The DOI matches its Crossref record; 18 of the 18 references it cites were found in a registry or an index.
Hydroxyapatite: catalyst for a one-pot pentose formation
Abstract
One of the possible synthetic routes to pentoses is the formose reaction pathway from C1 and C2 carbon sources, but preferential ribose generation in a one-pot reaction without any control of conditions has not been reported. We have tested a one-pot pentose formation and analyzed the products and mechanism in the reaction, using 1 H-NMR and mass spectrometry. Hydroxyapatite (HAp), which consists of phosphate and calcium ions, worked continuously for cross-aldol reactions and Lobry de Bruyn-van Ekenstein transformations to yield ribose from formaldehyde and glycolaldehyde. The continuous reaction proceeds in one pot in hot water only in the presence of a HAp catalyst, without any fine pH control or any complicated condition control at each reaction step. Ribose production by HAp may be a reason why a pentose backbone was incorporated into nucleic acids in the prebiotic world.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“On the contrary, hydroxyapatite enhances the cross-aldol Lobry de Bruyn-Alberda-van Eckstein reaction using the effective positioning of calcium ions on the surface of the minerals (Furukawa et al., 2015; Larralde et al., 1995; Usami and Okamoto, 2017) thus tetrose-2-4-diphosphate and hexose-2-4-6-triposphate are converted in ribose 5-phosphate.”
From The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments (2023) · cites this paper as Usami and Okamoto, 2017
Citations
Cites
Borate Minerals Stabilize Ribose
Ricardo, A., Carrigan, M. A., Olcott, A. N., & Benner, S. A. (2004) · Science · doi:10.1126/science.1092464 · Cited by 646
Cai, Y., Xue, F., Fleming, C., Yang, J., Ding, C., Ma, Y., Liu, M., Zhang, H., Zheng, J., Xiong, N., et al. (2016) · Nature Communications · doi:10.1038/ncomms11354 · Cited by 531
Significant precision in crystal structural details. Holly Springs hydroxyapatite
Sudarsanan, K., & Young, R. A. (1969) · Acta Crystallographica Section B · doi:10.1107/s0567740869004298 · Cited by 511
On the Mechanism of the Formose Reaction
Breslow, R. (1959) · Tetrahedron Letters · doi:10.1016/s0040-4039(01)99487-0 · Cited by 456
DETECTION OF THE SIMPLEST SUGAR, GLYCOLALDEHYDE, IN A SOLAR-TYPE PROTOSTAR WITH ALMA
Jørgensen, J. K., Favre, C., Bisschop, S. E., Bourke, T. L., van Dishoeck, E. F., & Schmalzl, M. (2012) · The Astrophysical Journal Letters · doi:10.1088/2041-8205/757/1/l4 · Cited by 283
Asphalt, Water, and the Prebiotic Synthesis of Ribose, Ribonucleosides, and RNA
Benner, S. A., Kim, H.-J., & Carrigan, M. A. (2012) · Accounts of Chemical Research · doi:10.1021/ar200332w · Cited by 281
Synthesis of Carbohydrates in Mineral-Guided Prebiotic Cycles
Kim, H.-J., Ricardo, A., Illangkoon, H. I., Kim, M. J., Carrigan, M. A., Frye, F., & Benner, S. A. (2011) · Journal of the American Chemical Society · doi:10.1021/ja201769f · Cited by 268
Bildung einer zuckerartigen Substanz durch Synthese
Butlerow, A. (1861) · Justus Liebigs Annalen der Chemie · doi:10.1002/jlac.18611200308 · Cited by 266
A High-Yielding, Strictly Regioselective Prebiotic Purine Nucleoside Formation Pathway
Becker, S., Thoma, I., Deutsch, A., Gehrke, T., Mayer, P., Zipse, H., & Carell, T. (2016) · Science · doi:10.1126/science.aad2808 · Cited by 238
Use of phosphate rocks for sustainable agriculture
Zapata, F., & Roy, R. (. ). (2004) · Cited by 195
Research works printed but not linked: 2
- Roux, 1989, J. South. Afr. Inst. Min. Metall., 89, 129
- Momma, 2006, Crystallogr. Comput., IUCr Newslett., 7, 106
Cited by
Sorted by citations
Unified Prebiotically Plausible Synthesis of Pyrimidine and Purine RNA Ribonucleotides
Becker, S., Feldmann, J., Wiedemann, S., Okamura, H., Schneider, C., Iwan, K., Crisp, A., Rossa, M., Amatov, T., & Carell, T. (2019) · Science · doi:10.1126/science.aax2747 · Cited by 306
Chemistry of Abiotic Nucleotide Synthesis
Yadav, M., Kumar, R., & Krishnamurthy, R. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.9b00546 · Cited by 225
An evaporite sequence from ancient brine recorded in Bennu samples
McCoy, T. J., Russell, S. S., Zega, T. J., Thomas-Keprta, K. L., Singerling, S. A., Brenker, F. E., Timms, N. E., Rickard, W. D. A., Barnes, J., Libourel, G., et al. (2025) · Nature · doi:10.1038/s41586-024-08495-6 · Cited by 96
Xu, J. P., Huang, W., Bai, R., Queneau, Y., Jérôme, F., & Gu, Y. (2019) · Green Chemistry · doi:10.1039/c8gc04000a · Cited by 66
Brasil, H., Bittencourt, A. F. B., Yokoo, K. C. E. S., Mendes, P. C. D., Verga, L. G., Andriani, K. F., Landers, R., Silva, J. L. F. D., & Valença, G. P. (2021) · Journal of Catalysis · doi:10.1016/j.jcat.2021.08.050 · Cited by 42
Upadhyay, P., & Ullah, A. (2023) · New Journal of Chemistry · doi:10.1039/d3nj01715j · Cited by 32
Dihydroxyacetone: A User Guide for a Challenging Bio-Based Synthon
Bricotte, L., Chougrani, K., Alard, V., Ladmiral, V., & Caillol, S. (2023) · Molecules · doi:10.3390/molecules28062724 · Cited by 30
Sutton, S. M., Pulletikurti, S., Lin, H., Krishnamurthy, R., & Liotta, C. L. (2025) · Chem · doi:10.1016/j.chempr.2025.102553 · Cited by 27
Hydroxyapatite-based materials as catalysts: A review
Kharissova, O. V., Méndez, Y. P., Kharisov, B. I., González, L. T., & Dorozhkin, S. V. (2024) · Particuology · doi:10.1016/j.partic.2024.11.007 · Cited by 26
Exploring the Emergence of RNA Nucleosides and Nucleotides on the Early Earth
Biscans, A. (2018) · Life · doi:10.3390/life8040057 · Cited by 25
Advanced Ceramics: Stages of Development
Zawrah, M. F., Taha, M. A., & Youness, R. A. (2023) · Advances in material research and technology · doi:10.1007/978-3-031-43918-6_1 · Cited by 22
The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments
Chieffo, C., Shvetsova, A., Skorda, F., Lopez, A., & Fiore, M. (2023) · Astrobiology · doi:10.1089/ast.2023.0007 · Cited by 21
Müller, W. E. G., Neufurth, M., Ushijima, H., Muñoz‐Espí, R., Müller, L.-K., Wang, S., Schröder, H. C., & Wang, X. (2022) · Dental Materials · doi:10.1016/j.dental.2022.11.013 · Cited by 21
Proto‐Urea‐RNA (Wöhler RNA) Containing Unusually Stable Urea Nucleosides
Okamura, H., Crisp, A. L., Hübner, S., Becker, S. M., Rovó, P., & Carell, T. (2019) · Angewandte Chemie International Edition · doi:10.1002/anie.201911746 · Cited by 20
Enhanced CO2 Conversion into Ethanol by Permanently Polarized Hydroxyapatite through C−C Coupling
Sans, J., Sanz, V., Turón, P., & Alemán, C. (2021) · ChemCatChem · doi:10.1002/cctc.202101157 · Cited by 19
Do Soluble Phosphates Direct the Formose Reaction towards Pentose Sugars?
Camprubí, E., Harrison, S. A., Jordan, S. F., Bonnel, J., Pinna, S., & Lane, N. J. (2022) · Astrobiology · doi:10.1089/ast.2021.0125 · Cited by 17
Bahadorikhalili, S., Arshadi, H., Afrouzandeh, Z., & Ma’mani, L. (2020) · New Journal of Chemistry · doi:10.1039/d0nj00829j · Cited by 16
Kajiyama, S., Iwase, H., Nakayama, M., Ichikawa, R., Yamaguchi, D., Seto, H., & Kato, T. (2020) · Nanoscale · doi:10.1039/c9nr10996j · Cited by 16
Proto‐Urea‐RNA (Wöhler RNA) Containing Unusually Stable Urea Nucleosides
Okamura, H., Crisp, A. L., Hübner, S., Becker, S. M., Rovó, P., & Carell, T. (2019) · Angewandte Chemie · doi:10.1002/ange.201911746 · Cited by 11
Prebiotic Synthesis of ATP: A Terrestrial Volcanism-Dependent Pathway
Chu, X., & Zhang, H. (2023) · Life · doi:10.3390/life13030731 · Cited by 11
The second wave of formose research
Hashidzume, A. (2025) · BBA Advances · doi:10.1016/j.bbadva.2025.100141 · Cited by 11
Hashemi, N., Vaezi, Z., Khanmohammadi, S., Sohi, A. N., Masoumi, S., Hruschka, V., Wolbank, S., Redl, H. R., Marolt, D., & Naderi‐Manesh, H. (2020) · Materials Science and Engineering C · doi:10.1016/j.msec.2020.110775 · Cited by 11
Tuning the c-Axis Orientation of Calcium Phosphate Hybrid Thin Films Using Polymer Templates
Ichikawa, R., Kajiyama, S., Iimura, M., & Kato, T. (2019) · Langmuir · doi:10.1021/acs.langmuir.8b04318 · Cited by 10
Hashidzume, A., Imai, T., Deguchi, N., Tanibayashi, T., Ikeda, T., Michitaka, T., Kuwahara, S., Nakahata, M., Kamon, Y., & Todokoro, Y. (2023) · RSC Advances · doi:10.1039/d2ra07249a · Cited by 10
Efficient Ketose Production by a Hydroxyapatite Catalyst in a Continuous Flow Module
Usami, K., Xiao, K., & Okamoto, A. (2018) · ACS Sustainable Chemistry & Engineering · doi:10.1021/acssuschemeng.8b05574 · Cited by 10
Self-citationSc(OTf)3-catalyzed synthesis of polysubstituted furans from acylacetonitriles and renewable acetol
Huang, W., Liu, F., Wang, K., Sidorenko, A. Y., Бей, М. П., Zhang, Z., Fang, W. H., Li, M., Gu, Y., & Ke, S. (2022) · Green Synthesis and Catalysis · doi:10.1016/j.gresc.2022.04.008 · Cited by 9
Metal–Organic Frameworks as Formose Reaction Catalysts with Enhanced Selectivity
Balloi, V., Díaz‐Pérez, M. A., Lara-Angulo, M. A., Villalgordo‐Hernández, D., Narciso, J., Ramos–Fernández, E. V., & Serrano‐Ruiz, J. C. (2023) · Molecules · doi:10.3390/molecules28166095 · Cited by 8
Enantioselective Abiotic Synthesis of Ribose on Chiral Mesostructured Hydroxyapatite
Zhang, W., Wang, Y., Ma, Y., Duan, Y., Zhang, W., Che, S., & Fang, Y. (2025) · Angewandte Chemie International Edition · doi:10.1002/anie.202425581 · Cited by 8
Environmental History is Transferred via Minerals Altering Formose Reaction Pathways
de Jong, T. J., Demertzi, A. D., Robinson, W. E., & Huck, W. T. S. (2025) · Angewandte Chemie International Edition · doi:10.1002/anie.202504659 · Cited by 7
Byra, N., Krukowski, S., Sadło, J., & Kołodziejski, W. (2022) · Materials · doi:10.3390/ma15062043 · Cited by 7
Arifin, A., Gunawan, G., Priyadi, A., & Sanjaya, F. A. (2020) · IOP Conference Series Materials Science and Engineering · doi:10.1088/1757-899x/857/1/012005 · Cited by 6
Saccharide formation by sustainable formose reaction using heterogeneous zeolite catalysts
Waki, M., Shirai, S., & Hase, Y. M. (2024) · Dalton Transactions · doi:10.1039/d3dt02321d · Cited by 6
Overview of Some Production Routes for Hydroxyapatite and Its Applications
Ibrahim, M., Youness, R. A., & Taha, M. A. (2024) · Advances in material research and technology · doi:10.1007/978-3-031-49175-7_6 · Cited by 6
Environmental History is Transferred via Minerals Altering Formose Reaction Pathways
de Jong, T. J., Demertzi, A. D., Robinson, W. E., & Huck, W. T. S. (2025) · Angewandte Chemie · doi:10.1002/ange.202504659 · Cited by 3
A selective non-enzymatic synthesis of ribose simply from formaldehyde, metal salts and clays
Xu, H.-X., Zhao, Z.-R., & Wang, X. (2024) · Chemical Communications · doi:10.1039/d4cc03981e · Cited by 2
Reactions of Aldehydes and Ketones and their Derivatives
Hussaini, S. R. (2020) · Organic Reaction Mechanisms/Organic reaction mechanisms · doi:10.1002/9781119426295.ch1 · Cited by 2
The Origin and Early Evolution of Life: Prebiotic Chemistry of Biomolecules
Fiore, M. (2019) · MDPI eBooks · doi:10.3390/books978-3-03921-607-9 · Cited by 2
Hydroxyapatite‐Based Catalysts: Influence of the Molar Ratio of Ca to P
Ma, Z. (2022) · Wiley eBooks · doi:10.1002/9783527830190.ch4 · Cited by 2
Nucleic Acids in Green Chemistry
Okamoto, A. (2023) · Springer eBooks · doi:10.1007/978-981-19-9776-1_80 · Cited by 1
Self-citationPossible Enantioseparation of Racemic Ribose on Chiral Surface Formed by Adsorption of Nucleobases
Bielski, R., & Tencer, M. (2025) · Life · doi:10.3390/life15081160 · Cited by 1
Kang, P., Gabrijelčič, M., Krajnc, A., Likozar, B., & Sharma, R. K. (2026) · ChemSusChem · doi:10.1002/cssc.70834 · Cited by 1
Characterization Porous HA/SiO2 Composite Prepared Using Natural Space Holder
Arifin, A., Gunawan, G., Amin, M., Mardhi, A., Trycahyono, G., & Burlian, F. (2021) · Lecture notes in mechanical engineering · doi:10.1007/978-981-16-4115-2_22 · Cited by 1
Inorganic Phosphate: The Backbone of Life
MUSTAEV, A. A. (2023) · IntechOpen eBooks · doi:10.5772/intechopen.109117 · Cited by 1
Fadli, A. (2025) · Ceramics - Silikaty · doi:10.13168/cs.2025.0003 · Cited by 1
Multilayered substructures of a non-enzymatic chemical reaction network for synthesizing sugars
Chikatani, G., Nishijima, H., Ito, Y., Ikuta, T., Nagita, K., Tabata, H., Harada, T., Miyake, R., Nakanishi, S., & Hase, Y. M. (2025) · Communications Chemistry · doi:10.1038/s42004-025-01560-9 · Cited by 1
Biosynthesis of nano-inorganic materials by urease and phosphatase positive probiotic bacteriaPreprint
Nouri, S., Roghanian, R., Emtiazi, G., & Shafiei, R. (2022) · Research Square · doi:10.21203/rs.3.rs-1688539/v1 · Cited by 1
Turón, P. (2019) · UPCommons institutional repository (Universitat Politècnica de Catalunya) · doi:10.5821/dissertation-2117-176431
Nucleic Acids in Green Chemistry
Okamoto, A. (2022) · Springer eBooks · doi:10.1007/978-981-16-1313-5_80-1
Self-citationVelu, B. A., Thirunarayanan, G., Muthuvel, I., Kumar, A., & Kulanthaivel, S. (2023) · Materials Today Proceedings · doi:10.1016/j.matpr.2023.07.223
Enantioselective Abiotic Synthesis of Ribose on Chiral Mesostructured Hydroxyapatite
Zhang, W., Wang, Y., Ma, Y., Duan, Y., Zhang, W., Che, S., & Fang, Y. (2025) · Angewandte Chemie · doi:10.1002/ange.202425581
Kuryviálová, I. (2023) · Digitální knihovna Univerzity Pardubice (Univerzity Pardubice)
The Formose Reaction with SO2: A Computational Study
Sisson, E. M., & Kua, J. (2026) · Life · doi:10.3390/life16030513
Phosphorylation of prebiotic precursors on the early Earth
Shvetsova, A. (2023) · theses.fr (ABES) · doi:10.70675/f29e48aezf058z4ca4za37czb7fc87d89620
Metadata
- Authors
- Usami, K., & Okamoto, A.
- Affiliations
- The University of Tokyo (JP)
- Research Center for Advanced Science and Technology, The University of Tokyo (JP)
- Corresponding author
- Okamoto, A.
- ORCID
- Okamoto, A.
- Venue
- Organic & Biomolecular Chemistry
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2017
- Volume
- 15
- Issue
- 42
- Pages
- 8888-8893
- ISSN
- 1477-0520 (ISSN-L)
- 1477-0539
- OpenAlex
- W2760693987
- Cited by
- 53
- References
- 18
- Citations by year
- 2026: 2 · 2025: 10 · 2024: 4 · 2023: 11 · 2022: 8 · 2021: 3 · 2020: 6 · 2019: 7 · 2018: 2
- FWCI
- 2.24
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Organic & Biomolecular Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research on Innovative)
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Enzyme Catalysis and Immobilization
- Physical Sciences › Chemical Engineering › Catalysis › Catalysis for Biomass Conversion
- Keywords
- hydroxyapatite, heterogeneous catalysis, cross-aldol reaction, ribose synthesis, formaldehyde, glycolaldehyde, one-pot synthesis, prebiotic chemistry
- MeSH terms
- Catalysis, Pentoses, Molecular Structure, Durapatite
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review