI
- 1.45
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Chemical Society Reviews (publishedVersion, cc-by)
- PubMed (publishedVersion)
- TU/e Research Portal (submittedVersion)
- TU/e Research Portal (submittedVersion, other-oa)
- Radboud Repository (Radboud University) (submittedVersion)
- Radboud Repository (Radboud University) (submittedVersion, other-oa)
- Funders
- Technische Universiteit Eindhoven
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (717.013.001, 024001035, Gravity Program 024.001.035, 722.012.0001)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Physical Sciences › Computer Science › Computer Networks and Communications › Nonlinear Dynamics and Pattern Formation
- Keywords
- chemical reaction networks, bottom-up synthetic biology, oscillations, pattern formation, molecular logic
- MeSH terms
- Models, Biological, Urea, Urease, Signal Transduction, Transcriptional Activation, Bioengineering
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